RchiOBHm_Chr6g0271671

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001974
Physical Location & Seq
Reverse (-)
31550273 .. 31552974
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24367

Sequence Viewer

Length: 918 bp
ATGGTCATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCTGTTTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCGTTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACTGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTGTCCAAGCAGATGGAGGAACTTTATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAAACGCTGGAATTCCAATGCGGGATATCGTTACTTCGTGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGCGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAGTAAGCGCTTTTCATTTTTTGTTTTTTTTTTCAAATGACAAGTTATCCATCGTCGATCATGTGGATGAACACTGCTTATTGAGTACTTATGACGGATATTATTGGAGAACACAAAGCAATTGCAGTATCGTCGAGGAACATAGTTTCATAGCATGGCTGGCTACTCTATGTAGATGTGGTGTACTCTATGGAAGCAAGCTTGGAAGTGGACCACACTTGGTTGCTGTACTCTTGTTTTGGATTTTGAAAATAGTAACATGGCGGAAATTGGTTAATTTCAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

305

Amino Acids

33.82

Weight (kDa)

5.78

Isoelectric Point (pI)

23.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 3 - 132 2.3e-39 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 135 - 200 8.1e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 429
AccB7I CCANNNNNTGG 1 cut(s) 259
AciI CCGC 2 cut(s) 400, 892
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 3 cut(s) 15, 178, 390
AcuI CTGAAG 2 cut(s) 230, 521
AfaI GTAC 5 cut(s) 187, 431, 715, 813, 858
AfeI AGCGCT 1 cut(s) 637
AfiI CCNNNNNNNGG 3 cut(s) 112, 195, 259
AgsI TTSAA 4 cut(s) 572, 663, 877, 910
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 1 cut(s) 829
AluI AGCT 1 cut(s) 829
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 1 cut(s) 219
Aor51HI AGCGCT 1 cut(s) 637
AoxI GGCC 2 cut(s) 103, 372
ApeKI GCWGC 3 cut(s) 92, 362, 600
ApoI RAATTY 3 cut(s) 15, 178, 390
Asp718I GGTACC 1 cut(s) 429
AspLEI GCGC 2 cut(s) 488, 638
AspS9I GGNCC 4 cut(s) 104, 115, 373, 839
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 115, 839
BanI GGYRCC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 79, 349, 587
BccI CCATC 4 cut(s) 64, 326, 535, 686
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 742, 776
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 2 cut(s) 108, 242
BfoI RGCGCY 2 cut(s) 489, 639
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 3 cut(s) 93, 363, 601
BlsI GCNGC 3 cut(s) 94, 364, 602
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 2 cut(s) 115, 839
BmgT120I GGNCC 4 cut(s) 104, 115, 373, 839
BmiI GGNNCC 2 cut(s) 128, 431
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 4 cut(s) 171, 258, 290, 369
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 195, 259
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 4 cut(s) 171, 258, 290, 369
BseGI GGATG 3 cut(s) 204, 550, 700
BseLI CCNNNNNNNGG 3 cut(s) 112, 195, 259
BseMII CTCAG 1 cut(s) 311
BseXI GCAGC 3 cut(s) 79, 349, 587
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 439
BshFI GGCC 2 cut(s) 105, 374
BshNI GGYRCC 1 cut(s) 429
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 112, 195, 259
BsmAI GTCTC 1 cut(s) 300
BsmI GAATGC 2 cut(s) 145, 272
BsnI GGCC 2 cut(s) 105, 374
Bso31I GGTCTC 1 cut(s) 300
Bsp143I GATC 3 cut(s) 193, 224, 685
Bsp19I CCATGG 2 cut(s) 171, 258
BspACI CCGC 2 cut(s) 400, 892
BspANI GGCC 2 cut(s) 105, 374
BspCNI CTCAG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 128, 431
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 429
BspTNI GGTCTC 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 171, 258, 290, 369
BssMI GATC 3 cut(s) 193, 224, 685
BssT1I CCWWGG 2 cut(s) 171, 258
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 789, 827
BstDEI CTNAG 2 cut(s) 297, 549
BstDSI CCRYGG 2 cut(s) 171, 258
BstF5I GGATG 3 cut(s) 204, 550, 700
BstH2I RGCGCY 2 cut(s) 489, 639
BstHHI GCGC 2 cut(s) 488, 638
BstKTI GATC 3 cut(s) 196, 227, 688
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 3 cut(s) 193, 224, 685
BstMWI GCNNNNNNNGC 3 cut(s) 371, 485, 788
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 79, 349, 587
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 2 cut(s) 151, 332
BstYI RGATCY 1 cut(s) 224
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 2 cut(s) 105, 374
BtgI CCRYGG 2 cut(s) 171, 258
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 204, 550, 700
BtsI GCAGTG 2 cut(s) 427, 700
BtsIMutI CAGTG 2 cut(s) 427, 700
Cac8I GCNNGC 2 cut(s) 789, 827
CciI TCATGA 1 cut(s) 6
CfoI GCGC 2 cut(s) 488, 638
Cfr13I GGNCC 4 cut(s) 104, 115, 373, 839
Csp6I GTAC 5 cut(s) 186, 430, 714, 812, 857
CviAII CATG 7 cut(s) 7, 172, 259, 351, 689, 783, 888
