Rorug07G0165900

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001974
Physical Location & Seq
Forward (+)
13294375 .. 13295773
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0165900.1

Sequence Viewer

Length: 537 bp
ATGAAGTACGTGAGGCCCTTGAACATGTTCCTGGATTTGCACAAGGCCAAAGCTCTCCAACGCGGCGGCCGCTTGCTCGGTCTGGACGTCGGCGACAAGTACGTCGGCCTCGCCGTTTCCGACCTCGATAACAAAATCGCCTCCCCTTTAAGTGTTCTGCTTAGGAAGAAATCAACCCTGGAATTGATGGCCTCTGATTTCCAGAGCTTGGTCTCCAAGCTTTCTCTGGTGGGCTTTGTAGTTGGCTACCCTTTCGACAGACAGCGAGGCACTCCTGAAGCTGTCCAAGTGAAGCTTCTGATTGAGGATCTCTGTAAGACGAGAAAACTTGAAGGCATGAAGTATACTTATTGGGACGAGTGCTTTACTTCAAAGAATGTCGAATTACTGCTAAAGCCTTTGAGTTTCCATCCGGTTCAGTCAAAGACAATTGTTGACAAGTTTGCTGCTGTTGGTATACTCCAGGGGTACCTTGATTATGTGAACAGGAAGCTGACGTTGGATCAAAAGCCATCACCTTTGCTGAACTCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

178

Amino Acids

20.01

Weight (kDa)

9.45

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 24 - 159 8.7e-26 Holliday junction resolvase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 90
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 2 cut(s) 344, 457
AccII CGCG 1 cut(s) 63
AciI CCGC 3 cut(s) 63, 66, 70
AclWI GGATC 2 cut(s) 315, 510
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 8, 101, 470
AfiI CCNNNNNNNGG 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 22, 332, 372
AjnI CCWGG 3 cut(s) 30, 177, 462
AjuI GAANNNNNNNTTGG 4 cut(s) 279, 311, 482, 514
AluBI AGCT 6 cut(s) 53, 207, 220, 281, 295, 493
AluI AGCT 6 cut(s) 53, 207, 220, 281, 295, 493
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 2 cut(s) 315, 510
AoxI GGCC 5 cut(s) 14, 45, 67, 106, 189
ApeKI GCWGC 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 507
BanI GGYRCC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 433
BccI CCATC 3 cut(s) 181, 417, 520
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 3 cut(s) 32, 179, 464
BcoDI GTCTC 1 cut(s) 217
BisI GCNGC 4 cut(s) 64, 67, 70, 447
BlsI GCNGC 4 cut(s) 65, 68, 71, 448
Bme1390I CCNGG 3 cut(s) 32, 179, 464
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 3 cut(s) 32, 179, 464
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 177, 463
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseBI CCWGG 3 cut(s) 32, 179, 464
BseDI CCNNGG 2 cut(s) 177, 463
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 520
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 16, 47, 69, 108, 191
BshNI GGYRCC 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 5 cut(s) 16, 47, 69, 108, 191
Bso31I GGTCTC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 307, 502
BspACI CCGC 3 cut(s) 63, 66, 70
BspANI GGCC 5 cut(s) 16, 47, 69, 108, 191
BspFNI CGCG 1 cut(s) 63
BspHI TCATGA 1 cut(s) 533
BspLI GGNNCC 1 cut(s) 470
BspPI GGATC 2 cut(s) 315, 510
BspT107I GGYRCC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 177, 463
BssMI GATC 2 cut(s) 307, 502
BssNAI GTATAC 2 cut(s) 345, 458
BssNI GRCGYC 1 cut(s) 87
Bst1107I GTATAC 2 cut(s) 345, 458
Bst2UI CCWGG 3 cut(s) 32, 179, 464
BstACI GRCGYC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 310, 505
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 307, 502
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 3 cut(s) 32, 179, 464
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 30, 177, 462
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BstZ17I GTATAC 2 cut(s) 345, 458
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 5 cut(s) 16, 47, 69, 108, 191
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 533
CciNI GCGGCCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 3 cut(s) 7, 100, 469
CviAII CATG 3 cut(s) 25, 337, 534
CviQI GTAC 3 cut(s) 7, 100, 469
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 309, 504
DpnII GATC 2 cut(s) 307, 502
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 30, 177, 462
FaeI CATG 3 cut(s) 28, 340, 537
FaiI YATR 6 cut(s) 26, 338, 345, 458, 480, 535
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 368
FatI CATG 3 cut(s) 24, 336, 533
FblI GTMKAC 2 cut(s) 344, 457
Fnu4HI GCNGC 4 cut(s) 64, 67, 70, 447
FokI GGATG 1 cut(s) 396
Fsp4HI GCNGC 4 cut(s) 64, 67, 70, 447
GluI GCNGC 4 cut(s) 64, 67, 70, 447
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 5 cut(s) 16, 47, 69, 108, 191
HapII CCGG 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 3 cut(s) 28, 340, 537
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 218, 293
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 507
Hpy166II GTNNAC 4 cut(s) 345, 436, 458, 484
Hpy188I TCNGA 3 cut(s) 121, 196, 300
Hpy188III TCNNGA 4 cut(s) 83, 202, 275, 534
Hpy8I GTNNAC 4 cut(s) 345, 436, 458, 484
Hpy99I CGWCG 2 cut(s) 92, 107
HpyAV CCTTC 1 cut(s) 326
HpyCH4IV ACGT 4 cut(s) 9, 87, 102, 497
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 4 cut(s) 9, 87, 102, 497
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 28, 340, 537
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 307, 502
Lsp1109I GCAGC 1 cut(s) 433
MaeII ACGT 4 cut(s) 9, 87, 102, 497
MalI GATC 2 cut(s) 309, 504
MboI GATC 2 cut(s) 307, 502
MboII GAAGA 1 cut(s) 178
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 307
MluCI AATT 3 cut(s) 182, 383, 429
MmeI TCCRAC 3 cut(s) 82, 144, 480
MnlI CCTC 7 cut(s) 6, 119, 134, 151, 202, 260, 298
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 149
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 3 cut(s) 32, 179, 464
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 3 cut(s) 32, 179, 464
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 2 cut(s) 307, 502
NlaIII CATG 3 cut(s) 28, 340, 537
NlaIV GGNNCC 1 cut(s) 470
NotI GCGGCCGC 1 cut(s) 67
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 533
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 111, 117
PdmI GAANNNNTTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 208
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 4 cut(s) 65, 68, 71, 448
Ppu21I YACGTR 1 cut(s) 10
PscI ACATGT 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 30, 177, 462
PspGI CCWGG 3 cut(s) 30, 177, 462
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 3 cut(s) 8, 101, 470
RsaNI GTAC 3 cut(s) 7, 100, 469
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 4 cut(s) 64, 67, 70, 447
Sau3AI GATC 2 cut(s) 307, 502
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 3 cut(s) 32, 179, 464
Sse9I AATT 3 cut(s) 182, 383, 429
SsiI CCGC 3 cut(s) 63, 66, 70
StyD4I CCNGG 3 cut(s) 30, 177, 462
TaiI ACGT 4 cut(s) 12, 90, 105, 500
TaqI TCGA 3 cut(s) 126, 255, 381
TaqII GACCGA 1 cut(s) 68
TasI AATT 3 cut(s) 182, 383, 429
TauI GCSGC 3 cut(s) 66, 69, 72
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 17, 353
Van91I CCANNNNNTGG 1 cut(s) 208
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 344, 457
XmnI GAANNNNTTC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.