Rorug07G0166000

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001974
Physical Location & Seq
Forward (+)
13296563 .. 13300002
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0166000.1

Sequence Viewer

Length: 1713 bp
ATGGCTTCAAACTCAAAGCGTCTCAAATTATGCTCACACAATGAGGATAGGATCAGTGGGTTGCCAGGTGCAGTTCTTTGCCACATTCTTTCCTTCCTTTCAACCAGAGAGGCTGTAAAGACTAGCGTTTTATCACATAGATGGAAGAATGTGTGGGCTTCTGTTCCCATTCTAGATTTCGATGAAGAAGAATATTACCTAGAATATGTATTTCGTACTTTATCACGGCCAATAGGATATGACCCGGATTGGTTTGCACAGTTTGTGAATCGTGTGCTTTTGTTTCGTTGCCCGGGAGACATTCATAGATTCCGCCTTGTAGCTACAAGGATGCATGATGTTTCTCTTATTTATGCTTGGATTTCTACTGCCATTAGGCGTAATGTTGTGGAGCTTGATCTTAGAGTTGGCACTTCTACAGACCCACATTTTGAGATCCCCAAAAGGCTTTTCATGTGCAGCACATTGGTGAAGTTGAAGCTGTGGCTGCGCCGAGATATTAGTGTCATTACTCCTAGGTCAAATTGTTTCCCGTGCCTCAAGTTCCTTCATGTTACACTTCTGTATCCTGATTCTGACTCAATGGAGAAGCTCTTTTCTCGTTTCCCTGTACTTGAAGATCTGATTATAGATGGAAACCTTGAAGACGCATCAGCTTTCAAACTTGATATCTCTGCACCTAAACTAAAGAGACTACAAATTAGATTGACTGTCCATAAGTTTGCTATGGGTTCTAATAATTTTGTAAATTATGTGTGCCAAATTTTCATTAATGCTGATGCTCCAGACCTTGAAGAGTTAGATATCTGCTCTGATGTCTTGGTGAGCTTTTCTTTGAAGAATGCCAACTGTCTAAGCAAAGCTGAGGTAGATTTCTCTGATGTGAAAGAGCTTGAGGACCATGATTGTTTCCTTGGCCTAGTTGATCGCATACGTCAGATTTTTGCCGGAATTTGTGATGCTAAGTACCTGACAGTTAAAGCTCCAATTTTGACGGCCCTTGACATTGGAAATCAACGTCTTCTGCCTACATTGAATAATTTGAGCCACTTGGAGCTGCAACTTGAAACTTGTCGATGTTTGCAATCACTGACAACTTGGCTCAAAATATCACCAAATTTGGAACATCTCAAGATATCAACAAATAGGGAACATCTTTGGTTTGCAGATGACTACAAATATTGTGATGATGACAATGAGGATATTCTTGTACATGAATGGGGTGCACCAGAATTTGCAAACATTTGTTTGGTTTCACACCTCAAGACTGTTTGCCTATGGGATTTCAAGGGGTGTCCAAATGACATGGAAGTGGCAAAGTACTTGGTGAAGCATGGCAAGGCTTTGAATAAGGACTACAAATATTGTGATGATGACAATGAGGATGTTCTTGTACATGAATGGGGTGCACCAGAATTTGCAAACATTTGTTTGGTTTCACACCTCAAGACTGTTTGCCTATGGGATTTCAAGGGGTGTCCAAATGACATGGAAGTAGCAAAGTACTTGGTTCAGCATGGCAAATCTTTGAATAAGTTTTCAGTTCTCATTAGTGCTGATGGTCCAAATCTTGAAAAGTTAGATATGCATGGTGATTTTATGGTGAGCTATTCTTTGAAGAATGCAAAATTTGTAAGCAAAGACGAGATTGATTTCTCACTAGAATGGGAAACAAAATTGATCAGTATTGGCATAATAGGTCTCCAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

570

Amino Acids

65.44

Weight (kDa)