CviJI RGCY 9 cut(s) 41, 47, 105, 129, 374, 600, 787, 791, 829
CviKI_1 RGCY 9 cut(s) 41, 47, 105, 129, 374, 600, 787, 791, 829
CviQI GTAC 5 cut(s) 186, 430, 714, 812, 857
DdeI CTNAG 2 cut(s) 297, 549
DpnI GATC 3 cut(s) 195, 226, 687
DpnII GATC 3 cut(s) 193, 224, 685
DraI TTTAAA 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
EciI GGCGGA 1 cut(s) 907
Eco130I CCWWGG 2 cut(s) 171, 258
Eco31I GGTCTC 1 cut(s) 300
Eco32I GATATC 2 cut(s) 237, 406
Eco47I GGWCC 2 cut(s) 115, 839
Eco47III AGCGCT 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 230, 521
EcoRI GAATTC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 2 cut(s) 237, 406
EcoT14I CCWWGG 2 cut(s) 171, 258
EcoT22I ATGCAT 1 cut(s) 272
ErhI CCWWGG 2 cut(s) 171, 258
FaeI CATG 7 cut(s) 10, 175, 262, 354, 692, 786, 891
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FatI CATG 7 cut(s) 6, 171, 258, 350, 688, 782, 887
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 93, 363, 601
FokI GGATG 3 cut(s) 211, 557, 707
Fsp4HI GCNGC 3 cut(s) 93, 363, 601
FspBI CTAG 2 cut(s) 108, 242
GlaI GCGC 2 cut(s) 487, 637
GluI GCNGC 3 cut(s) 93, 363, 601
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 2 cut(s) 489, 639
HaeIII GGCC 2 cut(s) 105, 374
HapII CCGG 1 cut(s) 189
HhaI GCGC 2 cut(s) 488, 638
Hin1II CATG 7 cut(s) 10, 175, 262, 354, 692, 786, 891
Hin6I GCGC 2 cut(s) 486, 636
HinP1I GCGC 2 cut(s) 486, 636
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 1 cut(s) 529
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 812, 839
Hpy188I TCNGA 3 cut(s) 198, 300, 540
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 812, 839
Hpy99I CGWCG 3 cut(s) 53, 686, 764
HpyAV CCTTC 2 cut(s) 205, 590
HpyCH4III ACNGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 485, 788
HpyF3I CTNAG 2 cut(s) 297, 549
Hsp92II CATG 7 cut(s) 10, 175, 262, 354, 692, 786, 891
HspAI GCGC 2 cut(s) 486, 636
KpnI GGTACC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 193, 224, 685
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 7 cut(s) 202, 356, 372, 383, 411, 465, 773
Lsp1109I GCAGC 3 cut(s) 79, 349, 587
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 108, 242
MaeIII GTNAC 5 cut(s) 74, 409, 493, 526, 883
MalI GATC 3 cut(s) 195, 226, 687
MboI GATC 3 cut(s) 193, 224, 685
MboII GAAGA 4 cut(s) 275, 482, 524, 527
MfeI CAATTG 1 cut(s) 748
MflI RGATCY 1 cut(s) 224
MluCI AATT 7 cut(s) 15, 178, 390, 504, 748, 896, 904
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 2 cut(s) 498, 540
MnlI CCTC 7 cut(s) 3, 106, 300, 329, 456, 476, 757
Mph1103I ATGCAT 1 cut(s) 272
MseI TTAA 4 cut(s) 284, 435, 458, 903
MslI CAYNNNNRTG 2 cut(s) 311, 693
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 748
Mva1269I GAATGC 2 cut(s) 145, 272
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 371, 485, 788
NcoI CCATGG 2 cut(s) 171, 258
NdeII GATC 3 cut(s) 193, 224, 685
NlaIII CATG 7 cut(s) 10, 175, 262, 354, 692, 786, 891
NlaIV GGNNCC 2 cut(s) 128, 431
NmuCI GTSAC 2 cut(s) 493, 526
NsiI ATGCAT 1 cut(s) 272
NspI RCATGY 1 cut(s) 354
PagI TCATGA 1 cut(s) 6
PctI GAATGC 2 cut(s) 145, 272
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 3 cut(s) 94, 364, 602
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 128, 431
PspPI GGNCC 4 cut(s) 104, 115, 373, 839
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 5 cut(s) 187, 431, 715, 813, 858
RsaNI GTAC 5 cut(s) 186, 430, 714, 812, 857
RseI CAYNNNNRTG 2 cut(s) 311, 693
SaqAI TTAA 4 cut(s) 284, 435, 458, 903
SatI GCNGC 3 cut(s) 93, 363, 601
Sau3AI GATC 3 cut(s) 193, 224, 685
Sau96I GGNCC 4 cut(s) 104, 115, 373, 839
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 1 cut(s) 371
SetI ASST 4 cut(s) 117, 435, 448, 831
SfaNI GCATC 1 cut(s) 535
SinI GGWCC 2 cut(s) 115, 839
SmiMI CAYNNNNRTG 2 cut(s) 311, 693
Sse9I AATT 7 cut(s) 15, 178, 390, 504, 748, 896, 904
SsiI CCGC 2 cut(s) 400, 892
SspMI CTAG 2 cut(s) 108, 242
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 2 cut(s) 171, 258
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 4 cut(s) 19, 594, 684, 762
TaqII GACCGA 1 cut(s) 282
TasI AATT 7 cut(s) 15, 178, 390, 504, 748, 896, 904
TatI WGTACW 3 cut(s) 713, 811, 856
Tru1I TTAA 4 cut(s) 284, 435, 458, 903
Tru9I TTAA 4 cut(s) 284, 435, 458, 903
TscAI CASTG 2 cut(s) 427, 707
TseFI GTSAC 2 cut(s) 493, 526
TseI GCWGC 3 cut(s) 92, 362, 600
Tsp45I GTSAC 2 cut(s) 493, 526
TspDTI ATGAA 3 cut(s) 632, 711, 766
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 2 cut(s) 427, 707
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 115, 839
XapI RAATTY 3 cut(s) 15, 178, 390
XceI RCATGY 1 cut(s) 354
XspI CTAG 2 cut(s) 108, 242
ZrmI AGTACT 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.