Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001974

Physical Location & Seq

Genomic Coordinates Forward (+)

16940997 .. 16943026

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1191800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCAAATTTTAGTACTGGAGATCGCATGAGGAAACCAAAGGGTGATAGACGATCCACAGAGATTTCTCTTGTTATTCGGCAAACCATGGAAGCATGCATTATGACACATTTAATGCCTCGGACTCAGTTTGATATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTTCAGATGCTGGAATTCCAATGCGCGATCTTGTTACTTCTTGTAGTGCCGGTTACCTTAATAGCACACCTCTACTTGATTTAAACTATGTAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGTATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAATTACCATTGGATATTTTTGAAAATGTAATGCAACTTGCAATTGAAGGCTGCAAGGCGGTTGCAACATATATTCGAGAAATTTGTGGTTGTTCGTATGGAGTTCGAGGCGGCTGTAACATGAAGACGGTGTTTGATGGAGGAACAAGGCTTAAAATTAATGGGAACTTTAACGAAAAGCACCTGGTACTGTTCACTTTAACGAAAAACCACATTTTTACACTAAAAAGTCAATCCTGTTACTATTTACTTTACCCTTTATTTTGTCCTTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

219

Amino Acids

24.09

Weight (kDa)

8.04

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	1 - 75	7.5e-19	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	78 - 143	6.7e-12	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61620 AT3G61620
fragaria_vesca	FvH4_2g10710 FvH4_2g10710 FvH4_4g15330 FvH4_4g15330
malus_domestica	MD01G1224600.v1.1 MD13G1191700.v1.1 MD16G1191800.v1.1
prunus_persica	Prupe.1G011800_v2.0.a1
pyrus_communis	pycom16g16150
rosa_chinensis	RchiOBHm_Chr4g0416511 RchiOBHm_Chr6g0268411 RchiOBHm_Chr6g0271671 RchiOBHm_Chr7g0217091
rosa_laevigata	RLG00000007977 RLG00000013911
rosa_multiflora	Rmu_sc0002404.1_g000014 Rmu_sc0003132.1_g000002 Rmu_sc0003722.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242590 Rroxscaffold_5G00360380 Rroxscaffold_7G00199820
rosa_rugosa	Rorug04G0142300 Rorug06G0041900 Rorug07G0165900 Rorug07G0166000 Rorug07G0166100 Rorug07G0166100
rosa_samantha	Rh4AG204800 Rh4BG202600 Rh4CG216000 Rh4DG202000 Rh6AG161200 Rh6BG165500 Rh6BG165600 Rh6CG159100 Rh6DG151400 Rh7AG305400 Rh7BG297000 Rh7CG324500 Rh7DG305600
rosa_wichuraiana	Rw4G017320 Rw6G013950 Rw7G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	437, 489
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	3 cut(s)	7, 219, 459
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	16, 567
AgsI	TTSAA	2 cut(s)	401, 425
AjnI	CCWGG	2 cut(s)	198, 561
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	191, 429
ApoI	RAATTY	3 cut(s)	7, 219, 459
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	178, 416
BccI	CCATC	3 cut(s)	155, 364, 509
BciT130I	CCWGG	2 cut(s)	200, 563
BfaI	CTAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	3 cut(s)	192, 430, 490
BlsI	GCNGC	3 cut(s)	193, 431, 491
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	200, 563
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	200, 563
BmsI	GCATC	2 cut(s)	202, 364
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	39, 330
BsaJI	CCNNGG	3 cut(s)	87, 119, 198
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	200, 563
BseDI	CCNNGG	3 cut(s)	87, 119, 198
BseGI	GGATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	178, 416
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	255
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	22, 53, 173, 232
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	437, 489
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	87, 119, 198
BssMI	GATC	4 cut(s)	22, 53, 173, 232
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	200, 563
Bst4CI	ACNGT	2 cut(s)	508, 570
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	87
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	25, 56, 176, 235
BstMBI	GATC	4 cut(s)	22, 53, 173, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 314
BstNI	CCWGG	2 cut(s)	200, 563
BstNSI	RCATGY	2 cut(s)	99, 183
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	198, 561
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	178, 416
