Rh7DG305600

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001974
Physical Location & Seq
Reverse (-)
35583061 .. 35592682
9622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG305600.1

Sequence Viewer

Length: 768 bp
ATGTCTGTACACAATTGGCAACGCCACTTCGTTTCTATAACGATGGAGTTTGTGAGCCCTGAAGGTCTTCGCATAGATGGTCGCCGCCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTGGCCAAAGCCGACGGTTCTGCTATGTTCGAGATGGGTAACACTAGAGTTATTGCTGCTGTGTATGGCCCTAAAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCATTGGTGCGCTGTGAATACACAATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCAAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATCTTGACAAACTTAATGCCTCGGTCTCAGATAGATATTTTTGTGCAAGTTCTTCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCTCTGGCAGATGCTGGAATTCCGATGCGAGATCTTGTTACTTCCTGCAGTGCTGGGTACCTCAATAGCACCCCTCTGCTTGATTTAAACTATGTAGAAGATAGTGCTGGAGGCGCTGATGTGACTTTAGGAATTATGCCGAAGTTGGACAAAGTTACTCTTCTTCAGATGGATGCTAAGTTATCTTTGGATACTTTTGAAAATGTAATGCAACTTGCAGTCGAAGGCTGCAAGGCAGTTGCAGATTACATTCGAGAAATATTGCAAGAGAATACAGAGCAATTGGAGTATCGTCGAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

255

Amino Acids

28.29

Weight (kDa)

