RLG00000013911

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001974
Physical Location & Seq
Forward (+)
44176472 .. 44181621
5150 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013911

Sequence Viewer

Length: 1011 bp
ATGCCGTTCAACACTTCAGGAACTGGGAATGTTTTCACGAAAGACACAAACTGCACTATCAATATGTTCTTTGACTGTGAAAGGCACAATTATGTAGTACAGGAGTTGGAACCACCAAAGTTTTGGGAGTTGGGAGTGGAGATTGAAAATGGTTTAGAAGGGTGCTGCGTGCATCTCATCAAAAGAGACTTGGGTGAGCCAGACATAATTGTCAGGGAGCTATTGCGGCCTGGGGGCTATCTGAAATTGATTGATTTGGTTCTTGAGGACCAACAGATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGTCGTCCCACGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCGTTTATGGCCCTAGAGAGGTTGGGTAACGTCCAAAATAGGAGCCAACAACTGAATGCCAATGTGTTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACGCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATATTGTTACTTCGTGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAATTATATAGAAGATAGTGCTGGAGGCGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTATCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTATTGGAGAACACAAAGCAATTGCAGTATCGTCGAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

337

Amino Acids

37.43

Weight (kDa)

4.96

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 110 - 243 7.2e-35 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 246 - 311 9.5e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
Acc65I GGTACC 1 cut(s) 762
AccB1I GGYRCC 1 cut(s) 762
AccB7I CCANNNNNTGG 2 cut(s) 277, 592
AciI CCGC 2 cut(s) 226, 733
AclWI GGATC 1 cut(s) 552
AcsI RAATTY 3 cut(s) 339, 511, 723
AcuI CTGAAG 2 cut(s) 315, 854
AfaI GTAC 3 cut(s) 99, 520, 764
AfiI CCNNNNNNNGG 4 cut(s) 277, 435, 528, 592
AgsI TTSAA 3 cut(s) 10, 146, 905
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 180, 633
AlwI GGATC 1 cut(s) 552
AlwNI CAGNNNCTG 2 cut(s) 23, 719
AoxI GGCC 3 cut(s) 227, 426, 705
ApeKI GCWGC 4 cut(s) 165, 416, 695, 933
ApoI RAATTY 3 cut(s) 339, 511, 723
Asp700I GAANNNNTTC 2 cut(s) 32, 300
Asp718I GGTACC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 821
AspS9I GGNCC 3 cut(s) 268, 427, 706
AsuHPI GGTGA 2 cut(s) 206, 560
AvaII GGWCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 762
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 4 cut(s) 152, 403, 682, 920
BccI CCATC 5 cut(s) 271, 305, 388, 659, 868
BcgI CGANNNNNNTGC 3 cut(s) 362, 396, 980
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 889
BcoDI GTCTC 2 cut(s) 180, 633
BfaI CTAG 3 cut(s) 431, 575, 675
BfoI RGCGCY 1 cut(s) 822
BfuI GTATCC 1 cut(s) 889
BglII AGATCT 1 cut(s) 677
BisI GCNGC 5 cut(s) 166, 227, 417, 696, 934
BlsI GCNGC 5 cut(s) 167, 228, 418, 697, 935
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 268, 427, 706
BmiI GGNNCC 3 cut(s) 111, 461, 764
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 2 cut(s) 181, 868
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 633
BsaJI CCNNGG 5 cut(s) 230, 324, 504, 591, 623
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 435, 528, 592
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 5 cut(s) 230, 324, 504, 591, 623
BseGI GGATG 2 cut(s) 537, 883
BseLI CCNNNNNNNGG 4 cut(s) 277, 435, 528, 592
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 152, 403, 682, 920
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 2 cut(s) 37, 772
