RLG00000007977

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001974
Physical Location & Seq
Forward (+)
23791314 .. 23800198
8885 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007977

Sequence Viewer

Length: 912 bp
ATGCTAGATCGATGTCGCCACCAGACGCTGGCGTCGCCGCTTGGAAACGAAGTGGATCGAAATCCAGTCCCTCCTAAGTTGCCATTGACATCCCCAGAATCAAAAAACCTGACCACCTTGCTTCAGGAGTGCCACACCAGACAGGCTGGGGTGCTTTTTGCTTCGTCCGTATTGATTGAATTAGCAATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGCCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCTGACGGTTCTGCTATGTTTGAGATGGGCAACACCAAAGTTGTTGCTGCCGTATATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATACATTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAATTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCGGATGCTGGAATTCCAATGCGGGATCTTGTTACTTCCTGCAGTGCTGGGTACCTTAACAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGATAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTACTGGAGAATACAAAGCAATTGGAGTATCGTCGAGGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

304

Amino Acids

33.38

Weight (kDa)

5.63

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 80 - 210 1e-40 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 213 - 278 1e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 2 cut(s) 28, 493
AciI CCGC 3 cut(s) 38, 614, 634
AclWI GGATC 3 cut(s) 63, 453, 645
AcsI RAATTY 4 cut(s) 249, 412, 514, 624
AcuI CTGAAG 3 cut(s) 107, 225, 755
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 2 cut(s) 421, 665
AfiI CCNNNNNNNGG 5 cut(s) 28, 235, 346, 429, 493
AgsI TTSAA 2 cut(s) 179, 806
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 3 cut(s) 63, 453, 645
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 2 cut(s) 337, 606
ApeKI GCWGC 3 cut(s) 326, 596, 834
ApoI RAATTY 4 cut(s) 249, 412, 514, 624
Asp700I GAANNNNTTC 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 663
AspS9I GGNCC 3 cut(s) 338, 349, 607
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 313, 583, 821
BccI CCATC 4 cut(s) 215, 298, 560, 769
BceAI ACGGC 2 cut(s) 213, 314
BciT130I CCWGG 1 cut(s) 605
BciVI GTATCC 1 cut(s) 790
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 4 cut(s) 5, 342, 476, 576
BfmI CTRYAG 1 cut(s) 652
BfuI GTATCC 1 cut(s) 790
BglII AGATCT 1 cut(s) 578
BisI GCNGC 4 cut(s) 38, 327, 597, 835
BlsI GCNGC 4 cut(s) 39, 328, 598, 836
Bme1390I CCNGG 1 cut(s) 605
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 3 cut(s) 338, 349, 607
BmiI GGNNCC 2 cut(s) 362, 665
BmrFI CCNGG 1 cut(s) 605
BmsI GCATC 2 cut(s) 607, 769
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 2 cut(s) 735, 893
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 5 cut(s) 234, 405, 492, 524, 603
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 235, 346, 429, 493
Bse1I ACTGG 2 cut(s) 65, 876
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 605
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 5 cut(s) 234, 405, 492, 524, 603
BseGI GGATG 4 cut(s) 89, 438, 622, 784
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 5 cut(s) 28, 235, 346, 429, 493
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 2 cut(s) 65, 876
BseXI GCAGC 3 cut(s) 313, 583, 821
BseYI CCCAGC 2 cut(s) 146, 659
BshFI GGCC 2 cut(s) 339, 608
BshNI GGYRCC 1 cut(s) 663
BshVI ATCGAT 1 cut(s) 10
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 53, 216
