Rorug07G0166100

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001974
Physical Location & Seq
Forward (+)
13303612 .. 13306100
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0166100.1

Sequence Viewer

Length: 1491 bp
ATGGCTTCAAACTCAACTCTTCGCAAATCACGCAATGAGGACAGGATCAGTGAGTTGCCAGATGCAATTCTTTGCCACATTCTTTCTTTCTTTTCAACCAGAGAGGCTATGAAGACCAGCATTTTATCTCATAGATGGAAGAATGTCTGGGCCTCAGTTCCCAATCTAGATTTCAATGAATATGATTATTACCTAGACTATGTTTTCCGTACTTTGCCACAACCAGTAAGATATGACTCGGATTGGTTTGCACAGTTTGTGAATCGTGTACTTCTCAGTCGATGCCAGGGAAACATTCATAGGTTCTGTCTTCGAACTACTGATATGATGAATGTTTCTCTTATTGATTCTTGGGTTTCCACTGCCATAAAACATAATGTTGTTGAACTTGTTCTTAGTTCGGGGGGTCCTCGCTTGCCGGATTTTGAGATTCCGAGATGTCTTTTCATGTGCAACACATTGGTTAGTTTGGAGTTGGGTGTGCACAAAAATATTCGTGCCGTTACTCCTCCCTCACATTGTTTCCCCTGTCTCAAGTTGCTACATGTTACATTTTGCTTTCCTGATTCTCACACAGTGGAGAAGTTATTTCCTTCTTTCCCTGTACTTGAAGATCTTATTATAGATGGAGAACATGAAGATGCGTCAGCTTTCAATCTTGTTATATCTGCACCCAAACTGAAAAGACTGCAAATTAGTTTCATTGTCCGTAAATTTGCTATGATAGCTGCTGCAAGTGATTCTGAGGATTATGAAAATTATGGGTGCCAAATTTTTGTTAGTGCTGATGCTCCAAATCTTGAAGAGTTAGATATCTACTATGATATTCTGGTGAGCTATTCTTTGAAGAATGCCAAATGTCTGAGGAAAGCCGAGATAGGTTTCTTAGATGTGAAAGATCTTGAGAACCTTGATTATTTTCTTGGCCTCGCTGATCGCATATGCCGGCTCTTTGCAGATATTTGTAATGCTAAGTACCTGACAGTTTCAGCTCCAATTTTTGCGGCTCTTGACATTAGATATCACAGTCTGCTGCTGACATTTAGTAATTTGCACCACTTGGAGCTACAACTTCAAACTTGTCTCTGTTTGCAATCACTGACAACTTTGCTCAAGATATCACCAAATTTGGAACATCTCAAGATATTACCAAAAAGGGAACACCTGTATGTCAATGAGTACAACTATTGTGATGACGACGATGAGGATGAGCCTGAACATGGATGGGATGCACCAGAGTCTGTGCCTGTTTGTTTGATTTCACACCTCAAGACTATTTGCCTATGGGAATTCAAGGGGTGTCCAAATGAGGTGGAAGTGGCAAAGTACTTGGTGAAGCATGGCAAGGCTTTGAATAAGGTGACTATTTATAATCACTTCAGTGAAGACGAGGAGATGGAGATACGGTCACCTAGTGCCTTATGGTCGAAATTTTCAAAGTTTCCTAGGGGTTCCAAGACTTGTAAAATTCAATTTCAGACAATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

496

Amino Acids

57.06

Weight (kDa)

