Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001974

Physical Location & Seq

Genomic Coordinates Reverse (-)

41432910 .. 41437442

Gene Structure 4533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCTGACGGTTCTGCTATGTTTGAGATGGGCAACACCAAAGTTGTTGCTGCCGTATATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCATTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAATTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATCTTGTTACTTCCTGCAGTGCTGGGTACCTTAACAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGATAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTACTGGAGAATACAAAGCAATTGGAGTATCGTCGAGGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

225

Amino Acids

24.72

Weight (kDa)

5.21

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	2 - 132	3.7e-41	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	135 - 200	5.9e-13	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61620 AT3G61620
fragaria_vesca	FvH4_2g10710 FvH4_2g10710 FvH4_4g15330 FvH4_4g15330
malus_domestica	MD01G1224600.v1.1 MD13G1191700.v1.1 MD16G1191800.v1.1
prunus_persica	Prupe.1G011800_v2.0.a1
pyrus_communis	pycom16g16150
rosa_chinensis	RchiOBHm_Chr4g0416511 RchiOBHm_Chr6g0268411 RchiOBHm_Chr6g0271671 RchiOBHm_Chr7g0217091
rosa_laevigata	RLG00000007977 RLG00000013911
rosa_multiflora	Rmu_sc0002404.1_g000014 Rmu_sc0003132.1_g000002 Rmu_sc0003722.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242590 Rroxscaffold_5G00360380 Rroxscaffold_7G00199820
rosa_rugosa	Rorug04G0142300 Rorug06G0041900 Rorug07G0165900 Rorug07G0166000 Rorug07G0166100 Rorug07G0166100
rosa_samantha	Rh4AG204800 Rh4BG202600 Rh4CG216000 Rh4DG202000 Rh6AG161200 Rh6BG165500 Rh6BG165600 Rh6CG159100 Rh6DG151400 Rh7AG305400 Rh7BG297000 Rh7CG324500 Rh7DG305600
rosa_wichuraiana	Rw4G017320 Rw6G013950 Rw7G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	259
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	2 cut(s)	219, 411
AcsI	RAATTY	4 cut(s)	15, 178, 280, 390
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	187, 431
AfiI	CCNNNNNNNGG	3 cut(s)	112, 195, 259
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	219, 411
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	103, 372
ApeKI	GCWGC	3 cut(s)	92, 362, 600
ApoI	RAATTY	4 cut(s)	15, 178, 280, 390
Asp718I	GGTACC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	104, 115, 373
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	79, 349, 587
BccI	CCATC	3 cut(s)	64, 326, 535
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	3 cut(s)	108, 242, 342
BfmI	CTRYAG	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	3 cut(s)	93, 363, 601
BlsI	GCNGC	3 cut(s)	94, 364, 602
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	104, 115, 373
BmiI	GGNNCC	2 cut(s)	128, 431
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	535
BpmI	CTGGAG	2 cut(s)	501, 659
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	171, 258, 290, 369
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 195, 259
Bse1I	ACTGG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	4 cut(s)	171, 258, 290, 369
BseGI	GGATG	2 cut(s)	204, 550
BseLI	CCNNNNNNNGG	3 cut(s)	112, 195, 259
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	642
BseXI	GCAGC	3 cut(s)	79, 349, 587
BseYI	CCCAGC	1 cut(s)	425
BshFI	GGCC	2 cut(s)	105, 374
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	112, 195, 259
BsmAI	GTCTC	1 cut(s)	300
BsmI	GAATGC	2 cut(s)	145, 272
BsnI	GGCC	2 cut(s)	105, 374
Bso31I	GGTCTC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	193, 224, 344, 403
Bsp19I	CCATGG	2 cut(s)	171, 258
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	2 cut(s)	105, 374
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	128, 431
BspMAI	CTGCAG	1 cut(s)	422
BspPI	GGATC	2 cut(s)	219, 411
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	4 cut(s)	171, 258, 290, 369
BssMI	GATC	4 cut(s)	193, 224, 344, 403
BssT1I	CCWWGG	2 cut(s)	171, 258
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	297, 549
BstDSI	CCRYGG	2 cut(s)	171, 258
BstF5I	GGATG	2 cut(s)	204, 550
BstKTI	GATC	4 cut(s)	196, 227, 347, 406
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	4 cut(s)	193, 224, 344, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 485
