Rorug04G0142300

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001974
Physical Location & Seq
Reverse (-)
23676105 .. 23676581
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0142300.1

Sequence Viewer

Length: 477 bp
ATGGCGTTTCCAACGAGGACATCAGGGAGCCTCCGCCATGTGATTCTGCTGTTCCTCCTGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCCGCCCTCCTCTTCGTCGAGTTCTGCTGTGGCGCCCGATCGCGCAAGTGCGACTGCCATGGCTGCAAGGGCTTGAAGAAGGCCATGGAATTCGATTTGCAGCTGCAGAATGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGAGAGTGACACCAATCCCAATTACGAGTGTCTCCGGTCCGAGCTCAGGAAGATGGCTCCGCCGTCTTGCTTTTTCGAGCACGGTGTGGGTGCCCCGTCGCCAAGCTTGAAGGCTGGGGTCCCAAGCGAGGCCGCCGGCATAAGAAGTGACTTTTCCAATTTTACCCTCAAATGCAATTGCTTTTGTTTCTGGAATTTGTTTGTTTGTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

158

Amino Acids

17.73

Weight (kDa)

7.46

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 128, 350
AccII CGCG 1 cut(s) 139
AciI CCGC 4 cut(s) 34, 99, 320, 393
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 2 cut(s) 185, 454
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 346
AfiI CCNNNNNNNGG 3 cut(s) 257, 306, 388
AgsI TTSAA 2 cut(s) 172, 370
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 3 cut(s) 199, 304, 366
AluI AGCT 3 cut(s) 199, 304, 366
Alw21I GWGCWC 2 cut(s) 306, 342
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 55
AoxI GGCC 2 cut(s) 177, 390
ApeKI GCWGC 3 cut(s) 159, 196, 199
ApoI RAATTY 2 cut(s) 185, 454
AspLEI GCGC 2 cut(s) 131, 141
AspS9I GGNCC 2 cut(s) 297, 379
AsuC2I CCSGG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 297, 379
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 2 cut(s) 128, 350
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 306, 342
BbvI GCAGC 3 cut(s) 146, 186, 208
BccI CCATC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 253
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 5 cut(s) 99, 160, 197, 200, 393
BlsI GCNGC 5 cut(s) 100, 161, 198, 201, 394
Bme1390I CCNGG 2 cut(s) 226, 253
Bme18I GGWCC 2 cut(s) 297, 379
BmgT120I GGNCC 2 cut(s) 297, 379
BmiI GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
BmrFI CCNGG 2 cut(s) 226, 253
Bpu10I CCTNAGC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 73, 154, 180, 251
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 306, 388
Bse118I RCCGGY 1 cut(s) 395
BseBI CCWGG 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 73, 154, 180, 251
BseLI CCNNNNNNNGG 3 cut(s) 257, 306, 388
BseMII CTCAG 1 cut(s) 319
BseRI GAGGAG 3 cut(s) 62, 95, 224
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 3 cut(s) 146, 186, 208
BseYI CCCAGC 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 179, 392
BshNI GGYRCC 2 cut(s) 128, 350
BshVI ATCGAT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 306, 342
BsiSI CCGG 3 cut(s) 225, 295, 396
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 257, 306, 388
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 179, 392
Bsp1286I GDGCHC 3 cut(s) 306, 342, 355
Bsp143I GATC 3 cut(s) 60, 134, 237
Bsp19I CCATGG 2 cut(s) 154, 180
BspACI CCGC 4 cut(s) 34, 99, 320, 393
BspANI GGCC 2 cut(s) 179, 392
BspCNI CTCAG 1 cut(s) 318
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 2 cut(s) 128, 350
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 73, 154, 180, 251
BssMI GATC 3 cut(s) 60, 134, 237
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 154, 180
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 2 cut(s) 89, 113
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 231, 305
BstDSI CCRYGG 2 cut(s) 154, 180
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 2 cut(s) 131, 141
BstKTI GATC 3 cut(s) 63, 137, 240
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 60, 134, 237
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 159, 165
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 224, 251
BstSFI CTRYAG 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 146, 186, 208
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 2 cut(s) 179, 392
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 2 cut(s) 154, 180
Cac8I GCNNGC 1 cut(s) 397
CfoI GCGC 2 cut(s) 131, 141
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 297, 379
