Rh4AG204800

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001974
Physical Location & Seq
Reverse (-)
49149031 .. 49152003
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG204800.1

Sequence Viewer

Length: 636 bp
ATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGCCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCTGACGGTTCTGCTATGTTTGAGATGGGCAACACCAAAGTTGTTGCTGCCGTATATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCATTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAATTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATCTTGTTACTTCCTGCAGTGCTGGGTACCTTAACAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGATAAAGTGACTCTTCTTCAGGTTCTTAAAATCATAATCTGTTATCTGATTTTCTCTTCCCAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

211

Amino Acids

23.12

Weight (kDa)

6.35

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 18 - 148 3.1e-41 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 151 - 196 1.3e-07 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 1 cut(s) 448
AclWI GGATC 2 cut(s) 267, 459
AcsI RAATTY 4 cut(s) 63, 226, 328, 438
AcuI CTGAAG 2 cut(s) 39, 569
AfaI GTAC 2 cut(s) 235, 479
AfiI CCNNNNNNNGG 4 cut(s) 49, 160, 243, 307
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 267, 459
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 151, 420
ApeKI GCWGC 2 cut(s) 140, 410
ApoI RAATTY 4 cut(s) 63, 226, 328, 438
Asp700I GAANNNNTTC 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 152, 163, 421
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 127, 397
BccI CCATC 3 cut(s) 29, 112, 374
BceAI ACGGC 2 cut(s) 27, 128
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 3 cut(s) 156, 290, 390
BfmI CTRYAG 1 cut(s) 466
BglII AGATCT 1 cut(s) 392
BisI GCNGC 2 cut(s) 141, 411
BlsI GCNGC 2 cut(s) 142, 412
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 152, 163, 421
BmiI GGNNCC 2 cut(s) 176, 479
BmrFI CCNGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 5 cut(s) 48, 219, 306, 338, 417
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 160, 243, 307
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 5 cut(s) 48, 219, 306, 338, 417
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 4 cut(s) 49, 160, 243, 307
BseMII CTCAG 1 cut(s) 359
BseXI GCAGC 2 cut(s) 127, 397
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 2 cut(s) 153, 422
BshNI GGYRCC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 49, 160, 243, 307
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 193, 320
BsnI GGCC 2 cut(s) 153, 422
Bso31I GGTCTC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 241, 272, 392, 451
Bsp19I CCATGG 3 cut(s) 48, 219, 306
BspACI CCGC 1 cut(s) 448
BspANI GGCC 2 cut(s) 153, 422
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 176, 479
BspMAI CTGCAG 1 cut(s) 470
BspPI GGATC 2 cut(s) 267, 459
BspT107I GGYRCC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 348
BssECI CCNNGG 5 cut(s) 48, 219, 306, 338, 417
BssMI GATC 4 cut(s) 241, 272, 392, 451
BssT1I CCWWGG 3 cut(s) 48, 219, 306
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 585, 628
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 3 cut(s) 48, 219, 306
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 4 cut(s) 244, 275, 395, 454
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 4 cut(s) 241, 272, 392, 451
BstMWI GCNNNNNNNGC 2 cut(s) 419, 533
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 127, 397
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 3 cut(s) 272, 392, 451
BstXI CCANNNNNNTGG 2 cut(s) 199, 380
BstYI RGATCY 3 cut(s) 272, 392, 451
BsuRI GGCC 2 cut(s) 153, 422
BtgI CCRYGG 3 cut(s) 48, 219, 306
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 475
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 152, 163, 421
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 234, 478
CviAII CATG 4 cut(s) 49, 220, 307, 399
CviJI RGCY 6 cut(s) 15, 89, 95, 153, 177, 422
