Rh6CG159100

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001974
Physical Location & Seq
Reverse (-)
20653295 .. 20661008
7714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG159100.1

Sequence Viewer

Length: 651 bp
ATGCTTCTTTCAATAGATGAAGGGCGCTGCGTGCATGTCATCAAAAGAGACTTGGGTGAGCCAGACATAATTGTCAGGGAGCTATTGCGGCCTGGGGGCTATCTGAAATTGATTGATTTGGTTCTTGAGGACCAACAGATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGTCGTCCCATGGAAATGAGACAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCTGTTTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCGTTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATAAGAAAACCGAAGGGGGACAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATATCGTTACTTCGTGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGAAAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

216

Amino Acids

23.88

Weight (kDa)

5.98

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 64 - 194 7.2e-41 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 615
AccB7I CCANNNNNTGG 2 cut(s) 139, 445
AciI CCGC 2 cut(s) 88, 586
AclWI GGATC 1 cut(s) 405
AcsI RAATTY 3 cut(s) 201, 364, 576
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 2 cut(s) 373, 617
AfiI CCNNNNNNNGG 4 cut(s) 139, 298, 381, 445
AgsI TTSAA 2 cut(s) 12, 641
AjnI CCWGG 2 cut(s) 91, 555
AluBI AGCT 2 cut(s) 82, 647
AluI AGCT 2 cut(s) 82, 647
Alw26I GTCTC 3 cut(s) 42, 190, 486
AlwI GGATC 1 cut(s) 405
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 3 cut(s) 89, 289, 558
ApeKI GCWGC 3 cut(s) 27, 278, 548
ApoI RAATTY 3 cut(s) 201, 364, 576
Asp700I GAANNNNTTC 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 4 cut(s) 130, 290, 301, 559
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 130, 301
BanI GGYRCC 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 14, 265, 535
BccI CCATC 4 cut(s) 133, 167, 250, 512
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 93, 557
BcoDI GTCTC 3 cut(s) 42, 190, 486
BfaI CTAG 3 cut(s) 294, 428, 528
BfoI RGCGCY 1 cut(s) 28
BglII AGATCT 1 cut(s) 530
BisI GCNGC 4 cut(s) 28, 89, 279, 549
BlsI GCNGC 4 cut(s) 29, 90, 280, 550
Bme1390I CCNGG 2 cut(s) 93, 557
Bme18I GGWCC 2 cut(s) 130, 301
BmgT120I GGNCC 4 cut(s) 130, 290, 301, 559
BmiI GGNNCC 2 cut(s) 314, 617
BmrFI CCNGG 2 cut(s) 93, 557
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 6 cut(s) 92, 186, 357, 444, 476, 555
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 298, 381, 445
BseBI CCWGG 2 cut(s) 93, 557
BseDI CCNNGG 6 cut(s) 92, 186, 357, 444, 476, 555
BseLI CCNNNNNNNGG 4 cut(s) 139, 298, 381, 445
BseMII CTCAG 1 cut(s) 497
BseXI GCAGC 3 cut(s) 14, 265, 535
BseYI CCCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 625
BshFI GGCC 3 cut(s) 91, 291, 560
BshNI GGYRCC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 2 cut(s) 168, 416
BslI CCNNNNNNNGG 4 cut(s) 139, 298, 381, 445
BsmAI GTCTC 3 cut(s) 42, 190, 486
BsmFI GGGAC 2 cut(s) 168, 416
BsmI GAATGC 2 cut(s) 331, 458
BsnI GGCC 3 cut(s) 91, 291, 560
Bso31I GGTCTC 1 cut(s) 486
Bsp143I GATC 3 cut(s) 379, 410, 530
Bsp19I CCATGG 3 cut(s) 186, 357, 444
BspACI CCGC 2 cut(s) 88, 586
BspANI GGCC 3 cut(s) 91, 291, 560
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 314, 617
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 615
BspTNI GGTCTC 1 cut(s) 486
BssECI CCNNGG 6 cut(s) 92, 186, 357, 444, 476, 555
BssMI GATC 3 cut(s) 379, 410, 530
BssT1I CCWWGG 3 cut(s) 186, 357, 444
Bst2UI CCWGG 2 cut(s) 93, 557
Bst4CI ACNGT 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 483, 648
BstDSI CCRYGG 3 cut(s) 186, 357, 444
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 3 cut(s) 382, 413, 533
BstMAI GTCTC 3 cut(s) 42, 190, 486
BstMBI GATC 3 cut(s) 379, 410, 530
BstMWI GCNNNNNNNGC 3 cut(s) 31, 88, 557
BstNI CCWGG 2 cut(s) 93, 557
BstNSI RCATGY 2 cut(s) 38, 540
BstSCI CCNGG 2 cut(s) 91, 555
BstV1I GCAGC 3 cut(s) 14, 265, 535
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 410, 530
BstXI CCANNNNNNTGG 2 cut(s) 337, 518
BstYI RGATCY 2 cut(s) 410, 530
BsuRI GGCC 3 cut(s) 91, 291, 560
BtgI CCRYGG 3 cut(s) 186, 357, 444
BtgZI GCGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 4 cut(s) 130, 290, 301, 559