BshFI GGCC 3 cut(s) 229, 428, 707
BshNI GGYRCC 1 cut(s) 762
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 277, 435, 528, 592
BsmAI GTCTC 2 cut(s) 180, 633
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 2 cut(s) 478, 605
BsnI GGCC 3 cut(s) 229, 428, 707
Bso31I GGTCTC 1 cut(s) 633
Bsp143I GATC 3 cut(s) 526, 557, 677
Bsp19I CCATGG 2 cut(s) 504, 591
BspACI CCGC 2 cut(s) 226, 733
BspANI GGCC 3 cut(s) 229, 428, 707
BspCNI CTCAG 1 cut(s) 643
BspLI GGNNCC 3 cut(s) 111, 461, 764
BspPI GGATC 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 762
BspTNI GGTCTC 1 cut(s) 633
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 5 cut(s) 230, 324, 504, 591, 623
BssMI GATC 3 cut(s) 526, 557, 677
BssT1I CCWWGG 2 cut(s) 504, 591
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 77, 377
Bst6I CTCTTC 1 cut(s) 870
BstC8I GCNNGC 2 cut(s) 170, 705
BstDEI CTNAG 2 cut(s) 630, 882
BstDSI CCRYGG 3 cut(s) 324, 504, 591
BstF5I GGATG 2 cut(s) 537, 883
BstH2I RGCGCY 1 cut(s) 822
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 3 cut(s) 529, 560, 680
BstMAI GTCTC 2 cut(s) 180, 633
BstMBI GATC 3 cut(s) 526, 557, 677
BstMWI GCNNNNNNNGC 4 cut(s) 226, 425, 704, 818
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 4 cut(s) 152, 403, 682, 920
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 557, 677
BstXI CCANNNNNNTGG 3 cut(s) 123, 484, 665
BstYI RGATCY 2 cut(s) 557, 677
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 3 cut(s) 229, 428, 707
BtgI CCRYGG 3 cut(s) 324, 504, 591
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 537, 883
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 170, 705
CaiI CAGNNNCTG 2 cut(s) 23, 719
CfoI GCGC 1 cut(s) 821
Cfr13I GGNCC 3 cut(s) 268, 427, 706
CseI GACGC 1 cut(s) 725
Csp6I GTAC 3 cut(s) 98, 519, 763
CviAII CATG 3 cut(s) 505, 592, 684
CviQI GTAC 3 cut(s) 98, 519, 763
DdeI CTNAG 2 cut(s) 630, 882
DpnI GATC 3 cut(s) 528, 559, 679
DpnII GATC 3 cut(s) 526, 557, 677
DraI TTTAAA 1 cut(s) 792
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco130I CCWWGG 2 cut(s) 504, 591
Eco31I GGTCTC 1 cut(s) 633
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 315, 854
EcoRI GAATTC 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 504, 591
EcoT22I ATGCAT 1 cut(s) 605
ErhI CCWWGG 2 cut(s) 504, 591
FaeI CATG 3 cut(s) 508, 595, 687
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 1 cut(s) 306
FatI CATG 3 cut(s) 504, 591, 683
FauI CCCGC 1 cut(s) 726
Fnu4HI GCNGC 5 cut(s) 166, 227, 417, 696, 934
FokI GGATG 2 cut(s) 544, 890
Fsp4HI GCNGC 5 cut(s) 166, 227, 417, 696, 934
FspBI CTAG 3 cut(s) 431, 575, 675
GlaI GCGC 1 cut(s) 820
GluI GCNGC 5 cut(s) 166, 227, 417, 696, 934
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 1 cut(s) 822
HaeIII GGCC 3 cut(s) 229, 428, 707
HapII CCGG 1 cut(s) 522
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 821
Hin1II CATG 3 cut(s) 508, 595, 687
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HinfI GANTC 1 cut(s) 862
HpaII CCGG 1 cut(s) 522
HphI GGTGA 2 cut(s) 206, 560
Hpy188I TCNGA 4 cut(s) 243, 531, 633, 873
Hpy188III TCNNGA 3 cut(s) 18, 37, 263
Hpy99I CGWCG 3 cut(s) 321, 377, 1002
HpyAV CCTTC 4 cut(s) 152, 290, 538, 923
HpyCH4III ACNGT 2 cut(s) 77, 377
HpyCH4IV ACGT 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 425, 704, 818