BslI CCNNNNNNNGG 5 cut(s) 28, 235, 346, 429, 493
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 53, 216
BsmI GAATGC 2 cut(s) 379, 506
BsnI GGCC 2 cut(s) 339, 608
Bso31I GGTCTC 1 cut(s) 534
Bsp143I GATC 6 cut(s) 7, 55, 427, 458, 578, 637
Bsp19I CCATGG 3 cut(s) 234, 405, 492
BspACI CCGC 3 cut(s) 38, 614, 634
BspANI GGCC 2 cut(s) 339, 608
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 362, 665
BspMAI CTGCAG 1 cut(s) 656
BspPI GGATC 3 cut(s) 63, 453, 645
BspT107I GGYRCC 1 cut(s) 663
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 65, 876
BssECI CCNNGG 5 cut(s) 234, 405, 492, 524, 603
BssMI GATC 6 cut(s) 7, 55, 427, 458, 578, 637
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 3 cut(s) 234, 405, 492
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 771
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 75, 531, 783
BstDSI CCRYGG 3 cut(s) 234, 405, 492
BstF5I GGATG 4 cut(s) 89, 438, 622, 784
BstKTI GATC 6 cut(s) 10, 58, 430, 461, 581, 640
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 6 cut(s) 7, 55, 427, 458, 578, 637
BstMWI GCNNNNNNNGC 3 cut(s) 34, 605, 719
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 603
BstSFI CTRYAG 1 cut(s) 652
BstV1I GCAGC 3 cut(s) 313, 583, 821
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 3 cut(s) 458, 578, 637
BstXI CCANNNNNNTGG 2 cut(s) 385, 566
BstYI RGATCY 3 cut(s) 458, 578, 637
Bsu15I ATCGAT 1 cut(s) 10
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 2 cut(s) 339, 608
BsuTUI ATCGAT 1 cut(s) 10
BtgI CCRYGG 3 cut(s) 234, 405, 492
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 4 cut(s) 89, 438, 622, 784
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 338, 349, 607
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 2 cut(s) 21, 34
Csp6I GTAC 2 cut(s) 420, 664
CviAII CATG 4 cut(s) 235, 406, 493, 585
CviJI RGCY 8 cut(s) 146, 201, 275, 281, 339, 363, 608, 834
CviKI_1 RGCY 8 cut(s) 146, 201, 275, 281, 339, 363, 608, 834
CviQI GTAC 2 cut(s) 420, 664
DdeI CTNAG 3 cut(s) 75, 531, 783
DpnI GATC 6 cut(s) 9, 57, 429, 460, 580, 639
DpnII GATC 6 cut(s) 7, 55, 427, 458, 578, 637
DraI TTTAAA 1 cut(s) 693
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Eco130I CCWWGG 3 cut(s) 234, 405, 492
Eco31I GGTCTC 1 cut(s) 534
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 3 cut(s) 107, 225, 755
EcoRI GAATTC 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 603
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 3 cut(s) 234, 405, 492
EcoT22I ATGCAT 1 cut(s) 506
ErhI CCWWGG 3 cut(s) 234, 405, 492
FaeI CATG 4 cut(s) 238, 409, 496, 588
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 53, 216
FatI CATG 4 cut(s) 234, 405, 492, 584
FauI CCCGC 1 cut(s) 627
Fnu4HI GCNGC 4 cut(s) 38, 327, 597, 835
FokI GGATG 4 cut(s) 76, 445, 629, 791
Fsp4HI GCNGC 4 cut(s) 38, 327, 597, 835
FspBI CTAG 4 cut(s) 5, 342, 476, 576
GluI GCNGC 4 cut(s) 38, 327, 597, 835
GsaI CCCAGC 2 cut(s) 150, 663
GsuI CTGGAG 2 cut(s) 735, 893
HaeIII GGCC 2 cut(s) 339, 608
HapII CCGG 1 cut(s) 423
HgaI GACGC 2 cut(s) 21, 34
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 4 cut(s) 238, 409, 496, 588
HinfI GANTC 2 cut(s) 98, 763
HpaII CCGG 1 cut(s) 423
HphI GGTGA 1 cut(s) 461
Hpy188I TCNGA 3 cut(s) 432, 534, 774
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 2 cut(s) 37, 903
HpyAV CCTTC 3 cut(s) 200, 439, 824
