Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001974

Physical Location & Seq

Genomic Coordinates Reverse (-)

31567152 .. 31570924

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1224600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAAATGAGACAAATTCGAGGAGAGATTGGTGTTGTGGACAAAGCTGACGGTTCTGCTGTGTTTGAGATGGGGAACACCAAAGTCATTGCTGCAGTGTATGGCCCTCGAGAGGTCCCAAATAGGAGCCAACAGATGAATGACAGGGCACTGGTGCGATGTGAGTACACCATGGCAAATTTTAGTACTGGAGATCGCATGAGGAAACCAAAGGGTGATAGACGATCCACAGAGATTTCTCTTGTTATTCGGCAAACCATGGAAGCATGCATTATGACTCATTTAATGCCTCGGACTCAGATTGATATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGTACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTTCAGATGCTGGAATTCCAATGCGTGACCTTGTTACTTCCTGTAGTGCGGGCTACCTTAATAGCACACCTCTACTTGATTTAAACTATGTAGAAGATAGTGCTGGAGGCGCTGATGTCACTTTAGGCATTATGCCAAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAATTACCGTTGGACATTTTTGAAAACGTAATGCAACTTGCAATCGAGGGCTGCAAGGCAGTTGCAACATATATTCGACAAGTATTACTAGAGAATACAAAGCAATTGGAGTATCGCCGAGGCACGTTTATAGCTGTTCTTATGAAGTTTGACGGCGGTTATATCATGGAGACGGTGTTTGATGAAGGAAGTAGGCTTAAAATTAAACACATTCAGTCGAGTATCCCCAACCAGAGAGCTGTTTTTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

268

Amino Acids

29.67

Weight (kDa)

