Rw6G013950

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001974
Physical Location & Seq
Reverse (-)
25743738 .. 25754895
11158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013950.1

Sequence Viewer

Length: 1125 bp
ATGCGCAGCTCTCTTGGCCTAAATTTTAACGAGATTCTCTTGTCCAGTGGCACTTTGGATGCTGCCAGACAGGGCGACTCATCGATAGCTATAGCGCTCATGAGCACCATGGTGAAGACGGCGACGGCATCAAACGAGTCTCTCTTTGATGTAGAGGTTGGAGGTAAAGCTTCAACCGCAGGAAATGTGGTAAAAGGGTTTTCGGCAAATTTAGAGATTTCGGGTAATGATCCAAATACCCAGATGCCAAAGAACCGATATTATTTTGAGAGTGGGAAAGAAGGGCGCTGCGTGCATGTCATCAAAATAGACTTGGGTGAGCCAGACATAATTGTCAGGGAGCTATTGTGGCCTGGGGGCTATCTGAAATTGATTGATTTGGTTCTTGAGGACCAACAGATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGTCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCTGTTTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCGTTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGACAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCGGACGCTGGAATTCCAATGCGGGATATCGTTACTTCGTGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTATTGGAGAACACAAAGCAATTGCAGTATCGTCGAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

374

Amino Acids

40.89

Weight (kDa)