5.78

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 55 1.9e-07 F-box domain
LRR_At5g56370 PF24758 115 - 279 7.1e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 412 - 456 3.6e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1371
AccB1I GGYRCC 1 cut(s) 765
AciI CCGC 1 cut(s) 1004
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 6 cut(s) 713, 771, 1126, 1289, 1430, 1467
AcuI CTGAAG 1 cut(s) 1363
AdeI CACNNNGTG 2 cut(s) 577, 1415
AfaI GTAC 6 cut(s) 211, 270, 606, 977, 1181, 1328
AfiI CCNNNNNNNGG 1 cut(s) 1220
AflIII ACRYGT 1 cut(s) 544
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AleI CACNNNNGTG 1 cut(s) 1380
AluBI AGCT 5 cut(s) 650, 728, 837, 992, 1066
AluI AGCT 5 cut(s) 650, 728, 837, 992, 1066
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 536, 1088
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 1241
AoxI GGCC 2 cut(s) 150, 925
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 728, 731, 1033
ApoI RAATTY 6 cut(s) 713, 771, 1126, 1289, 1430, 1467
Asp700I GAANNNNTTC 1 cut(s) 390
AspA2I CCTAGG 1 cut(s) 1445
AspS9I GGNCC 2 cut(s) 150, 407
AsuHPI GGTGA 5 cut(s) 844, 1113, 1345, 1372, 1401
AsuII TTCGAA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 1445
BaeGI GKGCMC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 765
BbsI GAAGAC 3 cut(s) 119, 302, 1392
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 715, 718, 1020
BccI CCATC 4 cut(s) 129, 620, 1218, 1390
BceAI ACGGC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 536, 1088
BfaI CTAG 4 cut(s) 167, 194, 1413, 1446
BglII AGATCT 2 cut(s) 613, 898
BisI GCNGC 4 cut(s) 729, 732, 1005, 1034
BlnI CCTAGG 1 cut(s) 1445
BlsI GCNGC 4 cut(s) 730, 733, 1006, 1035
BmcAI AGTACT 1 cut(s) 1328
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 150, 407
BmiI GGNNCC 3 cut(s) 408, 767, 1453
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 5 cut(s) 52, 272, 631, 778, 1219
BpiI GAAGAC 3 cut(s) 119, 302, 1392
Bpu14I TTCGAA 1 cut(s) 313
BpuEI CTTGAG 5 cut(s) 518, 923, 1097, 1124, 1253
BsaJI CCNNGG 2 cut(s) 286, 1445
BsaXI ACNNNNNCTCC 2 cut(s) 1391, 1421
Bsc4I CCNNNNNNNGG 1 cut(s) 1220
Bse118I RCCGGY 1 cut(s) 945
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 286, 1445
BseGI GGATG 3 cut(s) 1213, 1229, 1234
BseLI CCNNNNNNNGG 1 cut(s) 1220
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 4 cut(s) 168, 289, 735, 854
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 2 cut(s) 498, 1406
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 3 cut(s) 715, 718, 1020
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 2 cut(s) 152, 927
BshNI GGYRCC 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 2 cut(s) 419, 946
BslI CCNNNNNNNGG 1 cut(s) 1220
BsmAI GTCTC 2 cut(s) 536, 1088
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 2 cut(s) 152, 927
Bsp119I TTCGAA 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 4 cut(s) 45, 613, 898, 934
BspACI CCGC 1 cut(s) 1004
BspANI GGCC 2 cut(s) 152, 927
BspCNI CTCAG 4 cut(s) 167, 288, 736, 855
BspLI GGNNCC 3 cut(s) 408, 767, 1453
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 945