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	202
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	15, 566
CviAII	CATG	5 cut(s)	28, 88, 96, 180, 499
CviJI	RGCY	4 cut(s)	203, 429, 492, 529
CviKI_1	RGCY	4 cut(s)	203, 429, 492, 529
CviQI	GTAC	2 cut(s)	15, 566
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	4 cut(s)	24, 55, 175, 234
DpnII	GATC	4 cut(s)	22, 53, 173, 232
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	198, 561
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	31, 91, 99, 183, 502
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	5 cut(s)	27, 87, 95, 179, 498
Fnu4HI	GCNGC	3 cut(s)	192, 430, 490
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	3 cut(s)	192, 430, 490
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	3 cut(s)	192, 430, 490
GsuI	CTGGAG	2 cut(s)	39, 330
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	31, 91, 99, 183, 502
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	124, 358
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	3 cut(s)	123, 211, 369
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	2 cut(s)	508, 570
HpyCH4V	TGCA	8 cut(s)	99, 145, 179, 194, 412, 419, 432, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 314
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	31, 91, 99, 183, 502
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	22, 53, 173, 232
LpnPI	CCDG	9 cut(s)	3, 185, 201, 212, 268, 294, 548, 575, 628
Lsp1109I	GCAGC	2 cut(s)	178, 416
LweI	GCATC	2 cut(s)	202, 364
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	6 cut(s)	238, 257, 322, 355, 494, 617
MalI	GATC	4 cut(s)	24, 55, 175, 234
MboI	GATC	4 cut(s)	22, 53, 173, 232
MboII	GAAGA	4 cut(s)	311, 353, 356, 514
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	6 cut(s)	7, 219, 380, 420, 459, 534
MlyI	GAGTC	2 cut(s)	118, 352
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	7 cut(s)	24, 129, 158, 285, 305, 479, 512
Mph1103I	ATGCAT	1 cut(s)	101
MseI	TTAA	8 cut(s)	113, 264, 287, 531, 537, 549, 578, 655
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	200, 563
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	200, 563
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	200, 314
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	4 cut(s)	22, 53, 173, 232
NlaIII	CATG	5 cut(s)	31, 91, 99, 183, 502
NmuCI	GTSAC	2 cut(s)	322, 355
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	2 cut(s)	99, 183
PaeI	GCATGC	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	193, 431, 491
PleI	GAGTC	2 cut(s)	118, 352
PpsI	GAGTC	2 cut(s)	118, 352
PshBI	ATTAAT	1 cut(s)	537
Psp6I	CCWGG	2 cut(s)	198, 561
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	198, 561
PspPI	GGNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	2 cut(s)	16, 567
RsaNI	GTAC	2 cut(s)	15, 566
SaqAI	TTAA	8 cut(s)	113, 264, 287, 531, 537, 549, 578, 655
SatI	GCNGC	3 cut(s)	192, 430, 490
Sau3AI	GATC	4 cut(s)	22, 53, 173, 232
Sau96I	GGNCC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	118, 352
ScrFI	CCNGG	2 cut(s)	200, 563
SetI	ASST	5 cut(s)	264, 277, 316, 334, 564
SexAI	ACCWGGT	1 cut(s)	561
SfaNI	GCATC	2 cut(s)	202, 364
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	6 cut(s)	7, 219, 380, 420, 459, 534
SsiI	CCGC	2 cut(s)	437, 489
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	198, 561
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	508, 570
TaqI	TCGA	2 cut(s)	454, 484
TasI	AATT	6 cut(s)	7, 219, 380, 420, 459, 534
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	492
Tru1I	TTAA	8 cut(s)	113, 264, 287, 531, 537, 549, 578, 655
Tru9I	TTAA	8 cut(s)	113, 264, 287, 531, 537, 549, 578, 655
TseFI	GTSAC	2 cut(s)	322, 355
TseI	GCWGC	2 cut(s)	191, 429
Tsp45I	GTSAC	2 cut(s)	322, 355
TspDTI	ATGAA	1 cut(s)	515
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	3 cut(s)	7, 219, 459
XceI	RCATGY	2 cut(s)	99, 183
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.