5.11

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 151 - 281 1.3e-40 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 284 - 349 1.1e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 5
Acc65I GGTACC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 876
AccB7I CCANNNNNTGG 2 cut(s) 400, 706
AciI CCGC 3 cut(s) 177, 827, 847
AclWI GGATC 2 cut(s) 224, 666
AcsI RAATTY 5 cut(s) 22, 208, 462, 625, 837
AcuI CTGAAG 2 cut(s) 438, 968
AfaI GTAC 2 cut(s) 634, 878
AfeI AGCGCT 1 cut(s) 96
AfiI CCNNNNNNNGG 4 cut(s) 400, 559, 642, 706
AgsI TTSAA 2 cut(s) 174, 1019
AjnI CCWGG 2 cut(s) 352, 816
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 4 cut(s) 9, 89, 170, 343
AluI AGCT 4 cut(s) 9, 89, 170, 343
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 144, 747
AlwI GGATC 2 cut(s) 224, 666
Aor51HI AGCGCT 1 cut(s) 96
AoxI GGCC 4 cut(s) 16, 350, 550, 819
ApeKI GCWGC 6 cut(s) 6, 62, 288, 539, 809, 1047
ApoI RAATTY 5 cut(s) 22, 208, 462, 625, 837
Asp700I GAANNNNTTC 1 cut(s) 423
Asp718I GGTACC 1 cut(s) 876
AspLEI GCGC 3 cut(s) 6, 97, 288
AspS9I GGNCC 4 cut(s) 391, 551, 562, 820
AsuHPI GGTGA 3 cut(s) 124, 329, 674
AvaII GGWCC 2 cut(s) 391, 562
BanI GGYRCC 1 cut(s) 876
BbsI GAAGAC 2 cut(s) 122, 416
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 6 cut(s) 18, 49, 275, 526, 796, 1034
BccI CCATC 5 cut(s) 394, 428, 511, 773, 982
BceAI ACGGC 2 cut(s) 135, 141
BcgI CGANNNNNNTGC 3 cut(s) 485, 519, 1094
BciT130I CCWGG 2 cut(s) 354, 818
BciVI GTATCC 1 cut(s) 1003
BcoDI GTCTC 2 cut(s) 144, 747
BfaI CTAG 3 cut(s) 555, 689, 789
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 2 cut(s) 98, 289
BfuI GTATCC 1 cut(s) 1003
BglII AGATCT 1 cut(s) 791
BisI GCNGC 6 cut(s) 7, 63, 289, 540, 810, 1048
BlsI GCNGC 6 cut(s) 8, 64, 290, 541, 811, 1049
Bme1390I CCNGG 2 cut(s) 354, 818
Bme18I GGWCC 2 cut(s) 391, 562
BmgT120I GGNCC 4 cut(s) 391, 551, 562, 820
BmiI GGNNCC 2 cut(s) 575, 878
BmrFI CCNGG 2 cut(s) 354, 818
BmsI GCATC 4 cut(s) 49, 137, 234, 982
BpiI GAAGAC 2 cut(s) 122, 416
BpmI CTGGAG 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 747
BsaJI CCNNGG 7 cut(s) 108, 353, 447, 618, 705, 737, 816
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 4 cut(s) 400, 559, 642, 706
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 2 cut(s) 354, 818
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 7 cut(s) 108, 353, 447, 618, 705, 737, 816
BseGI GGATG 3 cut(s) 64, 651, 997
BseLI CCNNNNNNNGG 4 cut(s) 400, 559, 642, 706
BseMII CTCAG 1 cut(s) 758
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 6 cut(s) 18, 49, 275, 526, 796, 1034
BseYI CCCAGC 1 cut(s) 872
BsgI GTGCAG 1 cut(s) 886
BshFI GGCC 4 cut(s) 18, 352, 552, 821
BshNI GGYRCC 1 cut(s) 876
BshVI ATCGAT 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 4 cut(s) 400, 559, 642, 706
BsmAI GTCTC 2 cut(s) 144, 747
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 2 cut(s) 592, 719
BsnI GGCC 4 cut(s) 18, 352, 552, 821
Bso31I GGTCTC 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 4 cut(s) 229, 640, 671, 791
Bsp19I CCATGG 4 cut(s) 108, 447, 618, 705
BspACI CCGC 3 cut(s) 177, 827, 847
BspANI GGCC 4 cut(s) 18, 352, 552, 821
BspCNI CTCAG 1 cut(s) 757
BspDI ATCGAT 1 cut(s) 83
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 575, 878
BspPI GGATC 2 cut(s) 224, 666
BspT107I GGYRCC 1 cut(s) 876
BspTNI GGTCTC 1 cut(s) 747