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 945
BssECI CCNNGG 2 cut(s) 286, 1445
BssMI GATC 4 cut(s) 45, 613, 898, 934
BssT1I CCWWGG 1 cut(s) 1445
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 255, 577, 985, 1028, 1407
Bst6I CTCTTC 2 cut(s) 24, 798
BstBI TTCGAA 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 416, 947
BstDEI CTNAG 7 cut(s) 154, 275, 395, 744, 863, 886, 972
BstEII GGTNACC 1 cut(s) 1407
BstF5I GGATG 3 cut(s) 1213, 1229, 1234
BstKTI GATC 4 cut(s) 48, 616, 901, 937
BstMAI GTCTC 2 cut(s) 536, 1088
BstMBI GATC 4 cut(s) 45, 613, 898, 934
BstMWI GCNNNNNNNGC 2 cut(s) 30, 725
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 548
BstPI GGTNACC 1 cut(s) 1407
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 715, 718, 1020
BstV2I GAAGAC 3 cut(s) 119, 302, 1392
BstX2I RGATCY 2 cut(s) 613, 898
BstYI RGATCY 2 cut(s) 613, 898
BsuRI GGCC 2 cut(s) 152, 927
BtsCI GGATG 3 cut(s) 1213, 1229, 1234
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 5 cut(s) 55, 360, 582, 1097, 1387
Cac8I GCNNGC 2 cut(s) 416, 947
CaiI CAGNNNCTG 1 cut(s) 1241
Cfr10I RCCGGY 1 cut(s) 945
Cfr13I GGNCC 2 cut(s) 150, 407
CseI GACGC 1 cut(s) 633
Csp6I GTAC 6 cut(s) 210, 269, 605, 976, 1180, 1327
CspCI CAANNNNNGTGG 2 cut(s) 1293, 1328
CviAII CATG 5 cut(s) 448, 545, 635, 1220, 1340
CviQI GTAC 6 cut(s) 210, 269, 605, 976, 1180, 1327
DdeI CTNAG 7 cut(s) 154, 275, 395, 744, 863, 886, 972
DpnI GATC 4 cut(s) 47, 615, 900, 936
DpnII GATC 4 cut(s) 45, 613, 898, 934
DraIII CACNNNGTG 2 cut(s) 577, 1415
Eam1104I CTCTTC 2 cut(s) 24, 798
EarI CTCTTC 2 cut(s) 24, 798
Eco130I CCWWGG 1 cut(s) 1445
Eco32I GATATC 3 cut(s) 814, 1022, 1119
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 1363
Eco91I GGTNACC 1 cut(s) 1407
EcoO109I RGGNCCY 1 cut(s) 407
EcoO65I GGTNACC 1 cut(s) 1407
EcoRI GAATTC 1 cut(s) 1289
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 3 cut(s) 814, 1022, 1119
EcoT14I CCWWGG 1 cut(s) 1445
ErhI CCWWGG 1 cut(s) 1445
FaeI CATG 5 cut(s) 451, 548, 638, 1223, 1343
FatI CATG 5 cut(s) 447, 544, 634, 1219, 1339
FauNDI CATATG 1 cut(s) 941
Fnu4HI GCNGC 4 cut(s) 729, 732, 1005, 1034
FokI GGATG 3 cut(s) 1220, 1236, 1241
Fsp4HI GCNGC 4 cut(s) 729, 732, 1005, 1034
FspBI CTAG 4 cut(s) 167, 194, 1413, 1446
GluI GCNGC 4 cut(s) 729, 732, 1005, 1034
HaeIII GGCC 2 cut(s) 152, 927
HapII CCGG 2 cut(s) 419, 946
HgaI GACGC 1 cut(s) 633
Hin1II CATG 5 cut(s) 451, 548, 638, 1223, 1343
HinfI GANTC 7 cut(s) 236, 262, 347, 430, 566, 740, 1238
HpaII CCGG 2 cut(s) 419, 946
HphI GGTGA 5 cut(s) 844, 1113, 1345, 1372, 1401
Hpy166II GTNNAC 2 cut(s) 269, 484
Hpy188I TCNGA 5 cut(s) 241, 435, 745, 864, 1479
Hpy188III TCNNGA 8 cut(s) 167, 563, 800, 902, 1010, 1114, 1141, 1270
Hpy8I GTNNAC 2 cut(s) 269, 484
Hpy99I CGWCG 1 cut(s) 1202
HpyAV CCTTC 1 cut(s) 603
HpyCH4III ACNGT 5 cut(s) 255, 577, 985, 1028, 1407
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 725
HpyF3I CTNAG 7 cut(s) 154, 275, 395, 744, 863, 886, 972
Hsp92II CATG 5 cut(s) 451, 548, 638, 1223, 1343
KroI GCCGGC 1 cut(s) 945
KroNI GCCGGC 1 cut(s) 947
Kzo9I GATC 4 cut(s) 45, 613, 898, 934
LmnI GCTCC 3 cut(s) 796, 997, 1063
