Rmu_sc0002404.1_g000014

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002404.1
OG0001974
Physical Location & Seq
Reverse (-)
86997 .. 89444
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002404.1_g000014.1.cds

Sequence Viewer

Length: 489 bp
atgggtctgcagcattttgggtggtacaaaaagatcatgcttctttcaatagatgaagggcgctgcgtgcatgtcatcaaaagagacttgggtgagccagacataattgtcagggagctattgcggcctgggggctatctgaaattgattgatttggttcttgaggaccaacagatggagttcgtcagccctgaaggtcttcgtttagatggtcgtcgtcccatggaaatgagacaaattcgagcagagattggtgttgtagccaaagccgacggttctgctatgtttgagatgggtaacaccaaagttgttgctgctgtttatggccctagagaggtccaaaataggagccaacaactgaatgccaatgcgttggtgcgatgtgaatacaccatggcaaattttagtaccggagatcggatgagaaaaccgaagggggacaggttatatgttctattccctttcagtgttcaaccatatgcgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

162

Amino Acids

18.48

Weight (kDa)

8.93

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 1 cut(s) 124
AcsI RAATTY 2 cut(s) 237, 400
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 26, 409
AfiI CCNNNNNNNGG 3 cut(s) 175, 334, 417
AgsI TTSAA 2 cut(s) 48, 473
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 78, 226
AoxI GGCC 2 cut(s) 125, 325
ApeKI GCWGC 3 cut(s) 10, 63, 314
ApoI RAATTY 2 cut(s) 237, 400
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 63, 484
AspS9I GGNCC 3 cut(s) 166, 326, 337
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 166, 337
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 22, 50, 301
BccI CCATC 3 cut(s) 169, 203, 286
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 78, 226
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 64
BisI GCNGC 4 cut(s) 11, 64, 125, 315
BlsI GCNGC 4 cut(s) 12, 65, 126, 316
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 2 cut(s) 166, 337
BmgT120I GGNCC 3 cut(s) 166, 326, 337
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 128, 222, 393
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 334, 417
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 128, 222, 393
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 175, 334, 417
BseXI GCAGC 3 cut(s) 22, 50, 301
BshFI GGCC 2 cut(s) 127, 327
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 204, 452
BslI CCNNNNNNNGG 3 cut(s) 175, 334, 417
BsmAI GTCTC 2 cut(s) 78, 226
BsmFI GGGAC 2 cut(s) 204, 452
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 127, 327
Bsp143I GATC 2 cut(s) 33, 415
Bsp19I CCATGG 2 cut(s) 222, 393
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 127, 327
BspLI GGNNCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 128, 222, 393
BssMI GATC 2 cut(s) 33, 415
BssT1I CCWWGG 2 cut(s) 222, 393
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 68
BstDSI CCRYGG 2 cut(s) 222, 393
BstF5I GGATG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 2 cut(s) 63, 484
BstKTI GATC 2 cut(s) 36, 418
BstMAI GTCTC 2 cut(s) 78, 226
BstMBI GATC 2 cut(s) 33, 415
BstMWI GCNNNNNNNGC 2 cut(s) 67, 124
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 22, 50, 301
BstV2I GAAGAC 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuRI GGCC 2 cut(s) 127, 327
BtgI CCRYGG 2 cut(s) 222, 393
BtgZI GCGATG 1 cut(s) 394
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 2 cut(s) 63, 484
Cfr13I GGNCC 3 cut(s) 166, 326, 337
Csp6I GTAC 2 cut(s) 25, 408
CviAII CATG 4 cut(s) 37, 71, 223, 394
CviJI RGCY 9 cut(s) 97, 118, 127, 135, 189, 263, 269, 327, 351
CviKI_1 RGCY 9 cut(s) 97, 118, 127, 135, 189, 263, 269, 327, 351
CviQI GTAC 2 cut(s) 25, 408
DpnI GATC 2 cut(s) 35, 417
DpnII GATC 2 cut(s) 33, 415
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 222, 393
Eco47I GGWCC 2 cut(s) 166, 337
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 2 cut(s) 222, 393
ErhI CCWWGG 2 cut(s) 222, 393
FaeI CATG 4 cut(s) 40, 74, 226, 397
FaqI GGGAC 2 cut(s) 204, 452
FatI CATG 4 cut(s) 36, 70, 222, 393
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 4 cut(s) 11, 64, 125, 315
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 11, 64, 125, 315
FspBI CTAG 1 cut(s) 330
GlaI GCGC 2 cut(s) 62, 483
GluI GCNGC 4 cut(s) 11, 64, 125, 315
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 2 cut(s) 127, 327
HapII CCGG 1 cut(s) 411
HhaI GCGC 2 cut(s) 63, 484
Hin1II CATG 4 cut(s) 40, 74, 226, 397
Hin6I GCGC 2 cut(s) 61, 482
HinP1I GCGC 2 cut(s) 61, 482
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 141, 420
Hpy188III TCNNGA 1 cut(s) 161
Hpy99I CGWCG 2 cut(s) 219, 275
HpyAV CCTTC 3 cut(s) 50, 188, 427
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 10, 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 124
Hsp92II CATG 4 cut(s) 40, 74, 226, 397
HspAI GCGC 2 cut(s) 61, 482
Kzo9I GATC 2 cut(s) 33, 415
LmnI GCTCC 2 cut(s) 115, 348
LpnPI CCDG 7 cut(s) 97, 111, 114, 141, 204, 424, 427
Lsp1109I GCAGC 3 cut(s) 22, 50, 301
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 35, 417
MboI GATC 2 cut(s) 33, 415
MboII GAAGA 1 cut(s) 191
MluCI AATT 4 cut(s) 105, 143, 237, 400
MnlI CCTC 2 cut(s) 157, 328
MroXI GAANNNNTTC 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 67, 124
NcoI CCATGG 2 cut(s) 222, 393
NdeI CATATG 1 cut(s) 478
NdeII GATC 2 cut(s) 33, 415
NlaIII CATG 4 cut(s) 40, 74, 226, 397
NlaIV GGNNCC 1 cut(s) 350
NspI RCATGY 1 cut(s) 74
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 4 cut(s) 12, 65, 126, 316
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 3 cut(s) 166, 326, 337
PstI CTGCAG 1 cut(s) 12
RsaI GTAC 2 cut(s) 26, 409
RsaNI GTAC 2 cut(s) 25, 408
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 4 cut(s) 11, 64, 125, 315
Sau3AI GATC 2 cut(s) 33, 415
Sau96I GGNCC 3 cut(s) 166, 326, 337
ScrFI CCNGG 1 cut(s) 129
SetI ASST 4 cut(s) 120, 199, 339, 446
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 2 cut(s) 166, 337
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 4 cut(s) 105, 143, 237, 400
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 2 cut(s) 222, 393
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 241
TasI AATT 4 cut(s) 105, 143, 237, 400
TauI GCSGC 1 cut(s) 127
TscAI CASTG 1 cut(s) 472
TseI GCWGC 3 cut(s) 10, 63, 314
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 166, 337
XapI RAATTY 2 cut(s) 237, 400
XceI RCATGY 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.