Rh6BG165500

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001974
Physical Location & Seq
Reverse (-)
26798006 .. 26799710
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG165500.1

Sequence Viewer

Length: 507 bp
ATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGACAGGAGATCCACAGAGGTATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACCTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCACGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATATCGTTACTTCGTGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGCGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTATCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTATTGGAGAACACAAAGCAATTGCAGTATCGTCGAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

168

Amino Acids

18.47

Weight (kDa)

5.22

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 1 - 75 1.5e-18 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 78 - 143 2.6e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 88
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 7, 219
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 2 cut(s) 16, 260
AfiI CCNNNNNNNGG 2 cut(s) 24, 88
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 191, 429
ApoI RAATTY 2 cut(s) 7, 219
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 56
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BanI GGYRCC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 178, 416
BccI CCATC 2 cut(s) 155, 364
BcgI CGANNNNNNTGC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 71, 171
BfoI RGCGCY 1 cut(s) 318
BfuI GTATCC 1 cut(s) 385
BglII AGATCT 1 cut(s) 173
BisI GCNGC 2 cut(s) 192, 430
BlsI GCNGC 2 cut(s) 193, 431
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 87, 119, 198
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 88
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 87, 119, 198
BseGI GGATG 2 cut(s) 33, 379
BseLI CCNNNNNNNGG 2 cut(s) 24, 88
BseMII CTCAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 178, 416
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 2 cut(s) 162, 268
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 24, 88
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 22, 53, 173
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 87, 119, 198
BssMI GATC 3 cut(s) 22, 53, 173
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 126, 378
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 33, 379
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 3 cut(s) 25, 56, 176
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 22, 53, 173
BstMWI GCNNNNNNNGC 2 cut(s) 200, 314
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 178, 416
BstX2I RGATCY 2 cut(s) 53, 173
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 2 cut(s) 53, 173
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 33, 379
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 15, 259
CviAII CATG 1 cut(s) 88
CviJI RGCY 2 cut(s) 203, 429
CviKI_1 RGCY 2 cut(s) 203, 429
CviQI GTAC 2 cut(s) 15, 259
DdeI CTNAG 2 cut(s) 126, 378
DpnI GATC 3 cut(s) 24, 55, 175
DpnII GATC 3 cut(s) 22, 53, 173
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 89, 294, 296, 338, 505
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 192, 430
FokI GGATG 2 cut(s) 40, 386
Fsp4HI GCNGC 2 cut(s) 192, 430
FspBI CTAG 2 cut(s) 71, 171
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 192, 430
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 317
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 1 cut(s) 358
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 3 cut(s) 27, 129, 369
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 34, 419
HpyCH4IV ACGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 314
HpyF3I CTNAG 2 cut(s) 126, 378
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 315
KpnI GGTACC 1 cut(s) 262
Kzo9I GATC 3 cut(s) 22, 53, 173
LpnPI CCDG 7 cut(s) 31, 34, 185, 201, 212, 240, 294
Lsp1109I GCAGC 2 cut(s) 178, 416
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 71, 171
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 4 cut(s) 44, 238, 322, 355
MalI GATC 3 cut(s) 24, 55, 175
MboI GATC 3 cut(s) 22, 53, 173
MboII GAAGA 4 cut(s) 104, 311, 353, 356
MfeI CAATTG 1 cut(s) 482
MflI RGATCY 2 cut(s) 53, 173
MluCI AATT 4 cut(s) 7, 219, 333, 482
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 327, 369
MnlI CCTC 6 cut(s) 55, 129, 158, 285, 305, 491
Mph1103I ATGCAT 1 cut(s) 101
MseI TTAA 2 cut(s) 264, 287
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 482
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 200, 314
NcoI CCATGG 1 cut(s) 87
NdeII GATC 3 cut(s) 22, 53, 173
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 3 cut(s) 44, 322, 355
NsiI ATGCAT 1 cut(s) 101
PctI GAATGC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 193, 431
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Ppu21I YACGTR 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 2 cut(s) 53, 173
RsaI GTAC 2 cut(s) 16, 260
RsaNI GTAC 2 cut(s) 15, 259
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 264, 287
SatI GCNGC 2 cut(s) 192, 430
Sau3AI GATC 3 cut(s) 22, 53, 173
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 200
SetI ASST 5 cut(s) 66, 114, 184, 264, 277
SfaNI GCATC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 4 cut(s) 7, 219, 333, 482
SsiI CCGC 1 cut(s) 229
SspI AATATT 1 cut(s) 462
SspMI CTAG 2 cut(s) 71, 171
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 423, 496
TaqII GACCGA 1 cut(s) 111
TasI AATT 4 cut(s) 7, 219, 333, 482
Tru1I TTAA 2 cut(s) 264, 287
Tru9I TTAA 2 cut(s) 264, 287
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 3 cut(s) 44, 322, 355
TseI GCWGC 2 cut(s) 191, 429
Tsp45I GTSAC 3 cut(s) 44, 322, 355
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 88
XapI RAATTY 2 cut(s) 7, 219
XspI CTAG 2 cut(s) 71, 171
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.