Lsp1109I GCAGC 3 cut(s) 715, 718, 1020
LweI GCATC 5 cut(s) 52, 272, 631, 778, 1219
MaeI CTAG 4 cut(s) 167, 194, 1413, 1446
MaeIII GTNAC 4 cut(s) 502, 547, 1360, 1407
MalI GATC 4 cut(s) 47, 615, 900, 936
MboI GATC 4 cut(s) 45, 613, 898, 934
MboII GAAGA 9 cut(s) 11, 124, 151, 302, 623, 650, 815, 859, 1397
MflI RGATCY 2 cut(s) 613, 898
MhlI GDGCHC 1 cut(s) 486
MlyI GAGTC 2 cut(s) 230, 1247
MroNI GCCGGC 1 cut(s) 945
MroXI GAANNNNTTC 1 cut(s) 390
MslI CAYNNNNRTG 3 cut(s) 639, 1167, 1380
MspI CCGG 2 cut(s) 419, 946
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 30, 725
NaeI GCCGGC 1 cut(s) 947
NdeI CATATG 1 cut(s) 941
NdeII GATC 4 cut(s) 45, 613, 898, 934
NgoMIV GCCGGC 1 cut(s) 945
NlaIII CATG 5 cut(s) 451, 548, 638, 1223, 1343
NlaIV GGNNCC 3 cut(s) 408, 767, 1453
NmeAIII GCCGAG 1 cut(s) 898
NmuCI GTSAC 2 cut(s) 1360, 1407
NspI RCATGY 1 cut(s) 548
NspV TTCGAA 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 1380
PciI ACATGT 1 cut(s) 544
PctI GAATGC 1 cut(s) 856
PdiI GCCGGC 1 cut(s) 947
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 5 cut(s) 262, 347, 430, 566, 740
PkrI GCNGC 4 cut(s) 730, 733, 1006, 1035
PleI GAGTC 2 cut(s) 230, 1246
PpsI GAGTC 2 cut(s) 230, 1246
PpuMI RGGWCCY 1 cut(s) 407
PscI ACATGT 1 cut(s) 544
PsiI TTATAA 1 cut(s) 1371
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 1407
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 408, 767, 1453
PspPI GGNCC 2 cut(s) 150, 407
PspPPI RGGWCCY 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 1241
PsuI RGATCY 2 cut(s) 613, 898
RsaI GTAC 6 cut(s) 211, 270, 606, 977, 1181, 1328
RsaNI GTAC 6 cut(s) 210, 269, 605, 976, 1180, 1327
RseI CAYNNNNRTG 3 cut(s) 639, 1167, 1380
SatI GCNGC 4 cut(s) 729, 732, 1005, 1034
Sau3AI GATC 4 cut(s) 45, 613, 898, 934
Sau96I GGNCC 2 cut(s) 150, 407
ScaI AGTACT 1 cut(s) 1328
SchI GAGTC 2 cut(s) 230, 1247
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 5 cut(s) 52, 272, 631, 778, 1219
SfuI TTCGAA 1 cut(s) 313
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 3 cut(s) 639, 1167, 1380
SmlI CTYRAG 5 cut(s) 533, 902, 1112, 1139, 1268
SmoI CTYRAG 5 cut(s) 533, 902, 1112, 1139, 1268
SsiI CCGC 1 cut(s) 1004
SspI AATATT 1 cut(s) 493
SspMI CTAG 4 cut(s) 167, 194, 1413, 1446
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 1445
TaaI ACNGT 5 cut(s) 255, 577, 985, 1028, 1407
TaqI TCGA 3 cut(s) 280, 313, 1427
TatI WGTACW 4 cut(s) 268, 604, 1179, 1326
TauI GCSGC 1 cut(s) 1007
TfiI GAWTC 5 cut(s) 262, 347, 430, 566, 740
TscAI CASTG 5 cut(s) 55, 367, 582, 1104, 1387
TseFI GTSAC 2 cut(s) 1360, 1407
TseI GCWGC 3 cut(s) 728, 731, 1033
Tsp45I GTSAC 2 cut(s) 1360, 1407
TspDTI ATGAA 8 cut(s) 125, 192, 287, 344, 436, 651, 691, 768
TspGWI ACGGA 2 cut(s) 197, 698
TspRI CASTG 5 cut(s) 55, 367, 582, 1104, 1387
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 6 cut(s) 713, 771, 1126, 1289, 1430, 1467
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 548
XmaJI CCTAGG 1 cut(s) 1445
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 4 cut(s) 167, 194, 1413, 1446
ZrmI AGTACT 1 cut(s) 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.