Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001974

Physical Location & Seq

Genomic Coordinates Forward (+)

903541 .. 906949

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G011800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGTATGTGAGCCCTGAAGGCCTTCGCTTAGATGGTCGCCGCCCCATGGAAATGAGACAAATTCGTGCAGAGATTGGTGTTGTTGCCAAAGCCGCCGGTTCTGCTTTGTTTGAGATGGGTAACACCAAAGTCATTGCTGCAGTGTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAATTGAATGACAGCGCACTGGTGCGATGTGAGTACACCATGGCAAATTTTAGTACTGGGGATCGCATGAGAAAACCAAAGGGGGATAGGCGATCAACAGAGATATCTTTAGTTATTCGCCAAACCATGGAAGCATGCATTATGACACATTTAATGCCTCGGTCTCAGATTGATATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGCATTAATGCTGCAAGCCTGGCCCTTGCAGATGCTGGAATTCCAATGCGTGATCTTGTTACCTCCTGTAGTGCTGGCTATCTTAATAGCACACCTCTGCTTGATTTAAACTACATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGCATTTTGCCAAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAATTATCAGTGGAAACTTTTGAAAACGTAATGCAACTTGCGATCGAAGGCTGCAAGGCGGTTGCAACCTACATTCGAGAGGTATTACTAGAGAATACAAAGCAATTGGAGTATCGCCGAGGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

242

Amino Acids

26.48

Weight (kDa)