5.66

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 57 7.9e-07 F-box domain
LRR_At5g56370 PF24758 119 - 275 4.7e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 416 - 451 1.6e-08 FBD
FBD PF08387 477 - 513 1.9e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 313
AclWI GGATC 2 cut(s) 59, 430
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 6 cut(s) 762, 951, 1117, 1232, 1415, 1628
AfaI GTAC 7 cut(s) 217, 612, 968, 1212, 1322, 1395, 1505
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AleI CACNNNNGTG 1 cut(s) 467
Alw21I GWGCWC 2 cut(s) 1228, 1411
Alw26I GTCTC 4 cut(s) 26, 291, 685, 1706
Alw44I GTGCAC 2 cut(s) 1224, 1407
AlwI GGATC 2 cut(s) 59, 430
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 3 cut(s) 227, 916, 996
ApaLI GTGCAC 2 cut(s) 1224, 1407
ApeKI GCWGC 3 cut(s) 459, 487, 1057
ApoI RAATTY 6 cut(s) 762, 951, 1117, 1232, 1415, 1628
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AseI ATTAAT 1 cut(s) 771
AspA2I CCTAGG 1 cut(s) 515
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 3 cut(s) 898, 997, 1562
AsuC2I CCSGG 3 cut(s) 245, 293, 294
AsuHPI GGTGA 6 cut(s) 481, 835, 1104, 1339, 1604, 1615
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 2 cut(s) 898, 1562
AvrII CCTAGG 1 cut(s) 515
BaeGI GKGCMC 2 cut(s) 1228, 1411
BaeI ACNNNNGTAYC 2 cut(s) 548, 581
BbsI GAAGAC 2 cut(s) 651, 1013
Bbv12I GWGCWC 2 cut(s) 1228, 1411
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 3 cut(s) 471, 474, 1044
BccI CCATC 3 cut(s) 135, 626, 1553
BceAI ACGGC 2 cut(s) 242, 1011
BciT130I CCWGG 1 cut(s) 66
BciVI GTATCC 1 cut(s) 576
BclI TGATCA 1 cut(s) 1680
BcnI CCSGG 3 cut(s) 245, 293, 294
BcoDI GTCTC 4 cut(s) 26, 291, 685, 1706
BfaI CTAG 6 cut(s) 123, 173, 200, 516, 920, 1661
BfmI CTRYAG 1 cut(s) 417
BfuI GTATCC 1 cut(s) 576
BglII AGATCT 1 cut(s) 619
BisI GCNGC 3 cut(s) 460, 488, 1058
BlnI CCTAGG 1 cut(s) 515
BlsI GCNGC 3 cut(s) 461, 489, 1059
BmcAI AGTACT 2 cut(s) 1322, 1505
Bme1390I CCNGG 4 cut(s) 66, 245, 293, 294
Bme18I GGWCC 2 cut(s) 898, 1562
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 898, 997, 1562
BmrFI CCNGG 4 cut(s) 66, 245, 293, 294
BmsI GCATC 4 cut(s) 321, 659, 769, 949
BpiI GAAGAC 2 cut(s) 651, 1013
BpmI CTGGAG 1 cut(s) 768
Bpu10I CCTNAGC 1 cut(s) 864
BpuEI CTTGAG 5 cut(s) 524, 914, 1115, 1247, 1430
BpuMI CCSGG 3 cut(s) 245, 293, 294
BsaI GGTCTC 1 cut(s) 1706
BsaJI CCNNGG 3 cut(s) 292, 515, 913
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 3 cut(s) 292, 515, 913
BseGI GGATG 2 cut(s) 336, 1390
BseMII CTCAG 1 cut(s) 855
BseSI GKGCMC 2 cut(s) 1228, 1411
BseXI GCAGC 3 cut(s) 471, 474, 1044
BsgI GTGCAG 3 cut(s) 90, 478, 660
BshFI GGCC 3 cut(s) 229, 918, 998
BsiHKAI GWGCWC 2 cut(s) 1228, 1411
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 3 cut(s) 245, 293, 948
BsmAI GTCTC 4 cut(s) 26, 291, 685, 1706
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 847, 1627
BsnI GGCC 3 cut(s) 229, 918, 998
Bso31I GGTCTC 1 cut(s) 1706
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 1228, 1411