CseI GACGC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 372, 616
CviAII CATG 5 cut(s) 35, 187, 358, 445, 537
CviQI GTAC 2 cut(s) 372, 616
DdeI CTNAG 2 cut(s) 483, 648
DpnI GATC 3 cut(s) 381, 412, 532
DpnII GATC 3 cut(s) 379, 410, 530
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eco130I CCWWGG 3 cut(s) 186, 357, 444
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 2 cut(s) 423, 592
Eco47I GGWCC 2 cut(s) 130, 301
Eco57I CTGAAG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 91, 555
EcoRV GATATC 2 cut(s) 423, 592
EcoT14I CCWWGG 3 cut(s) 186, 357, 444
EcoT22I ATGCAT 1 cut(s) 458
ErhI CCWWGG 3 cut(s) 186, 357, 444
FaeI CATG 5 cut(s) 38, 190, 361, 448, 540
FaiI YATR 8 cut(s) 36, 68, 188, 248, 288, 359, 446, 538
FaqI GGGAC 2 cut(s) 168, 416
FatI CATG 5 cut(s) 34, 186, 357, 444, 536
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 4 cut(s) 28, 89, 279, 549
Fsp4HI GCNGC 4 cut(s) 28, 89, 279, 549
FspBI CTAG 3 cut(s) 294, 428, 528
GlaI GCGC 1 cut(s) 26
GluI GCNGC 4 cut(s) 28, 89, 279, 549
GsaI CCCAGC 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 3 cut(s) 91, 291, 560
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 27
Hin1II CATG 5 cut(s) 38, 190, 361, 448, 540
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 645
HpaII CCGG 1 cut(s) 375
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 105, 384, 486
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 2 cut(s) 183, 239
HpyAV CCTTC 3 cut(s) 14, 152, 391
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 7 cut(s) 34, 456, 502, 536, 551, 566, 606
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 88, 557
HpyF3I CTNAG 2 cut(s) 483, 648
Hsp92II CATG 5 cut(s) 38, 190, 361, 448, 540
HspAI GCGC 1 cut(s) 25
KpnI GGTACC 1 cut(s) 619
Kzo9I GATC 3 cut(s) 379, 410, 530
LmnI GCTCC 2 cut(s) 79, 312
Lsp1109I GCAGC 3 cut(s) 14, 265, 535
MaeI CTAG 3 cut(s) 294, 428, 528
MaeIII GTNAC 2 cut(s) 260, 595
MalI GATC 3 cut(s) 381, 412, 532
MboI GATC 3 cut(s) 379, 410, 530
MboII GAAGA 2 cut(s) 155, 461
MflI RGATCY 2 cut(s) 410, 530
MluCI AATT 5 cut(s) 69, 107, 201, 364, 576
MnlI CCTC 5 cut(s) 121, 292, 486, 515, 642
Mph1103I ATGCAT 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 2 cut(s) 470, 621
MslI CAYNNNNRTG 2 cut(s) 191, 497
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 93, 557
Mva1269I GAATGC 2 cut(s) 331, 458
MvaI CCWGG 2 cut(s) 93, 557
MwoI GCNNNNNNNGC 3 cut(s) 31, 88, 557
NcoI CCATGG 3 cut(s) 186, 357, 444
NdeII GATC 3 cut(s) 379, 410, 530
NlaIII CATG 5 cut(s) 38, 190, 361, 448, 540
NlaIV GGNNCC 2 cut(s) 314, 617
NsiI ATGCAT 1 cut(s) 458
NspI RCATGY 2 cut(s) 38, 540
PctI GAATGC 2 cut(s) 331, 458
PdmI GAANNNNTTC 1 cut(s) 162
PflMI CCANNNNNTGG 2 cut(s) 139, 445
PkrI GCNGC 4 cut(s) 29, 90, 280, 550
Psp6I CCWGG 2 cut(s) 91, 555
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 2 cut(s) 91, 555
PspN4I GGNNCC 2 cut(s) 314, 617
PspPI GGNCC 4 cut(s) 130, 290, 301, 559
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 2 cut(s) 410, 530
RsaI GTAC 2 cut(s) 373, 617
RsaNI GTAC 2 cut(s) 372, 616
RseI CAYNNNNRTG 2 cut(s) 191, 497
SaqAI TTAA 2 cut(s) 470, 621
SatI GCNGC 4 cut(s) 28, 89, 279, 549
Sau3AI GATC 3 cut(s) 379, 410, 530
Sau96I GGNCC 4 cut(s) 130, 290, 301, 559
ScrFI CCNGG 2 cut(s) 93, 557
SetI ASST 6 cut(s) 84, 163, 303, 621, 634, 649
SinI GGWCC 2 cut(s) 130, 301
SmiMI CAYNNNNRTG 2 cut(s) 191, 497
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 5 cut(s) 69, 107, 201, 364, 576
SsiI CCGC 2 cut(s) 88, 586
SspMI CTAG 3 cut(s) 294, 428, 528
StyD4I CCNGG 2 cut(s) 91, 555
StyI CCWWGG 3 cut(s) 186, 357, 444
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 205
TaqII GACCGA 1 cut(s) 468
TasI AATT 5 cut(s) 69, 107, 201, 364, 576
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 470, 621
Tru9I TTAA 2 cut(s) 470, 621
TscAI CASTG 1 cut(s) 613
TseI GCWGC 3 cut(s) 27, 278, 548
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 613
Van91I CCANNNNNTGG 2 cut(s) 139, 445
VpaK11BI GGWCC 2 cut(s) 130, 301
XapI RAATTY 3 cut(s) 201, 364, 576
XceI RCATGY 2 cut(s) 38, 540
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 3 cut(s) 294, 428, 528
Zsp2I ATGCAT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.