Rroxscaffold_7G00199820

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001974
Physical Location & Seq
Forward (+)
47092073 .. 47097510
5438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199820.1

Sequence Viewer

Length: 945 bp
ATGCTTCTTTCAATAGATGAAGGGCGCTGCATGCTTGTCATCAAAAGAGACTTGGGTGAGCCAGACATAATTGTCAGGGAGCTATTGCGGCCTGGGGGCTATCTGAAATTGATTGATTTGGTTCTTGAGGATGATGATTGGGTTTTTTACTATTATCCCTTTTTAGACCAACAGATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGTCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCTGTTTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCGTTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACTGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACTTAATGCCTCGGTCGCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATATCGTTACTTCATGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGCGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCATTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAGCTGGCTACTCTTATGTAGATGTGGTGTACTCTATGGAAGCAAGCTTGGAAGTGGACCACACTTGGTTGCTGTACTCTTGTTTTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

314

Amino Acids

35.07

Weight (kDa)

4.64

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 76 - 206 8.7e-41 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 209 - 274 8.5e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 2 cut(s) 175, 481
AciI CCGC 2 cut(s) 88, 622
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 3 cut(s) 237, 400, 612
AcuI CTGAAG 2 cut(s) 213, 743
AfaI GTAC 4 cut(s) 409, 653, 881, 926
AfiI CCNNNNNNNGG 3 cut(s) 175, 334, 481
AgsI TTSAA 2 cut(s) 12, 794
AjnI CCWGG 2 cut(s) 91, 591
AluBI AGCT 3 cut(s) 82, 854, 897
AluI AGCT 3 cut(s) 82, 854, 897
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 441
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 3 cut(s) 89, 325, 594
ApeKI GCWGC 4 cut(s) 27, 314, 584, 822
ApoI RAATTY 3 cut(s) 237, 400, 612
Asp700I GAANNNNTTC 1 cut(s) 198
Asp718I GGTACC 1 cut(s) 651
AspLEI GCGC 2 cut(s) 27, 710
AspS9I GGNCC 4 cut(s) 326, 337, 595, 907
AsuHPI GGTGA 2 cut(s) 68, 449
AvaII GGWCC 2 cut(s) 337, 907
BanI GGYRCC 1 cut(s) 651
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 4 cut(s) 14, 301, 571, 809
BccI CCATC 5 cut(s) 169, 203, 286, 548, 757
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 93, 593
BciVI GTATCC 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 3 cut(s) 330, 464, 564
BfoI RGCGCY 2 cut(s) 28, 711
BfuI GTATCC 1 cut(s) 778
BglII AGATCT 1 cut(s) 566
BisI GCNGC 5 cut(s) 28, 89, 315, 585, 823
BlsI GCNGC 5 cut(s) 29, 90, 316, 586, 824
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 93, 593
Bme18I GGWCC 2 cut(s) 337, 907
BmgT120I GGNCC 4 cut(s) 326, 337, 595, 907
BmiI GGNNCC 2 cut(s) 350, 653
BmrFI CCNGG 2 cut(s) 93, 593
BmsI GCATC 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 432, 723
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 6 cut(s) 92, 222, 393, 480, 512, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 334, 481
Bse1I ACTGG 1 cut(s) 415
BseBI CCWGG 2 cut(s) 93, 593
BseDI CCNNGG 6 cut(s) 92, 222, 393, 480, 512, 591
BseGI GGATG 3 cut(s) 136, 426, 772
BseLI CCNNNNNNNGG 3 cut(s) 175, 334, 481
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 4 cut(s) 14, 301, 571, 809
BseYI CCCAGC 1 cut(s) 647