5.99

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61620 AT3G61620
fragaria_vesca	FvH4_2g10710 FvH4_2g10710 FvH4_4g15330 FvH4_4g15330
malus_domestica	MD01G1224600.v1.1 MD13G1191700.v1.1 MD16G1191800.v1.1
prunus_persica	Prupe.1G011800_v2.0.a1
pyrus_communis	pycom16g16150
rosa_chinensis	RchiOBHm_Chr4g0416511 RchiOBHm_Chr6g0268411 RchiOBHm_Chr6g0271671 RchiOBHm_Chr7g0217091
rosa_laevigata	RLG00000007977 RLG00000013911
rosa_multiflora	Rmu_sc0002404.1_g000014 Rmu_sc0003132.1_g000002 Rmu_sc0003722.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242590 Rroxscaffold_5G00360380 Rroxscaffold_7G00199820
rosa_rugosa	Rorug04G0142300 Rorug06G0041900 Rorug07G0165900 Rorug07G0166000 Rorug07G0166100 Rorug07G0166100
rosa_samantha	Rh4AG204800 Rh4BG202600 Rh4CG216000 Rh4DG202000 Rh6AG161200 Rh6BG165500 Rh6BG165600 Rh6CG159100 Rh6DG151400 Rh7AG305400 Rh7BG297000 Rh7CG324500 Rh7DG305600
rosa_wichuraiana	Rw4G017320 Rw6G013950 Rw7G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AciI	CCGC	3 cut(s)	43, 96, 656
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	3 cut(s)	63, 226, 438
AcuI	CTGAAG	2 cut(s)	39, 569
AfaI	GTAC	2 cut(s)	215, 235
AfiI	CCNNNNNNNGG	3 cut(s)	49, 160, 307
AgsI	TTSAA	2 cut(s)	187, 620
AjnI	CCWGG	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	52, 348
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	22, 151, 420
ApeKI	GCWGC	3 cut(s)	140, 410, 648
ApoI	RAATTY	3 cut(s)	63, 226, 438
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	152, 163, 421
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	127, 397, 635
BccI	CCATC	4 cut(s)	29, 112, 374, 583
BciT130I	CCWGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	52, 348
BfaI	CTAG	3 cut(s)	156, 390, 686
BfmI	CTRYAG	2 cut(s)	141, 466
BglI	GCCNNNNNGGC	1 cut(s)	21
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	5 cut(s)	43, 96, 141, 411, 649
BlsI	GCNGC	5 cut(s)	44, 97, 142, 412, 650
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	152, 163, 421
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	421, 583
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	5 cut(s)	48, 219, 306, 338, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 160, 307
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	204, 241
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	5 cut(s)	48, 219, 306, 338, 715
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	3 cut(s)	49, 160, 307
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	204, 241
BseXI	GCAGC	3 cut(s)	127, 397, 635
BsgI	GTGCAG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	3 cut(s)	24, 153, 422
BsiEI	CGRYCG	1 cut(s)	642
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	49, 160, 307
BsmAI	GTCTC	2 cut(s)	52, 348
BsnI	GGCC	3 cut(s)	24, 153, 422
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	241, 272, 392, 451, 639
Bsp19I	CCATGG	3 cut(s)	48, 219, 306
BspACI	CCGC	3 cut(s)	43, 96, 656
BspANI	GGCC	3 cut(s)	24, 153, 422
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	204, 241
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	5 cut(s)	48, 219, 306, 338, 715
BssMI	GATC	5 cut(s)	241, 272, 392, 451, 639
BssT1I	CCWWGG	3 cut(s)	48, 219, 306
Bst2UI	CCWGG	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	585
BstC8I	GCNNGC	4 cut(s)	316, 400, 415, 475
BstDEI	CTNAG	2 cut(s)	31, 345
BstDSI	CCRYGG	3 cut(s)	48, 219, 306
BstF5I	GGATG	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	5 cut(s)	244, 275, 395, 454, 642
BstMAI	GTCTC	2 cut(s)	52, 348
BstMBI	GATC	5 cut(s)	241, 272, 392, 451, 639
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 95, 104, 419, 533
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	2 cut(s)	318, 402
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	2 cut(s)	141, 466
BstV1I	GCAGC	3 cut(s)	127, 397, 635
BstX2I	RGATCY	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	24, 153, 422
BtgI	CCRYGG	3 cut(s)	48, 219, 306
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 197, 612
Cac8I	GCNNGC	4 cut(s)	316, 400, 415, 475
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	152, 163, 421
Csp6I	GTAC	2 cut(s)	214, 234
CviAII	CATG	6 cut(s)	49, 220, 247, 307, 315, 399
CviJI	RGCY	9 cut(s)	15, 24, 95, 153, 177, 417, 422, 477, 648
CviKI_1	RGCY	9 cut(s)	15, 24, 95, 153, 177, 417, 422, 477, 648
CviQI	GTAC	2 cut(s)	214, 234
DdeI	CTNAG	2 cut(s)	31, 345
DpnI	GATC	5 cut(s)	243, 274, 394, 453, 641
DpnII	GATC	5 cut(s)	241, 272, 392, 451, 639
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	3 cut(s)	48, 219, 306
Eco147I	AGGCCT	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	39, 569
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	3 cut(s)	48, 219, 306
EcoT22I	ATGCAT	2 cut(s)	320, 404
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	3 cut(s)	48, 219, 306
FaeI	CATG	6 cut(s)	52, 223, 250, 310, 318, 402
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FatI	CATG	6 cut(s)	48, 219, 246, 306, 314, 398
Fnu4HI	GCNGC	5 cut(s)	43, 96, 141, 411, 649
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	43, 96, 141, 411, 649
FspBI	CTAG	3 cut(s)	156, 390, 686
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	43, 96, 141, 411, 649
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	24, 153, 422
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	52, 223, 250, 310, 318, 402
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	348, 588
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	3 cut(s)	14, 35, 638
HpyCH4IV	ACGT	1 cut(s)	624
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 95, 104, 419, 533
HpyF3I	CTNAG	2 cut(s)	31, 345
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	6 cut(s)	52, 223, 250, 310, 318, 402
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	241, 272, 392, 451, 639
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	3 cut(s)	127, 397, 635
LweI	GCATC	2 cut(s)	421, 583
MaeI	CTAG	3 cut(s)	156, 390, 686
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	4 cut(s)	122, 457, 541, 574
MalI	GATC	5 cut(s)	243, 274, 394, 453, 641
MboI	GATC	5 cut(s)	241, 272, 392, 451, 639
MboII	GAAGA	3 cut(s)	530, 572, 575
MfeI	CAATTG	2 cut(s)	182, 701
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	6 cut(s)	63, 182, 226, 438, 599, 701
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	154, 348, 377, 472, 504, 524, 670, 710
Mph1103I	ATGCAT	2 cut(s)	320, 404
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	4 cut(s)	332, 405, 483, 506
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	2 cut(s)	182, 701
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	5 cut(s)	21, 95, 104, 419, 533
NcoI	CCATGG	3 cut(s)	48, 219, 306
NdeII	GATC	5 cut(s)	241, 272, 392, 451, 639
NlaIII	CATG	6 cut(s)	52, 223, 250, 310, 318, 402
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	541, 574
NsiI	ATGCAT	2 cut(s)	320, 404
NspI	RCATGY	2 cut(s)	318, 402
PaeI	GCATGC	2 cut(s)	318, 402
PceI	AGGCCT	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	44, 97, 142, 412, 650
Ple19I	CGATCG	1 cut(s)	642
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	152, 163, 421
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	392
PvuI	CGATCG	1 cut(s)	642
RsaI	GTAC	2 cut(s)	215, 235
RsaNI	GTAC	2 cut(s)	214, 234
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	332, 405, 483, 506
SatI	GCNGC	5 cut(s)	43, 96, 141, 411, 649
Sau3AI	GATC	5 cut(s)	241, 272, 392, 451, 639
Sau96I	GGNCC	3 cut(s)	152, 163, 421
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	7 cut(s)	165, 464, 496, 535, 627, 668, 681
SfaNI	GCATC	2 cut(s)	421, 583
SfcI	CTRYAG	2 cut(s)	141, 466
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	53
SphI	GCATGC	2 cut(s)	318, 402
Sse9I	AATT	6 cut(s)	63, 182, 226, 438, 599, 701
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	43, 96, 656
SspMI	CTAG	3 cut(s)	156, 390, 686
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	3 cut(s)	48, 219, 306
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	642, 673
TaqII	GACCGA	1 cut(s)	330
TasI	AATT	6 cut(s)	63, 182, 226, 438, 599, 701
TatI	WGTACW	2 cut(s)	213, 233
TauI	GCSGC	2 cut(s)	45, 98
Tru1I	TTAA	4 cut(s)	332, 405, 483, 506
Tru9I	TTAA	4 cut(s)	332, 405, 483, 506
TscAI	CASTG	3 cut(s)	150, 204, 612
TseFI	GTSAC	2 cut(s)	541, 574
TseI	GCWGC	3 cut(s)	140, 410, 648
Tsp45I	GTSAC	2 cut(s)	541, 574
TspRI	CASTG	3 cut(s)	150, 204, 612
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	3 cut(s)	63, 226, 438
XceI	RCATGY	2 cut(s)	318, 402
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	156, 390, 686
ZrmI	AGTACT	1 cut(s)	235
Zsp2I	ATGCAT	2 cut(s)	320, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.