7.6

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	2 - 132	6.2e-41	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	135 - 200	9.7e-12	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61620 AT3G61620
fragaria_vesca	FvH4_2g10710 FvH4_2g10710 FvH4_4g15330 FvH4_4g15330
malus_domestica	MD01G1224600.v1.1 MD13G1191700.v1.1 MD16G1191800.v1.1
prunus_persica	Prupe.1G011800_v2.0.a1
pyrus_communis	pycom16g16150
rosa_chinensis	RchiOBHm_Chr4g0416511 RchiOBHm_Chr6g0268411 RchiOBHm_Chr6g0271671 RchiOBHm_Chr7g0217091
rosa_laevigata	RLG00000007977 RLG00000013911
rosa_multiflora	Rmu_sc0002404.1_g000014 Rmu_sc0003132.1_g000002 Rmu_sc0003722.1_g000025
rosa_roxburghii	Rroxscaffold_3G00242590 Rroxscaffold_5G00360380 Rroxscaffold_7G00199820
rosa_rugosa	Rorug04G0142300 Rorug06G0041900 Rorug07G0165900 Rorug07G0166000 Rorug07G0166100 Rorug07G0166100
rosa_samantha	Rh4AG204800 Rh4BG202600 Rh4CG216000 Rh4DG202000 Rh6AG161200 Rh6BG165500 Rh6BG165600 Rh6CG159100 Rh6DG151400 Rh7AG305400 Rh7BG297000 Rh7CG324500 Rh7DG305600
rosa_wichuraiana	Rw4G017320 Rw6G013950 Rw7G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	425, 705
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	3 cut(s)	15, 178, 390
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	3 cut(s)	167, 187, 340
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	3 cut(s)	47, 683, 788
AluI	AGCT	3 cut(s)	47, 683, 788
Alw26I	GTCTC	2 cut(s)	4, 713
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	103, 372
ApeKI	GCWGC	3 cut(s)	92, 362, 600
ApoI	RAATTY	3 cut(s)	15, 178, 390
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	3 cut(s)	104, 115, 373
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	151
BbvI	GCAGC	3 cut(s)	79, 349, 587
BccI	CCATC	3 cut(s)	64, 326, 535
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	782
BcoDI	GTCTC	2 cut(s)	4, 713
BfaI	CTAG	2 cut(s)	342, 638
BfmI	CTRYAG	2 cut(s)	93, 418
BfoI	RGCGCY	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	782
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	3 cut(s)	93, 363, 601
BlsI	GCNGC	3 cut(s)	94, 364, 602
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	3 cut(s)	104, 115, 373
BmiI	GGNNCC	2 cut(s)	117, 128
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	373, 535
BpmI	CTGGAG	2 cut(s)	210, 501
BsaJI	CCNNGG	5 cut(s)	171, 258, 290, 369, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	156, 193
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	5 cut(s)	171, 258, 290, 369, 667
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	156, 193
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	79, 349, 587
BshFI	GGCC	2 cut(s)	105, 374
BsiHKCI	CYCGRG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	4, 713
BsmBI	CGTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	105, 374
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	193, 224, 344
Bsp19I	CCATGG	2 cut(s)	171, 258
BspACI	CCGC	2 cut(s)	425, 705
BspANI	GGCC	2 cut(s)	105, 374
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	117, 128
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	156, 193
BssECI	CCNNGG	5 cut(s)	171, 258, 290, 369, 667
BssMI	GATC	3 cut(s)	193, 224, 344
BssT1I	CCWWGG	2 cut(s)	171, 258
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	53, 558, 724
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	268, 427
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	2 cut(s)	171, 258
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	3 cut(s)	196, 227, 347
BstMAI	GTCTC	2 cut(s)	4, 713
BstMBI	GATC	3 cut(s)	193, 224, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 485
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	270, 354
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	2 cut(s)	93, 418
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	79, 349, 587
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	105, 374
BtgI	CCRYGG	2 cut(s)	171, 258
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 149
Cac8I	GCNNGC	2 cut(s)	268, 427
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	104, 115, 373
Csp6I	GTAC	3 cut(s)	166, 186, 339
CviAII	CATG	6 cut(s)	172, 199, 259, 267, 351, 715
CviJI	RGCY	9 cut(s)	47, 105, 129, 374, 429, 600, 683, 745, 788
CviKI_1	RGCY	9 cut(s)	47, 105, 129, 374, 429, 600, 683, 745, 788
CviQI	GTAC	3 cut(s)	166, 186, 339
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	3 cut(s)	195, 226, 346
DpnII	GATC	3 cut(s)	193, 224, 344
DraI	TTTAAA	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	171, 258
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	171, 258
EcoT22I	ATGCAT	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	171, 258
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	6 cut(s)	175, 202, 262, 270, 354, 718
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	6 cut(s)	171, 198, 258, 266, 350, 714
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	93, 363, 601
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	3 cut(s)	93, 363, 601
FspBI	CTAG	2 cut(s)	342, 638
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	3 cut(s)	93, 363, 601
GsuI	CTGGAG	2 cut(s)	210, 501
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	105, 374
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	6 cut(s)	175, 202, 262, 270, 354, 718
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	277, 295, 529, 798
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	40, 168
Hpy188I	TCNGA	5 cut(s)	294, 300, 382, 540, 803
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	40, 168
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	3 cut(s)	53, 558, 724
HpyCH4IV	ACGT	2 cut(s)	576, 674
HpyCH4V	TGCA	9 cut(s)	95, 270, 316, 350, 365, 583, 590, 603, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 485
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	576, 674
Hsp92II	CATG	6 cut(s)	175, 202, 262, 270, 354, 718
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	193, 224, 344
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	9 cut(s)	130, 137, 174, 356, 372, 383, 430, 465, 794
Lsp1109I	GCAGC	3 cut(s)	79, 349, 587
LweI	GCATC	2 cut(s)	373, 535
MaeI	CTAG	2 cut(s)	342, 638
MaeII	ACGT	2 cut(s)	576, 674
MaeIII	GTNAC	4 cut(s)	401, 409, 493, 526
MalI	GATC	3 cut(s)	195, 226, 346
MboI	GATC	3 cut(s)	193, 224, 344
MboII	GAAGA	3 cut(s)	482, 524, 527
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	6 cut(s)	15, 178, 390, 551, 653, 750
MlyI	GAGTC	3 cut(s)	271, 289, 523
MmeI	TCCRAC	2 cut(s)	498, 540
Mph1103I	ATGCAT	1 cut(s)	272
MseI	TTAA	5 cut(s)	284, 435, 458, 747, 753
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	371, 485
NcoI	CCATGG	2 cut(s)	171, 258
NdeII	GATC	3 cut(s)	193, 224, 344
NlaIII	CATG	6 cut(s)	175, 202, 262, 270, 354, 718
NlaIV	GGNNCC	2 cut(s)	117, 128
NmeAIII	GCCGAG	1 cut(s)	692
NmuCI	GTSAC	3 cut(s)	401, 493, 526
NsiI	ATGCAT	1 cut(s)	272
NspI	RCATGY	2 cut(s)	270, 354
PaeI	GCATGC	1 cut(s)	270
PaeR7I	CTCGAG	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	798
PkrI	GCNGC	3 cut(s)	94, 364, 602
PleI	GAGTC	3 cut(s)	271, 289, 523
PpsI	GAGTC	3 cut(s)	271, 289, 523
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	117, 128
PspPI	GGNCC	3 cut(s)	104, 115, 373
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	3 cut(s)	167, 187, 340
RsaNI	GTAC	3 cut(s)	166, 186, 339
SaqAI	TTAA	5 cut(s)	284, 435, 458, 747, 753
SatI	GCNGC	3 cut(s)	93, 363, 601
Sau3AI	GATC	3 cut(s)	193, 224, 344
Sau96I	GGNCC	3 cut(s)	104, 115, 373
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	3 cut(s)	271, 289, 523
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	373, 535
SfcI	CTRYAG	2 cut(s)	93, 418
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	6 cut(s)	15, 178, 390, 551, 653, 750
SsiI	CCGC	2 cut(s)	425, 705
SspMI	CTAG	2 cut(s)	342, 638
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	171, 258
TaaI	ACNGT	3 cut(s)	53, 558, 724
TaiI	ACGT	2 cut(s)	579, 677
TaqI	TCGA	5 cut(s)	19, 109, 594, 625, 767
TasI	AATT	6 cut(s)	15, 178, 390, 551, 653, 750
TatI	WGTACW	2 cut(s)	165, 185
TfiI	GAWTC	1 cut(s)	798
Tru1I	TTAA	5 cut(s)	284, 435, 458, 747, 753
Tru9I	TTAA	5 cut(s)	284, 435, 458, 747, 753
TscAI	CASTG	2 cut(s)	102, 156
TseFI	GTSAC	3 cut(s)	401, 493, 526
TseI	GCWGC	3 cut(s)	92, 362, 600
Tsp45I	GTSAC	3 cut(s)	401, 493, 526
TspDTI	ATGAA	3 cut(s)	152, 707, 747
TspRI	CASTG	2 cut(s)	102, 156
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	3 cut(s)	15, 178, 390
XceI	RCATGY	2 cut(s)	270, 354
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	2 cut(s)	342, 638
ZrmI	AGTACT	1 cut(s)	187
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.