Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001974

Physical Location & Seq

Genomic Coordinates Reverse (-)

26799723 .. 26800393

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAAATGGTCGTCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCTGTTTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCGTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

68

Amino Acids

7.49

Weight (kDa)

9.68

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	18 - 60	3.3e-13	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61620 AT3G61620
fragaria_vesca	FvH4_2g10710 FvH4_2g10710 FvH4_4g15330 FvH4_4g15330
malus_domestica	MD01G1224600.v1.1 MD13G1191700.v1.1 MD16G1191800.v1.1
prunus_persica	Prupe.1G011800_v2.0.a1
pyrus_communis	pycom16g16150
rosa_chinensis	RchiOBHm_Chr4g0416511 RchiOBHm_Chr6g0268411 RchiOBHm_Chr6g0271671 RchiOBHm_Chr7g0217091
rosa_laevigata	RLG00000007977 RLG00000013911
rosa_multiflora	Rmu_sc0002404.1_g000014 Rmu_sc0003132.1_g000002 Rmu_sc0003722.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242590 Rroxscaffold_5G00360380 Rroxscaffold_7G00199820
rosa_rugosa	Rorug04G0142300 Rorug06G0041900 Rorug07G0165900 Rorug07G0166000 Rorug07G0166100 Rorug07G0166100
rosa_samantha	Rh4AG204800 Rh4BG202600 Rh4CG216000 Rh4DG202000 Rh6AG161200 Rh6BG165500 Rh6BG165600 Rh6CG159100 Rh6DG151400 Rh7AG305400 Rh7BG297000 Rh7CG324500 Rh7DG305600
rosa_wichuraiana	Rw4G017320 Rw6G013950 Rw7G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	152, 163
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	152, 163
BmiI	GGNNCC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	48
BspANI	GGCC	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	152, 163
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	5 cut(s)	15, 89, 95, 153, 177
CviKI_1	RGCY	5 cut(s)	15, 89, 95, 153, 177
DraI	TTTAAA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 110, 150
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	45, 101
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	122
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	1 cut(s)	63
MnlI	CCTC	2 cut(s)	51, 154
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	48
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	152, 163
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	152, 163
SetI	ASST	2 cut(s)	25, 165
SgeI	CNNG	4 cut(s)	29, 61, 80, 168
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseI	GCWGC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.