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 7 cut(s) 108, 353, 447, 618, 705, 737, 816
BssMI GATC 4 cut(s) 229, 640, 671, 791
BssT1I CCWWGG 4 cut(s) 108, 447, 618, 705
Bst2UI CCWGG 2 cut(s) 354, 818
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 1 cut(s) 984
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 744, 996
BstDSI CCRYGG 4 cut(s) 108, 447, 618, 705
BstF5I GGATG 3 cut(s) 64, 651, 997
BstH2I RGCGCY 2 cut(s) 98, 289
BstHHI GCGC 3 cut(s) 6, 97, 288
BstKTI GATC 4 cut(s) 232, 643, 674, 794
BstMAI GTCTC 2 cut(s) 144, 747
BstMBI GATC 4 cut(s) 229, 640, 671, 791
BstMWI GCNNNNNNNGC 6 cut(s) 15, 176, 292, 349, 818, 932
BstNI CCWGG 2 cut(s) 354, 818
BstNSI RCATGY 2 cut(s) 299, 801
BstSCI CCNGG 2 cut(s) 352, 816
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 6 cut(s) 18, 49, 275, 526, 796, 1034
BstV2I GAAGAC 2 cut(s) 122, 416
BstX2I RGATCY 2 cut(s) 671, 791
BstXI CCANNNNNNTGG 2 cut(s) 598, 779
BstYI RGATCY 2 cut(s) 671, 791
Bsu15I ATCGAT 1 cut(s) 83
BsuI GTATCC 1 cut(s) 1003
BsuRI GGCC 4 cut(s) 18, 352, 552, 821
BsuTUI ATCGAT 1 cut(s) 83
BtgI CCRYGG 4 cut(s) 108, 447, 618, 705
BtgZI GCGATG 1 cut(s) 619
BtsCI GGATG 3 cut(s) 64, 651, 997
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 2 cut(s) 52, 874
Cac8I GCNNGC 1 cut(s) 293
CciI TCATGA 1 cut(s) 99
CfoI GCGC 3 cut(s) 6, 97, 288
Cfr13I GGNCC 4 cut(s) 391, 551, 562, 820
ClaI ATCGAT 1 cut(s) 83
CseI GACGC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 633, 877
CviAII CATG 7 cut(s) 100, 109, 296, 448, 619, 706, 798
CviQI GTAC 2 cut(s) 633, 877
DdeI CTNAG 2 cut(s) 744, 996
DpnI GATC 4 cut(s) 231, 642, 673, 793
DpnII GATC 4 cut(s) 229, 640, 671, 791
DraI TTTAAA 1 cut(s) 906
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 984
EarI CTCTTC 1 cut(s) 984
Eco130I CCWWGG 4 cut(s) 108, 447, 618, 705
Eco31I GGTCTC 1 cut(s) 747
Eco32I GATATC 2 cut(s) 684, 853
Eco47I GGWCC 2 cut(s) 391, 562
Eco47III AGCGCT 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 438, 968
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 2 cut(s) 352, 816
EcoRV GATATC 2 cut(s) 684, 853
EcoT14I CCWWGG 4 cut(s) 108, 447, 618, 705
EcoT22I ATGCAT 1 cut(s) 719
ErhI CCWWGG 4 cut(s) 108, 447, 618, 705
FaeI CATG 7 cut(s) 103, 112, 299, 451, 622, 709, 801
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 1 cut(s) 429
FatI CATG 7 cut(s) 99, 108, 295, 447, 618, 705, 797
FauI CCCGC 1 cut(s) 840
Fnu4HI GCNGC 6 cut(s) 7, 63, 289, 540, 810, 1048
FokI GGATG 3 cut(s) 71, 658, 1004
Fsp4HI GCNGC 6 cut(s) 7, 63, 289, 540, 810, 1048
FspBI CTAG 3 cut(s) 555, 689, 789
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 96, 287
GluI GCNGC 6 cut(s) 7, 63, 289, 540, 810, 1048
GsaI CCCAGC 1 cut(s) 876
GsuI CTGGAG 1 cut(s) 948
HaeII RGCGCY 2 cut(s) 98, 289
HaeIII GGCC 4 cut(s) 18, 352, 552, 821
HapII CCGG 1 cut(s) 636
HgaI GACGC 1 cut(s) 839
HhaI GCGC 3 cut(s) 6, 97, 288
Hin1II CATG 7 cut(s) 103, 112, 299, 451, 622, 709, 801
Hin6I GCGC 3 cut(s) 4, 95, 286
HinP1I GCGC 3 cut(s) 4, 95, 286
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 4 cut(s) 34, 77, 137, 976
HpaII CCGG 1 cut(s) 636
HphI GGTGA 3 cut(s) 124, 329, 674
Hpy188I TCNGA 4 cut(s) 366, 645, 747, 987
Hpy188III TCNNGA 2 cut(s) 100, 386
Hpy99I CGWCG 4 cut(s) 127, 444, 500, 1116
HpyAV CCTTC 4 cut(s) 275, 413, 652, 1037
HpyCH4III ACNGT 1 cut(s) 500
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 176, 292, 349, 818, 932