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 3 cut(s) 91, 327, 596
BshNI GGYRCC 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 175, 334, 481
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 204
BsmI GAATGC 2 cut(s) 367, 494
BsnI GGCC 3 cut(s) 91, 327, 596
Bsp143I GATC 3 cut(s) 415, 446, 566
Bsp19I CCATGG 3 cut(s) 222, 393, 480
BspACI CCGC 2 cut(s) 88, 622
BspANI GGCC 3 cut(s) 91, 327, 596
BspLI GGNNCC 2 cut(s) 350, 653
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 6 cut(s) 92, 222, 393, 480, 512, 591
BssMI GATC 3 cut(s) 415, 446, 566
BssT1I CCWWGG 3 cut(s) 222, 393, 480
Bst2UI CCWGG 2 cut(s) 93, 593
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 759
BstC8I GCNNGC 3 cut(s) 32, 856, 895
BstDEI CTNAG 1 cut(s) 771
BstDSI CCRYGG 3 cut(s) 222, 393, 480
BstF5I GGATG 3 cut(s) 136, 426, 772
BstH2I RGCGCY 2 cut(s) 28, 711
BstHHI GCGC 2 cut(s) 27, 710
BstKTI GATC 3 cut(s) 418, 449, 569
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 415, 446, 566
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 5 cut(s) 31, 88, 517, 593, 707
BstNI CCWGG 2 cut(s) 93, 593
BstNSI RCATGY 2 cut(s) 34, 576
BstSCI CCNGG 2 cut(s) 91, 591
BstV1I GCAGC 4 cut(s) 14, 301, 571, 809
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 2 cut(s) 446, 566
BstXI CCANNNNNNTGG 2 cut(s) 373, 554
BstYI RGATCY 2 cut(s) 446, 566
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 3 cut(s) 91, 327, 596
BtgI CCRYGG 3 cut(s) 222, 393, 480
BtgZI GCGATG 1 cut(s) 394
BtsCI GGATG 3 cut(s) 136, 426, 772
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 649
Cac8I GCNNGC 3 cut(s) 32, 856, 895
CaiI CAGNNNCTG 1 cut(s) 608
CfoI GCGC 2 cut(s) 27, 710
Cfr13I GGNCC 4 cut(s) 326, 337, 595, 907
CseI GACGC 1 cut(s) 614
Csp6I GTAC 4 cut(s) 408, 652, 880, 925
CviAII CATG 6 cut(s) 31, 223, 394, 481, 573, 639
CviQI GTAC 4 cut(s) 408, 652, 880, 925
DdeI CTNAG 1 cut(s) 771
DpnI GATC 3 cut(s) 417, 448, 568
DpnII GATC 3 cut(s) 415, 446, 566
DraI TTTAAA 1 cut(s) 681
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 759
Eco130I CCWWGG 3 cut(s) 222, 393, 480
Eco32I GATATC 2 cut(s) 459, 628
Eco47I GGWCC 2 cut(s) 337, 907
Eco57I CTGAAG 2 cut(s) 213, 743
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 2 cut(s) 91, 591
EcoRV GATATC 2 cut(s) 459, 628
EcoT14I CCWWGG 3 cut(s) 222, 393, 480
EcoT22I ATGCAT 1 cut(s) 494
ErhI CCWWGG 3 cut(s) 222, 393, 480
FaeI CATG 6 cut(s) 34, 226, 397, 484, 576, 642
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FaqI GGGAC 1 cut(s) 204
FatI CATG 6 cut(s) 30, 222, 393, 480, 572, 638
FauI CCCGC 1 cut(s) 615
Fnu4HI GCNGC 5 cut(s) 28, 89, 315, 585, 823
FokI GGATG 3 cut(s) 143, 433, 779
Fsp4HI GCNGC 5 cut(s) 28, 89, 315, 585, 823
FspBI CTAG 3 cut(s) 330, 464, 564
GlaI GCGC 2 cut(s) 26, 709
GluI GCNGC 5 cut(s) 28, 89, 315, 585, 823
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 2 cut(s) 432, 723
HaeII RGCGCY 2 cut(s) 28, 711
HaeIII GGCC 3 cut(s) 91, 327, 596
HgaI GACGC 1 cut(s) 614
HhaI GCGC 2 cut(s) 27, 710
Hin1II CATG 6 cut(s) 34, 226, 397, 484, 576, 642
Hin6I GCGC 2 cut(s) 25, 708
HinP1I GCGC 2 cut(s) 25, 708
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 1 cut(s) 751
HphI GGTGA 2 cut(s) 68, 449
Hpy166II GTNNAC 2 cut(s) 880, 907
Hpy188I TCNGA 3 cut(s) 105, 420, 762
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 880, 907