Bsp1407I TGTACA 2 cut(s) 1210, 1393
Bsp143I GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
BspACI CCGC 1 cut(s) 313
BspANI GGCC 3 cut(s) 229, 918, 998
BspCNI CTCAG 1 cut(s) 856
BspPI GGATC 2 cut(s) 59, 430
BspTNI GGTCTC 1 cut(s) 1706
BsrGI TGTACA 2 cut(s) 1210, 1393
BssECI CCNNGG 3 cut(s) 292, 515, 913
BssMI GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
BssT1I CCWWGG 2 cut(s) 515, 913
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 6 cut(s) 261, 712, 851, 976, 1270, 1453
Bst6I CTCTTC 1 cut(s) 789
BstAUI TGTACA 2 cut(s) 1210, 1393
BstDEI CTNAG 4 cut(s) 401, 854, 864, 963
BstF5I GGATG 2 cut(s) 336, 1390
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 6 cut(s) 54, 400, 438, 622, 928, 1683
BstMAI GTCTC 4 cut(s) 26, 291, 685, 1706
BstMBI GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 4 cut(s) 64, 243, 291, 292
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 2 cut(s) 1228, 1411
BstV1I GCAGC 3 cut(s) 471, 474, 1044
BstV2I GAAGAC 2 cut(s) 651, 1013
BstX2I RGATCY 2 cut(s) 435, 619
BstYI RGATCY 2 cut(s) 435, 619
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 3 cut(s) 229, 918, 998
BtsCI GGATG 2 cut(s) 336, 1390
BtsIMutI CAGTG 2 cut(s) 61, 1088
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 3 cut(s) 898, 997, 1562
Cfr9I CCCGGG 1 cut(s) 292
CseI GACGC 2 cut(s) 8, 656
Csp6I GTAC 7 cut(s) 216, 611, 967, 1211, 1321, 1394, 1504
CviQI GTAC 7 cut(s) 216, 611, 967, 1211, 1321, 1394, 1504
DdeI CTNAG 4 cut(s) 401, 854, 864, 963
DpnI GATC 6 cut(s) 53, 399, 437, 621, 927, 1682
DpnII GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 515, 913
Eco31I GGTCTC 1 cut(s) 1706
Eco32I GATATC 3 cut(s) 670, 805, 1137
Eco47I GGWCC 2 cut(s) 898, 1562
Eco88I CYCGRG 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 3 cut(s) 670, 805, 1137
EcoT14I CCWWGG 2 cut(s) 515, 913
EcoT22I ATGCAT 2 cut(s) 336, 1590
ErhI CCWWGG 2 cut(s) 515, 913
Esp3I CGTCTC 1 cut(s) 26
FbaI TGATCA 1 cut(s) 1680
Fnu4HI GCNGC 3 cut(s) 460, 488, 1058
FokI GGATG 2 cut(s) 343, 1397
Fsp4HI GCNGC 3 cut(s) 460, 488, 1058
FspBI CTAG 6 cut(s) 123, 173, 200, 516, 920, 1661
GlaI GCGC 1 cut(s) 491
GluI GCNGC 3 cut(s) 460, 488, 1058
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 3 cut(s) 229, 918, 998
HapII CCGG 3 cut(s) 245, 293, 948
HgaI GACGC 2 cut(s) 8, 656
HhaI GCGC 1 cut(s) 492
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 4 cut(s) 268, 309, 572, 578
HpaII CCGG 3 cut(s) 245, 293, 948
HphI GGTGA 6 cut(s) 481, 835, 1104, 1339, 1604, 1615
Hpy166II GTNNAC 2 cut(s) 1226, 1409
Hpy188I TCNGA 5 cut(s) 577, 624, 814, 880, 939
Hpy188III TCNNGA 7 cut(s) 173, 569, 785, 1132, 1264, 1447, 1571
Hpy8I GTNNAC 2 cut(s) 1226, 1409
HpyAV CCTTC 2 cut(s) 103, 557
HpyCH4III ACNGT 6 cut(s) 261, 712, 851, 976, 1270, 1453
HpyCH4IV ACGT 2 cut(s) 934, 1018
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 4 cut(s) 401, 854, 864, 963
HpySE526I ACGT 2 cut(s) 934, 1018
HspAI GCGC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 1680
Kzo9I GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