ClaI ATCGAT 1 cut(s) 240
CpoI CGGWCCG 1 cut(s) 297
CspI CGGWCCG 1 cut(s) 297
CviAII CATG 3 cut(s) 38, 155, 181
DdeI CTNAG 2 cut(s) 231, 305
DinI GGCGCC 1 cut(s) 130
DpnI GATC 3 cut(s) 62, 136, 239
DpnII GATC 3 cut(s) 60, 134, 237
DraIII CACNNNGTG 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 89, 113
EarI CTCTTC 2 cut(s) 89, 113
EciI GGCGGA 2 cut(s) 23, 309
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 154, 180
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 297, 379
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 154, 180
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 154, 180
FaeI CATG 3 cut(s) 41, 158, 184
FaiI YATR 4 cut(s) 39, 156, 182, 401
FaqI GGGAC 1 cut(s) 365
FatI CATG 3 cut(s) 37, 154, 180
Fnu4HI GCNGC 5 cut(s) 99, 160, 197, 200, 393
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 5 cut(s) 99, 160, 197, 200, 393
GlaI GCGC 2 cut(s) 130, 140
GluI GCNGC 5 cut(s) 99, 160, 197, 200, 393
GsaI CCCAGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 179, 392
HapII CCGG 3 cut(s) 225, 295, 396
HhaI GCGC 2 cut(s) 131, 141
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 41, 158, 184
Hin6I GCGC 2 cut(s) 129, 139
HinP1I GCGC 2 cut(s) 129, 139
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 1 cut(s) 43
HpaII CCGG 3 cut(s) 225, 295, 396
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 4 cut(s) 58, 220, 307, 451
Hpy99I CGWCG 3 cut(s) 98, 116, 361
HpyAV CCTTC 3 cut(s) 169, 250, 364
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 162, 196, 202, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 165
HpyF3I CTNAG 2 cut(s) 231, 305
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 41, 158, 184
HspAI GCGC 2 cut(s) 129, 139
KasI GGCGCC 1 cut(s) 128
KflI GGGWCCC 1 cut(s) 379
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Kzo9I GATC 3 cut(s) 60, 134, 237
LmnI GCTCC 2 cut(s) 27, 322
Lsp1109I GCAGC 3 cut(s) 146, 186, 208
MaeIII GTNAC 2 cut(s) 266, 407
MalI GATC 3 cut(s) 62, 136, 239
MboI GATC 3 cut(s) 60, 134, 237
MboII GAAGA 6 cut(s) 76, 79, 82, 100, 184, 322
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 3 cut(s) 306, 342, 355
MluCI AATT 5 cut(s) 185, 280, 418, 436, 454
Mly113I GGCGCC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 3 cut(s) 225, 295, 396
MspR9I CCNGG 2 cut(s) 226, 253
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 159, 165
NaeI GCCGGC 1 cut(s) 397
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 1 cut(s) 226
NcoI CCATGG 2 cut(s) 154, 180
NdeII GATC 3 cut(s) 60, 134, 237
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 3 cut(s) 41, 158, 184
NlaIV GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 266, 407
PdiI GCCGGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 226
PkrI GCNGC 5 cut(s) 100, 161, 198, 201, 394
Ple19I CGATCG 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 6 cut(s) 29, 130, 318, 352, 380, 381
PspPI GGNCC 2 cut(s) 297, 379
PspPPI RGGWCCY 1 cut(s) 379
PstI CTGCAG 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 226
PvuI CGATCG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 199
Rsr2I CGGWCCG 1 cut(s) 297
RsrII CGGWCCG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 306
SatI GCNGC 5 cut(s) 99, 160, 197, 200, 393
Sau3AI GATC 3 cut(s) 60, 134, 237
Sau96I GGNCC 2 cut(s) 297, 379
ScrFI CCNGG 2 cut(s) 226, 253
SduI GDGCHC 3 cut(s) 306, 342, 355
SetI ASST 4 cut(s) 72, 201, 306, 368
SfcI CTRYAG 1 cut(s) 200
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 2 cut(s) 297, 379
Sse9I AATT 5 cut(s) 185, 280, 418, 436, 454
SsiI CCGC 4 cut(s) 34, 99, 320, 393
SspDI GGCGCC 1 cut(s) 128
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 224, 251
StyI CCWWGG 2 cut(s) 154, 180
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 4 cut(s) 114, 189, 240, 336
TasI AATT 5 cut(s) 185, 280, 418, 436, 454
TauI GCSGC 2 cut(s) 101, 395
TfiI GAWTC 1 cut(s) 43
TseFI GTSAC 2 cut(s) 266, 407
TseI GCWGC 3 cut(s) 159, 196, 199
Tsp45I GTSAC 2 cut(s) 266, 407
Tth111I GACNNNGTC 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 297, 379
XapI RAATTY 2 cut(s) 185, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.