Rroxscaffold_3G00242590

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001974
Physical Location & Seq
Forward (+)
34989399 .. 34990573
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242590.1

Sequence Viewer

Length: 321 bp
ATGCTGCAACCCCTGGCTCTAGCAGACGCTGGAATTCCAATGCGAGATCTTGTTACTTCCTGCAGTGTTGGGTACCTCAATAGCACCCCTCTGCTTGATTTAAACTATGCAGAAGATAGTGCTGGAGGCGCTGATGTGACTTTAGGAATTATGCCAAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTATCTTTGGATACTTTTGAAAATGTAATGCAACTTGCAGTTGAAGGCTGCAAGGCAGTTGCAGATTACAGTCGAGAAATATTGCAAGAGAATACAAAGCAATTGGAGTATCGTCGAGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

106

Amino Acids

11.54

Weight (kDa)

4.41

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH_C PF03725 16 - 81 4.9e-14 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 2 cut(s) 215, 239
AjnI CCWGG 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 4, 243
ApoI RAATTY 1 cut(s) 33
Asp718I GGTACC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 199
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 132
BfuI GTATCC 1 cut(s) 199
BglII AGATCT 1 cut(s) 46
BisI GCNGC 2 cut(s) 5, 244
BlsI GCNGC 2 cut(s) 6, 245
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuI GTATCC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 131
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 73
CviJI RGCY 2 cut(s) 17, 243
CviKI_1 RGCY 2 cut(s) 17, 243
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 12
FaiI YATR 3 cut(s) 108, 152, 319
FalI AAGNNNNNCTT 2 cut(s) 159, 191
Fnu4HI GCNGC 2 cut(s) 5, 244
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 5, 244
FspBI CTAG 1 cut(s) 20
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 5, 244
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 132
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 8 cut(s) 7, 63, 110, 226, 233, 246, 257, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 192
HspAI GCGC 1 cut(s) 129
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 15, 26, 73, 108
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 3 cut(s) 52, 136, 169
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 125, 167, 170
MfeI CAATTG 1 cut(s) 296
MflI RGATCY 1 cut(s) 46
MluCI AATT 3 cut(s) 33, 147, 296
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 86, 99, 119, 305
MseI TTAA 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 2 cut(s) 136, 169
PkrI GCNGC 2 cut(s) 6, 245
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 65
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 2 cut(s) 5, 244
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 14
SetI ASST 1 cut(s) 78
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 61
Sse9I AATT 3 cut(s) 33, 147, 296
SspI AATATT 1 cut(s) 276
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 2 cut(s) 268, 310
TasI AATT 3 cut(s) 33, 147, 296
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 136, 169
TseI GCWGC 2 cut(s) 4, 243
Tsp45I GTSAC 2 cut(s) 136, 169
TspRI CASTG 1 cut(s) 70
XapI RAATTY 1 cut(s) 33
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.