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 9 cut(s) 504, 550, 584, 599, 654, 817, 824, 837, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 605, 719
HpyF3I CTNAG 3 cut(s) 75, 531, 783
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 4 cut(s) 238, 409, 496, 588
KpnI GGTACC 1 cut(s) 667
Kzo9I GATC 6 cut(s) 7, 55, 427, 458, 578, 637
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 3 cut(s) 313, 583, 821
LweI GCATC 2 cut(s) 607, 769
MaeI CTAG 4 cut(s) 5, 342, 476, 576
MaeIII GTNAC 3 cut(s) 643, 727, 760
MalI GATC 6 cut(s) 9, 57, 429, 460, 580, 639
MboI GATC 6 cut(s) 7, 55, 427, 458, 578, 637
MboII GAAGA 5 cut(s) 203, 509, 716, 758, 761
MfeI CAATTG 1 cut(s) 887
MflI RGATCY 3 cut(s) 458, 578, 637
MluCI AATT 7 cut(s) 179, 249, 412, 514, 624, 738, 887
MlyI GAGTC 1 cut(s) 757
MmeI TCCRAC 2 cut(s) 732, 774
MnlI CCTC 8 cut(s) 81, 237, 340, 534, 563, 690, 710, 896
Mph1103I ATGCAT 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 3 cut(s) 518, 669, 692
MslI CAYNNNNRTG 2 cut(s) 239, 545
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 605
MunI CAATTG 1 cut(s) 887
Mva1269I GAATGC 2 cut(s) 379, 506
MvaI CCWGG 1 cut(s) 605
MwoI GCNNNNNNNGC 3 cut(s) 34, 605, 719
NcoI CCATGG 3 cut(s) 234, 405, 492
NdeII GATC 6 cut(s) 7, 55, 427, 458, 578, 637
NlaIII CATG 4 cut(s) 238, 409, 496, 588
NlaIV GGNNCC 2 cut(s) 362, 665
NmuCI GTSAC 2 cut(s) 727, 760
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 588
PctI GAATGC 2 cut(s) 379, 506
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 98
PflMI CCANNNNNTGG 2 cut(s) 28, 493
PkrI GCNGC 4 cut(s) 39, 328, 598, 836
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 603
PspFI CCCAGC 2 cut(s) 146, 659
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 362, 665
PspPI GGNCC 3 cut(s) 338, 349, 607
PstI CTGCAG 1 cut(s) 656
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 3 cut(s) 458, 578, 637
RsaI GTAC 2 cut(s) 421, 665
RsaNI GTAC 2 cut(s) 420, 664
RseI CAYNNNNRTG 2 cut(s) 239, 545
SaqAI TTAA 3 cut(s) 518, 669, 692
SatI GCNGC 4 cut(s) 38, 327, 597, 835
Sau3AI GATC 6 cut(s) 7, 55, 427, 458, 578, 637
Sau96I GGNCC 3 cut(s) 338, 349, 607
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 1 cut(s) 605
SetI ASST 8 cut(s) 111, 119, 211, 283, 351, 669, 682, 721
SfaNI GCATC 2 cut(s) 607, 769
SfcI CTRYAG 1 cut(s) 652
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 239, 545
Sse9I AATT 7 cut(s) 179, 249, 412, 514, 624, 738, 887
SsiI CCGC 3 cut(s) 38, 614, 634
SspI AATATT 1 cut(s) 867
SspMI CTAG 4 cut(s) 5, 342, 476, 576
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 3 cut(s) 234, 405, 492
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 5 cut(s) 10, 58, 253, 828, 901
TaqII GACCGA 1 cut(s) 516
TasI AATT 7 cut(s) 179, 249, 412, 514, 624, 738, 887
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 3 cut(s) 518, 669, 692
Tru9I TTAA 3 cut(s) 518, 669, 692
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 727, 760
TseI GCWGC 3 cut(s) 326, 596, 834
Tsp45I GTSAC 2 cut(s) 727, 760
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 2 cut(s) 28, 493
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 4 cut(s) 249, 412, 514, 624
XceI RCATGY 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 4 cut(s) 5, 342, 476, 576
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.