CviKI_1 RGCY 6 cut(s) 15, 89, 95, 153, 177, 422
CviQI GTAC 2 cut(s) 234, 478
DdeI CTNAG 1 cut(s) 345
DpnI GATC 4 cut(s) 243, 274, 394, 453
DpnII GATC 4 cut(s) 241, 272, 392, 451
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 585, 628
EarI CTCTTC 2 cut(s) 585, 628
Eco130I CCWWGG 3 cut(s) 48, 219, 306
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 39, 569
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 48, 219, 306
EcoT22I ATGCAT 2 cut(s) 199, 320
ErhI CCWWGG 3 cut(s) 48, 219, 306
FaeI CATG 4 cut(s) 52, 223, 310, 402
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 30
FatI CATG 4 cut(s) 48, 219, 306, 398
FauI CCCGC 1 cut(s) 441
Fnu4HI GCNGC 2 cut(s) 141, 411
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 141, 411
FspBI CTAG 3 cut(s) 156, 290, 390
GluI GCNGC 2 cut(s) 141, 411
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 2 cut(s) 153, 422
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 440
Hin1II CATG 4 cut(s) 52, 223, 310, 402
HinfI GANTC 1 cut(s) 577
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 246, 348, 615
HpyAV CCTTC 2 cut(s) 14, 253
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 7 cut(s) 197, 318, 364, 398, 413, 428, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 533
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 4 cut(s) 52, 223, 310, 402
KpnI GGTACC 1 cut(s) 481
Kzo9I GATC 4 cut(s) 241, 272, 392, 451
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 9 cut(s) 30, 250, 404, 420, 431, 459, 478, 513, 572
Lsp1109I GCAGC 2 cut(s) 127, 397
MaeI CTAG 3 cut(s) 156, 290, 390
MaeIII GTNAC 3 cut(s) 457, 541, 574
MalI GATC 4 cut(s) 243, 274, 394, 453
MboI GATC 4 cut(s) 241, 272, 392, 451
MboII GAAGA 6 cut(s) 17, 323, 530, 572, 575, 615
MflI RGATCY 3 cut(s) 272, 392, 451
MluCI AATT 5 cut(s) 63, 226, 328, 438, 552
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 6 cut(s) 51, 154, 348, 377, 504, 524
Mph1103I ATGCAT 2 cut(s) 199, 320
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 5 cut(s) 332, 483, 506, 594, 634
MslI CAYNNNNRTG 2 cut(s) 53, 359
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 2 cut(s) 193, 320
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 419, 533
NcoI CCATGG 3 cut(s) 48, 219, 306
NdeII GATC 4 cut(s) 241, 272, 392, 451
NlaIII CATG 4 cut(s) 52, 223, 310, 402
NlaIV GGNNCC 2 cut(s) 176, 479
NmuCI GTSAC 2 cut(s) 541, 574
NsiI ATGCAT 2 cut(s) 199, 320
NspI RCATGY 1 cut(s) 402
PctI GAATGC 2 cut(s) 193, 320
PdmI GAANNNNTTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 2 cut(s) 142, 412
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 176, 479
PspPI GGNCC 3 cut(s) 152, 163, 421
PstI CTGCAG 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 272, 392, 451
RsaI GTAC 2 cut(s) 235, 479
RsaNI GTAC 2 cut(s) 234, 478
RseI CAYNNNNRTG 2 cut(s) 53, 359
SaqAI TTAA 5 cut(s) 332, 483, 506, 594, 634
SatI GCNGC 2 cut(s) 141, 411
Sau3AI GATC 4 cut(s) 241, 272, 392, 451
Sau96I GGNCC 3 cut(s) 152, 163, 421
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 419
SetI ASST 7 cut(s) 25, 97, 165, 483, 496, 535, 591
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 53, 359
Sse9I AATT 5 cut(s) 63, 226, 328, 438, 552
SsiI CCGC 1 cut(s) 448
SspMI CTAG 3 cut(s) 156, 290, 390
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 3 cut(s) 48, 219, 306
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 67
TaqII GACCGA 1 cut(s) 330
TasI AATT 5 cut(s) 63, 226, 328, 438, 552
Tru1I TTAA 5 cut(s) 332, 483, 506, 594, 634
Tru9I TTAA 5 cut(s) 332, 483, 506, 594, 634
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 541, 574
TseI GCWGC 2 cut(s) 140, 410
Tsp45I GTSAC 2 cut(s) 541, 574
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 4 cut(s) 63, 226, 328, 438
XceI RCATGY 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 3 cut(s) 156, 290, 390
Zsp2I ATGCAT 2 cut(s) 199, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.