Hpy99I CGWCG 2 cut(s) 219, 275
HpyAV CCTTC 4 cut(s) 14, 188, 427, 812
HpyCH4III ACNGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 88, 517, 593, 707
HpyF3I CTNAG 1 cut(s) 771
Hsp92II CATG 6 cut(s) 34, 226, 397, 484, 576, 642
HspAI GCGC 2 cut(s) 25, 708
KpnI GGTACC 1 cut(s) 655
Kzo9I GATC 3 cut(s) 415, 446, 566
LmnI GCTCC 2 cut(s) 79, 348
Lsp1109I GCAGC 4 cut(s) 14, 301, 571, 809
LweI GCATC 1 cut(s) 757
MaeI CTAG 3 cut(s) 330, 464, 564
MaeIII GTNAC 4 cut(s) 296, 631, 715, 748
MalI GATC 3 cut(s) 417, 448, 568
MboI GATC 3 cut(s) 415, 446, 566
MboII GAAGA 5 cut(s) 191, 497, 704, 746, 749
MflI RGATCY 2 cut(s) 446, 566
MluCI AATT 6 cut(s) 69, 107, 237, 400, 612, 726
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 1 cut(s) 720
MnlI CCTC 7 cut(s) 121, 225, 328, 522, 551, 678, 698
Mph1103I ATGCAT 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 506, 657, 680
MslI CAYNNNNRTG 2 cut(s) 227, 533
MspR9I CCNGG 2 cut(s) 93, 593
Mva1269I GAATGC 2 cut(s) 367, 494
MvaI CCWGG 2 cut(s) 93, 593
MwoI GCNNNNNNNGC 5 cut(s) 31, 88, 517, 593, 707
NcoI CCATGG 3 cut(s) 222, 393, 480
NdeII GATC 3 cut(s) 415, 446, 566
NlaIII CATG 6 cut(s) 34, 226, 397, 484, 576, 642
NlaIV GGNNCC 2 cut(s) 350, 653
NmuCI GTSAC 2 cut(s) 715, 748
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 2 cut(s) 34, 576
PaeI GCATGC 1 cut(s) 34
PctI GAATGC 2 cut(s) 367, 494
PdmI GAANNNNTTC 1 cut(s) 198
PflMI CCANNNNNTGG 2 cut(s) 175, 481
PkrI GCNGC 5 cut(s) 29, 90, 316, 586, 824
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
Psp6I CCWGG 2 cut(s) 91, 591
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 91, 591
PspN4I GGNNCC 2 cut(s) 350, 653
PspPI GGNCC 4 cut(s) 326, 337, 595, 907
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 2 cut(s) 446, 566
RsaI GTAC 4 cut(s) 409, 653, 881, 926
RsaNI GTAC 4 cut(s) 408, 652, 880, 925
RseI CAYNNNNRTG 2 cut(s) 227, 533
SaqAI TTAA 3 cut(s) 506, 657, 680
SatI GCNGC 5 cut(s) 28, 89, 315, 585, 823
Sau3AI GATC 3 cut(s) 415, 446, 566
Sau96I GGNCC 4 cut(s) 326, 337, 595, 907
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 1 cut(s) 745
ScrFI CCNGG 2 cut(s) 93, 593
SetI ASST 7 cut(s) 84, 199, 339, 657, 670, 856, 899
SfaNI GCATC 1 cut(s) 757
SinI GGWCC 2 cut(s) 337, 907
SmiMI CAYNNNNRTG 2 cut(s) 227, 533
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SphI GCATGC 1 cut(s) 34
Sse9I AATT 6 cut(s) 69, 107, 237, 400, 612, 726
SsiI CCGC 2 cut(s) 88, 622
SspMI CTAG 3 cut(s) 330, 464, 564
StyD4I CCNGG 2 cut(s) 91, 591
StyI CCWWGG 3 cut(s) 222, 393, 480
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 241, 816
TaqII GACCGA 1 cut(s) 504
TasI AATT 6 cut(s) 69, 107, 237, 400, 612, 726
TatI WGTACW 3 cut(s) 407, 879, 924
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 3 cut(s) 506, 657, 680
Tru9I TTAA 3 cut(s) 506, 657, 680
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 2 cut(s) 715, 748
TseI GCWGC 4 cut(s) 27, 314, 584, 822
Tsp45I GTSAC 2 cut(s) 715, 748
TspDTI ATGAA 2 cut(s) 33, 627
TspRI CASTG 1 cut(s) 649
Van91I CCANNNNNTGG 2 cut(s) 175, 481
VpaK11BI GGWCC 2 cut(s) 337, 907
XapI RAATTY 3 cut(s) 237, 400, 612
XceI RCATGY 2 cut(s) 34, 576
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 3 cut(s) 330, 464, 564
ZrmI AGTACT 1 cut(s) 409
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.