5.39

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 32 - 162 1.5e-40 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 165 - 230 1.5e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 519
AccB7I CCANNNNNTGG 1 cut(s) 349
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 3 cut(s) 105, 268, 480
AcuI CTGAAG 2 cut(s) 81, 611
AfaI GTAC 3 cut(s) 9, 277, 521
AfiI CCNNNNNNNGG 5 cut(s) 91, 202, 285, 349, 466
AgsI TTSAA 2 cut(s) 416, 662
AjnI CCWGG 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 2 cut(s) 129, 193
ApeKI GCWGC 3 cut(s) 182, 452, 690
ApoI RAATTY 3 cut(s) 105, 268, 480
Asp700I GAANNNNTTC 1 cut(s) 66
Asp718I GGTACC 1 cut(s) 519
AspLEI GCGC 2 cut(s) 249, 578
AspS9I GGNCC 2 cut(s) 194, 205
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 169, 439, 677
BccI CCATC 5 cut(s) 37, 71, 154, 416, 625
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 461
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 3 cut(s) 171, 332, 432
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 579
BfuI GTATCC 1 cut(s) 646
BglII AGATCT 2 cut(s) 434, 493
BisI GCNGC 4 cut(s) 85, 183, 453, 691
BlsI GCNGC 4 cut(s) 86, 184, 454, 692
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 194, 205
BmiI GGNNCC 2 cut(s) 218, 521
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 4 cut(s) 369, 463, 477, 625
BpiI GAAGAC 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 90, 348, 380, 459
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 202, 285, 349, 466
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 4 cut(s) 90, 348, 380, 459
BseGI GGATG 2 cut(s) 294, 640
BseLI CCNNNNNNNGG 5 cut(s) 91, 202, 285, 349, 466
BseMII CTCAG 1 cut(s) 401
BseXI GCAGC 3 cut(s) 169, 439, 677
BseYI CCCAGC 1 cut(s) 515
BshFI GGCC 2 cut(s) 131, 195
BshNI GGYRCC 1 cut(s) 519
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 5 cut(s) 91, 202, 285, 349, 466
BsmAI GTCTC 1 cut(s) 390
BsmI GAATGC 2 cut(s) 235, 362
BsnI GGCC 2 cut(s) 131, 195
Bso31I GGTCTC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 4 cut(s) 283, 314, 434, 493
Bsp19I CCATGG 2 cut(s) 90, 348
BspACI CCGC 1 cut(s) 85
BspANI GGCC 2 cut(s) 131, 195
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 218, 521
BspMAI CTGCAG 1 cut(s) 512
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 7
BssECI CCNNGG 4 cut(s) 90, 348, 380, 459
BssMI GATC 4 cut(s) 283, 314, 434, 493
BssT1I CCWWGG 2 cut(s) 90, 348
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 627
BstAUI TGTACA 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 387, 639
BstDSI CCRYGG 2 cut(s) 90, 348
BstF5I GGATG 2 cut(s) 294, 640
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 2 cut(s) 249, 578
BstKTI GATC 4 cut(s) 286, 317, 437, 496
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 4 cut(s) 283, 314, 434, 493
BstMWI GCNNNNNNNGC 2 cut(s) 461, 575
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 459
BstSFI CTRYAG 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 169, 439, 677
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 3 cut(s) 314, 434, 493
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 3 cut(s) 314, 434, 493
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 2 cut(s) 131, 195
BtgI CCRYGG 2 cut(s) 90, 348
BtsCI GGATG 2 cut(s) 294, 640
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 2 cut(s) 249, 578
Cfr13I GGNCC 2 cut(s) 194, 205
Csp6I GTAC 3 cut(s) 8, 276, 520
CviAII CATG 3 cut(s) 91, 349, 441
CviJI RGCY 7 cut(s) 57, 131, 137, 195, 219, 464, 690
CviKI_1 RGCY 7 cut(s) 57, 131, 137, 195, 219, 464, 690
CviQI GTAC 3 cut(s) 8, 276, 520
DdeI CTNAG 2 cut(s) 387, 639
DpnI GATC 4 cut(s) 285, 316, 436, 495
DpnII GATC 4 cut(s) 283, 314, 434, 493
DraI TTTAAA 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 90, 348
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 81, 611
EcoRI GAATTC 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 90, 348
EcoT22I ATGCAT 2 cut(s) 241, 362
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 2 cut(s) 90, 348
FaeI CATG 3 cut(s) 94, 352, 444
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FatI CATG 3 cut(s) 90, 348, 440
Fnu4HI GCNGC 4 cut(s) 85, 183, 453, 691
FokI GGATG 2 cut(s) 301, 647
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 85, 183, 453, 691
FspBI CTAG 3 cut(s) 171, 332, 432
GlaI GCGC 2 cut(s) 248, 577
GluI GCNGC 4 cut(s) 85, 183, 453, 691
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 2 cut(s) 131, 195
HapII CCGG 1 cut(s) 279
HhaI GCGC 2 cut(s) 249, 578
Hin1II CATG 3 cut(s) 94, 352, 444
Hin6I GCGC 2 cut(s) 247, 576
HinP1I GCGC 2 cut(s) 247, 576
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 4 cut(s) 288, 390, 486, 630
Hpy188III TCNNGA 3 cut(s) 157, 364, 716
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 143, 759
HpyAV CCTTC 2 cut(s) 56, 680
HpyCH4III ACNGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 575
HpyF3I CTNAG 2 cut(s) 387, 639
Hsp92II CATG 3 cut(s) 94, 352, 444
HspAI GCGC 2 cut(s) 247, 576
KpnI GGTACC 1 cut(s) 523
Kzo9I GATC 4 cut(s) 283, 314, 434, 493
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 9 cut(s) 72, 292, 446, 452, 462, 473, 501, 520, 555
Lsp1109I GCAGC 3 cut(s) 169, 439, 677
LweI GCATC 4 cut(s) 369, 463, 477, 625
MaeI CTAG 3 cut(s) 171, 332, 432
MaeIII GTNAC 4 cut(s) 164, 499, 583, 616
MalI GATC 4 cut(s) 285, 316, 436, 495
MboI GATC 4 cut(s) 283, 314, 434, 493
MboII GAAGA 6 cut(s) 59, 365, 404, 572, 614, 617
MfeI CAATTG 2 cut(s) 13, 743
MflI RGATCY 3 cut(s) 314, 434, 493
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 6 cut(s) 13, 105, 268, 480, 594, 743
MluNI TGGCCA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 8 cut(s) 93, 196, 390, 419, 533, 546, 566, 752
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 2 cut(s) 241, 362
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 374, 548
MslI CAYNNNNRTG 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 2 cut(s) 13, 743
Mva1269I GAATGC 2 cut(s) 235, 362
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 461, 575
NcoI CCATGG 2 cut(s) 90, 348
NdeII GATC 4 cut(s) 283, 314, 434, 493
NlaIII CATG 3 cut(s) 94, 352, 444
NlaIV GGNNCC 2 cut(s) 218, 521
NmuCI GTSAC 1 cut(s) 583
NsiI ATGCAT 2 cut(s) 241, 362
NspI RCATGY 1 cut(s) 444
PctI GAATGC 2 cut(s) 235, 362
PdmI GAANNNNTTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 4 cut(s) 86, 184, 454, 692
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 218, 521
PspPI GGNCC 2 cut(s) 194, 205
PstI CTGCAG 1 cut(s) 512
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 3 cut(s) 314, 434, 493
RsaI GTAC 3 cut(s) 9, 277, 521
RsaNI GTAC 3 cut(s) 8, 276, 520
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 374, 548
SatI GCNGC 4 cut(s) 85, 183, 453, 691
Sau3AI GATC 4 cut(s) 283, 314, 434, 493
Sau96I GGNCC 2 cut(s) 194, 205
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 59
SetI ASST 3 cut(s) 67, 207, 525
SfaNI GCATC 4 cut(s) 369, 463, 477, 625
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 6 cut(s) 13, 105, 268, 480, 594, 743
SsiI CCGC 1 cut(s) 85
SspI AATATT 1 cut(s) 723
SspMI CTAG 3 cut(s) 171, 332, 432
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 2 cut(s) 90, 348
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 5 cut(s) 109, 156, 684, 715, 757
TaqII GACCGA 1 cut(s) 372
TasI AATT 6 cut(s) 13, 105, 268, 480, 594, 743
TatI WGTACW 1 cut(s) 7
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 374, 548
Tru9I TTAA 2 cut(s) 374, 548
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 3 cut(s) 182, 452, 690
Tsp45I GTSAC 1 cut(s) 583
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 3 cut(s) 105, 268, 480
XceI RCATGY 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 3 cut(s) 171, 332, 432
Zsp2I ATGCAT 2 cut(s) 241, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.