HpyF3I CTNAG 2 cut(s) 744, 996
Hsp92II CATG 7 cut(s) 103, 112, 299, 451, 622, 709, 801
HspAI GCGC 3 cut(s) 4, 95, 286
KpnI GGTACC 1 cut(s) 880
Kzo9I GATC 4 cut(s) 229, 640, 671, 791
LmnI GCTCC 2 cut(s) 340, 573
Lsp1109I GCAGC 6 cut(s) 18, 49, 275, 526, 796, 1034
LweI GCATC 4 cut(s) 49, 137, 234, 982
MaeI CTAG 3 cut(s) 555, 689, 789
MaeIII GTNAC 5 cut(s) 521, 662, 856, 940, 973
MalI GATC 4 cut(s) 231, 642, 673, 793
MboI GATC 4 cut(s) 229, 640, 671, 791
MboII GAAGA 6 cut(s) 127, 416, 722, 929, 971, 974
MfeI CAATTG 1 cut(s) 1100
MflI RGATCY 2 cut(s) 671, 791
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 9 cut(s) 22, 208, 330, 368, 462, 625, 837, 951, 1100
MlyI GAGTC 3 cut(s) 71, 146, 970
MmeI TCCRAC 3 cut(s) 139, 945, 987
Mph1103I ATGCAT 1 cut(s) 719
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 4 cut(s) 27, 731, 882, 905
MslI CAYNNNNRTG 3 cut(s) 110, 452, 758
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 354, 818
MunI CAATTG 1 cut(s) 1100
Mva1269I GAATGC 2 cut(s) 592, 719
MvaI CCWGG 2 cut(s) 354, 818
MwoI GCNNNNNNNGC 6 cut(s) 15, 176, 292, 349, 818, 932
NcoI CCATGG 4 cut(s) 108, 447, 618, 705
NdeII GATC 4 cut(s) 229, 640, 671, 791
NlaIII CATG 7 cut(s) 103, 112, 299, 451, 622, 709, 801
NlaIV GGNNCC 2 cut(s) 575, 878
NmuCI GTSAC 3 cut(s) 662, 940, 973
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 719
NspI RCATGY 2 cut(s) 299, 801
OliI CACNNNNGTG 1 cut(s) 110
PagI TCATGA 1 cut(s) 99
PctI GAATGC 2 cut(s) 592, 719
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 34
PflMI CCANNNNNTGG 2 cut(s) 400, 706
PkrI GCNGC 6 cut(s) 8, 64, 290, 541, 811, 1049
PleI GAGTC 3 cut(s) 71, 145, 970
PpsI GAGTC 3 cut(s) 71, 145, 970
Psp6I CCWGG 2 cut(s) 352, 816
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 352, 816
PspN4I GGNNCC 2 cut(s) 575, 878
PspPI GGNCC 4 cut(s) 391, 551, 562, 820
PsuI RGATCY 2 cut(s) 671, 791
RsaI GTAC 2 cut(s) 634, 878
RsaNI GTAC 2 cut(s) 633, 877
RseI CAYNNNNRTG 3 cut(s) 110, 452, 758
SaqAI TTAA 4 cut(s) 27, 731, 882, 905
SatI GCNGC 6 cut(s) 7, 63, 289, 540, 810, 1048
Sau3AI GATC 4 cut(s) 229, 640, 671, 791
Sau96I GGNCC 4 cut(s) 391, 551, 562, 820
SchI GAGTC 3 cut(s) 71, 146, 970
ScrFI CCNGG 2 cut(s) 354, 818
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 4 cut(s) 49, 137, 234, 982
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 391, 562
SmiMI CAYNNNNRTG 3 cut(s) 110, 452, 758
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 9 cut(s) 22, 208, 330, 368, 462, 625, 837, 951, 1100
SsiI CCGC 3 cut(s) 177, 827, 847
SspI AATATT 1 cut(s) 1080
SspMI CTAG 3 cut(s) 555, 689, 789
StyD4I CCNGG 2 cut(s) 352, 816
StyI CCWWGG 4 cut(s) 108, 447, 618, 705
TaaI ACNGT 1 cut(s) 500
TaqI TCGA 4 cut(s) 83, 466, 1041, 1114
TaqII GACCGA 1 cut(s) 729
TasI AATT 9 cut(s) 22, 208, 330, 368, 462, 625, 837, 951, 1100
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 4 cut(s) 27, 731, 882, 905
Tru9I TTAA 4 cut(s) 27, 731, 882, 905
TscAI CASTG 2 cut(s) 52, 874
TseFI GTSAC 3 cut(s) 662, 940, 973
TseI GCWGC 6 cut(s) 6, 62, 288, 539, 809, 1047
Tsp45I GTSAC 3 cut(s) 662, 940, 973
TspRI CASTG 2 cut(s) 52, 874
Van91I CCANNNNNTGG 2 cut(s) 400, 706
VpaK11BI GGWCC 2 cut(s) 391, 562
XapI RAATTY 5 cut(s) 22, 208, 462, 625, 837
XceI RCATGY 2 cut(s) 299, 801
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 3 cut(s) 555, 689, 789
Zsp2I ATGCAT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.