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	79, 349, 587
BstX2I	RGATCY	3 cut(s)	224, 344, 403
BstXI	CCANNNNNNTGG	2 cut(s)	151, 332
BstYI	RGATCY	3 cut(s)	224, 344, 403
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	105, 374
BtgI	CCRYGG	2 cut(s)	171, 258
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	204, 550
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	104, 115, 373
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	186, 430
CviAII	CATG	3 cut(s)	172, 259, 351
CviJI	RGCY	6 cut(s)	41, 47, 105, 129, 374, 600
CviKI_1	RGCY	6 cut(s)	41, 47, 105, 129, 374, 600
CviQI	GTAC	2 cut(s)	186, 430
DdeI	CTNAG	2 cut(s)	297, 549
DpnI	GATC	4 cut(s)	195, 226, 346, 405
DpnII	GATC	4 cut(s)	193, 224, 344, 403
DraI	TTTAAA	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	171, 258
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	171, 258
EcoT22I	ATGCAT	2 cut(s)	151, 272
ErhI	CCWWGG	2 cut(s)	171, 258
FaeI	CATG	3 cut(s)	175, 262, 354
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	3 cut(s)	171, 258, 350
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	93, 363, 601
FokI	GGATG	2 cut(s)	211, 557
Fsp4HI	GCNGC	3 cut(s)	93, 363, 601
FspBI	CTAG	3 cut(s)	108, 242, 342
GluI	GCNGC	3 cut(s)	93, 363, 601
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	2 cut(s)	501, 659
HaeIII	GGCC	2 cut(s)	105, 374
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	175, 262, 354
HinfI	GANTC	1 cut(s)	529
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	198, 300, 540
Hpy99I	CGWCG	1 cut(s)	669
HpyAV	CCTTC	2 cut(s)	205, 590
HpyCH4III	ACNGT	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 485
HpyF3I	CTNAG	2 cut(s)	297, 549
Hsp92II	CATG	3 cut(s)	175, 262, 354
KpnI	GGTACC	1 cut(s)	433
Kzo9I	GATC	4 cut(s)	193, 224, 344, 403
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	8 cut(s)	202, 356, 372, 383, 411, 430, 465, 623
Lsp1109I	GCAGC	3 cut(s)	79, 349, 587
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	3 cut(s)	108, 242, 342
MaeIII	GTNAC	3 cut(s)	409, 493, 526
MalI	GATC	4 cut(s)	195, 226, 346, 405
MboI	GATC	4 cut(s)	193, 224, 344, 403
MboII	GAAGA	4 cut(s)	275, 482, 524, 527
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	3 cut(s)	224, 344, 403
MluCI	AATT	6 cut(s)	15, 178, 280, 390, 504, 653
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	2 cut(s)	498, 540
MnlI	CCTC	7 cut(s)	3, 106, 300, 329, 456, 476, 662
Mph1103I	ATGCAT	2 cut(s)	151, 272
MseI	TTAA	3 cut(s)	284, 435, 458
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	2 cut(s)	145, 272
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	371, 485
NcoI	CCATGG	2 cut(s)	171, 258
NdeII	GATC	4 cut(s)	193, 224, 344, 403
NlaIII	CATG	3 cut(s)	175, 262, 354
NlaIV	GGNNCC	2 cut(s)	128, 431
NmuCI	GTSAC	2 cut(s)	493, 526
NsiI	ATGCAT	2 cut(s)	151, 272
NspI	RCATGY	1 cut(s)	354
PctI	GAATGC	2 cut(s)	145, 272
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	94, 364, 602
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	128, 431
PspPI	GGNCC	3 cut(s)	104, 115, 373
PstI	CTGCAG	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	3 cut(s)	224, 344, 403
RsaI	GTAC	2 cut(s)	187, 431
RsaNI	GTAC	2 cut(s)	186, 430
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	284, 435, 458
SatI	GCNGC	3 cut(s)	93, 363, 601
Sau3AI	GATC	4 cut(s)	193, 224, 344, 403
Sau96I	GGNCC	3 cut(s)	104, 115, 373
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	5 cut(s)	49, 117, 435, 448, 487
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	6 cut(s)	15, 178, 280, 390, 504, 653
SsiI	CCGC	1 cut(s)	400
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	3 cut(s)	108, 242, 342
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	171, 258
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	19, 594, 667
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	6 cut(s)	15, 178, 280, 390, 504, 653
Tru1I	TTAA	3 cut(s)	284, 435, 458
Tru9I	TTAA	3 cut(s)	284, 435, 458
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	493, 526
TseI	GCWGC	3 cut(s)	92, 362, 600
Tsp45I	GTSAC	2 cut(s)	493, 526
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	4 cut(s)	15, 178, 280, 390
XceI	RCATGY	1 cut(s)	354
XspI	CTAG	3 cut(s)	108, 242, 342
Zsp2I	ATGCAT	2 cut(s)	151, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.