LmnI GCTCC 4 cut(s) 391, 787, 988, 1054
Lsp1109I GCAGC 3 cut(s) 471, 474, 1044
LweI GCATC 4 cut(s) 321, 659, 769, 949
MaeI CTAG 6 cut(s) 123, 173, 200, 516, 920, 1661
MaeII ACGT 2 cut(s) 934, 1018
MaeIII GTNAC 1 cut(s) 553
MalI GATC 6 cut(s) 53, 399, 437, 621, 927, 1682
MboI GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
MboII GAAGA 9 cut(s) 157, 197, 200, 629, 656, 806, 850, 1013, 1630
MflI RGATCY 2 cut(s) 435, 619
MhlI GDGCHC 2 cut(s) 1228, 1411
MlyI GAGTC 1 cut(s) 572
MnlI CCTC 9 cut(s) 37, 103, 548, 859, 889, 1192, 1271, 1375, 1454
Mph1103I ATGCAT 2 cut(s) 336, 1590
MseI TTAA 2 cut(s) 771, 978
MslI CAYNNNNRTG 4 cut(s) 139, 467, 1310, 1663
MspI CCGG 3 cut(s) 245, 293, 948
MspR9I CCNGG 4 cut(s) 66, 245, 293, 294
Mva1269I GAATGC 2 cut(s) 847, 1627
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 487
NciI CCSGG 3 cut(s) 245, 293, 294
NdeII GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
NmeAIII GCCGAG 1 cut(s) 518
NsiI ATGCAT 2 cut(s) 336, 1590
OliI CACNNNNGTG 1 cut(s) 467
PctI GAATGC 2 cut(s) 847, 1627
PfeI GAWTC 3 cut(s) 268, 309, 572
PkrI GCNGC 3 cut(s) 461, 489, 1059
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspPI GGNCC 3 cut(s) 898, 997, 1562
PsuI RGATCY 2 cut(s) 435, 619
RsaI GTAC 7 cut(s) 217, 612, 968, 1212, 1322, 1395, 1505
RsaNI GTAC 7 cut(s) 216, 611, 967, 1211, 1321, 1394, 1504
RseI CAYNNNNRTG 4 cut(s) 139, 467, 1310, 1663
SaqAI TTAA 2 cut(s) 771, 978
SatI GCNGC 3 cut(s) 460, 488, 1058
Sau3AI GATC 6 cut(s) 51, 397, 435, 619, 925, 1680
Sau96I GGNCC 3 cut(s) 898, 997, 1562
ScaI AGTACT 2 cut(s) 1322, 1505
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 4 cut(s) 66, 245, 293, 294
SduI GDGCHC 2 cut(s) 1228, 1411
SfaNI GCATC 4 cut(s) 321, 659, 769, 949
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 2 cut(s) 898, 1562
SmaI CCCGGG 1 cut(s) 294
SmiMI CAYNNNNRTG 4 cut(s) 139, 467, 1310, 1663
SmlI CTYRAG 5 cut(s) 539, 893, 1130, 1262, 1445
SmoI CTYRAG 5 cut(s) 539, 893, 1130, 1262, 1445
SsiI CCGC 1 cut(s) 313
SspI AATATT 3 cut(s) 194, 1181, 1364
SspMI CTAG 6 cut(s) 123, 173, 200, 516, 920, 1661
StyD4I CCNGG 4 cut(s) 64, 243, 291, 292
StyI CCWWGG 2 cut(s) 515, 913
TaaI ACNGT 6 cut(s) 261, 712, 851, 976, 1270, 1453
TaiI ACGT 2 cut(s) 937, 1021
TaqI TCGA 2 cut(s) 180, 1075
TatI WGTACW 5 cut(s) 610, 1210, 1320, 1393, 1503
TfiI GAWTC 3 cut(s) 268, 309, 572
Tru1I TTAA 2 cut(s) 771, 978
Tru9I TTAA 2 cut(s) 771, 978
TscAI CASTG 2 cut(s) 61, 1095
TseI GCWGC 3 cut(s) 459, 487, 1057
TspDTI ATGAA 7 cut(s) 198, 293, 442, 539, 757, 1230, 1413
TspMI CCCGGG 1 cut(s) 292
TspRI CASTG 2 cut(s) 61, 1095
VneI GTGCAC 2 cut(s) 1224, 1407
VpaK11BI GGWCC 2 cut(s) 898, 1562
VspI ATTAAT 1 cut(s) 771
XapI RAATTY 6 cut(s) 762, 951, 1117, 1232, 1415, 1628
XbaI TCTAGA 1 cut(s) 172
XmaI CCCGGG 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 515
XspI CTAG 6 cut(s) 123, 173, 200, 516, 920, 1661
ZrmI AGTACT 2 cut(s) 1322, 1505
Zsp2I ATGCAT 2 cut(s) 336, 1590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.