HpyF3I CTNAG 2 cut(s) 630, 882
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 3 cut(s) 508, 595, 687
HspAI GCGC 1 cut(s) 819
KpnI GGTACC 1 cut(s) 766
Kzo9I GATC 3 cut(s) 526, 557, 677
LmnI GCTCC 2 cut(s) 217, 459
Lsp1109I GCAGC 4 cut(s) 152, 403, 682, 920
LweI GCATC 2 cut(s) 181, 868
MaeI CTAG 3 cut(s) 431, 575, 675
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 5 cut(s) 398, 443, 742, 826, 859
MalI GATC 3 cut(s) 528, 559, 679
MboI GATC 3 cut(s) 526, 557, 677
MboII GAAGA 5 cut(s) 293, 608, 815, 857, 860
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 2 cut(s) 557, 677
MluCI AATT 9 cut(s) 88, 207, 245, 339, 511, 723, 793, 837, 986
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 3 cut(s) 87, 831, 873
MnlI CCTC 8 cut(s) 259, 327, 429, 633, 662, 789, 809, 995
Mph1103I ATGCAT 1 cut(s) 605
MroXI GAANNNNTTC 2 cut(s) 32, 300
MseI TTAA 3 cut(s) 617, 768, 791
MslI CAYNNNNRTG 3 cut(s) 90, 329, 644
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 986
Mva1269I GAATGC 2 cut(s) 478, 605
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 4 cut(s) 226, 425, 704, 818
NcoI CCATGG 2 cut(s) 504, 591
NdeII GATC 3 cut(s) 526, 557, 677
NlaIII CATG 3 cut(s) 508, 595, 687
NlaIV GGNNCC 3 cut(s) 111, 461, 764
NmuCI GTSAC 2 cut(s) 826, 859
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 1 cut(s) 687
PctI GAATGC 2 cut(s) 478, 605
PdmI GAANNNNTTC 2 cut(s) 32, 300
PflMI CCANNNNNTGG 2 cut(s) 277, 592
PkrI GCNGC 5 cut(s) 167, 228, 418, 697, 935
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 111, 461, 764
PspPI GGNCC 3 cut(s) 268, 427, 706
PstNI CAGNNNCTG 2 cut(s) 23, 719
PsuI RGATCY 2 cut(s) 557, 677
RsaI GTAC 3 cut(s) 99, 520, 764
RsaNI GTAC 3 cut(s) 98, 519, 763
RseI CAYNNNNRTG 3 cut(s) 90, 329, 644
SaqAI TTAA 3 cut(s) 617, 768, 791
SatI GCNGC 5 cut(s) 166, 227, 417, 696, 934
Sau3AI GATC 3 cut(s) 526, 557, 677
Sau96I GGNCC 3 cut(s) 268, 427, 706
SchI GAGTC 1 cut(s) 856
ScrFI CCNGG 1 cut(s) 231
SetI ASST 6 cut(s) 222, 301, 440, 450, 768, 781
SfaNI GCATC 2 cut(s) 181, 868
SinI GGWCC 1 cut(s) 268
SmiI ATTTAAAT 1 cut(s) 792
SmiMI CAYNNNNRTG 3 cut(s) 90, 329, 644
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 9 cut(s) 88, 207, 245, 339, 511, 723, 793, 837, 986
SsiI CCGC 2 cut(s) 226, 733
SspI AATATT 1 cut(s) 966
SspMI CTAG 3 cut(s) 431, 575, 675
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 2 cut(s) 504, 591
SwaI ATTTAAAT 1 cut(s) 792
TaaI ACNGT 2 cut(s) 77, 377
TaiI ACGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 343, 927, 1000
TaqII GACCGA 1 cut(s) 615
TasI AATT 9 cut(s) 88, 207, 245, 339, 511, 723, 793, 837, 986
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 3 cut(s) 617, 768, 791
Tru9I TTAA 3 cut(s) 617, 768, 791
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 2 cut(s) 826, 859
TseI GCWGC 4 cut(s) 165, 416, 695, 933
Tsp45I GTSAC 2 cut(s) 826, 859
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 1 cut(s) 760
Van91I CCANNNNNTGG 2 cut(s) 277, 592
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 3 cut(s) 339, 511, 723
XceI RCATGY 1 cut(s) 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmnI GAANNNNTTC 2 cut(s) 32, 300
XspI CTAG 3 cut(s) 431, 575, 675
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.