FvH4_2g10710

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001974
Physical Location & Seq
Reverse (-)
9446557 .. 9450882
4326 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10710.t2

Sequence Viewer

Length: 726 bp
ATGGAGTTCGTCAGCCCTGAAGGTCTCTGTTTAGATGGTCGCCGTCCCATGGAAATGAGGCAAATTCGTGCAGAGATTGGTGTTGTATCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTATTGCTGCTGTGTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCATTGGTGCGATGTGAATACACCATGGCAAATTTTAGCACTGGAGATCGAATGAGAAAACCAAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACTATGGAAGAATGCATCTTGACAAACTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGATGCTGGAATTCCAATGCGGGATCTTGTTACTTCATGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTTTTGAAACTGTAATGCAACTTGCAATTGAAGGCTGCAAGGCAGTTGCAGATTATATTAGAGAAATATTATTGGAGAATACAAAGCAATTGGAGTATCGTCGAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

242

Amino Acids

26.53

Weight (kDa)

5.12

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 18 - 148 3.9e-42 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 1 cut(s) 448
AclWI GGATC 2 cut(s) 267, 459
AcsI RAATTY 3 cut(s) 63, 226, 438
AcuI CTGAAG 2 cut(s) 39, 569
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 49, 160, 307
AgsI TTSAA 2 cut(s) 620, 644
AjnI CCWGG 1 cut(s) 417
Alw26I GTCTC 2 cut(s) 29, 348
AlwI GGATC 2 cut(s) 267, 459
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 151, 420
ApeKI GCWGC 3 cut(s) 140, 410, 648
ApoI RAATTY 3 cut(s) 63, 226, 438
Asp718I GGTACC 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 152, 163, 421
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 477
BbvI GCAGC 3 cut(s) 127, 397, 635
BccI CCATC 4 cut(s) 29, 112, 374, 583
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 419
BciVI GTATCC 2 cut(s) 97, 604
BcoDI GTCTC 2 cut(s) 29, 348
BfaI CTAG 3 cut(s) 156, 290, 390
BfuI GTATCC 2 cut(s) 97, 604
BglII AGATCT 1 cut(s) 392
BisI GCNGC 3 cut(s) 141, 411, 649
BlsI GCNGC 3 cut(s) 142, 412, 650
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 152, 163, 421
BmiI GGNNCC 2 cut(s) 176, 479
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 327, 421, 583
BpmI CTGGAG 2 cut(s) 258, 549
BsaI GGTCTC 2 cut(s) 29, 348
BsaJI CCNNGG 4 cut(s) 48, 219, 338, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 160, 307
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 4 cut(s) 48, 219, 338, 417
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 49, 160, 307
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 127, 397, 635
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 153, 422
BshNI GGYRCC 1 cut(s) 477
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 49, 160, 307
BsmAI GTCTC 2 cut(s) 29, 348
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 193, 320
BsnI GGCC 2 cut(s) 153, 422
Bso31I GGTCTC 2 cut(s) 29, 348
Bsp143I GATC 4 cut(s) 241, 272, 392, 451
Bsp19I CCATGG 2 cut(s) 48, 219
BspACI CCGC 1 cut(s) 448
BspANI GGCC 2 cut(s) 153, 422
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 176, 479
BspPI GGATC 2 cut(s) 267, 459
BspT107I GGYRCC 1 cut(s) 477
BspTNI GGTCTC 2 cut(s) 29, 348
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 4 cut(s) 48, 219, 338, 417
BssMI GATC 4 cut(s) 241, 272, 392, 451
BssT1I CCWWGG 2 cut(s) 48, 219
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 101, 625
Bst6I CTCTTC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 345, 597
BstDSI CCRYGG 2 cut(s) 48, 219
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 4 cut(s) 244, 275, 395, 454
BstMAI GTCTC 2 cut(s) 29, 348
BstMBI GATC 4 cut(s) 241, 272, 392, 451
BstMWI GCNNNNNNNGC 2 cut(s) 419, 533
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 127, 397, 635
BstX2I RGATCY 3 cut(s) 272, 392, 451
BstXI CCANNNNNNTGG 2 cut(s) 199, 380
BstYI RGATCY 3 cut(s) 272, 392, 451
BsuI GTATCC 2 cut(s) 97, 604
BsuRI GGCC 2 cut(s) 153, 422
BtgI CCRYGG 2 cut(s) 48, 219
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 598
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 234, 475
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 152, 163, 421
Csp6I GTAC 1 cut(s) 478
CviAII CATG 4 cut(s) 49, 220, 399, 465
CviJI RGCY 6 cut(s) 15, 95, 153, 177, 422, 648
CviKI_1 RGCY 6 cut(s) 15, 95, 153, 177, 422, 648
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 345, 597
DpnI GATC 4 cut(s) 243, 274, 394, 453
DpnII GATC 4 cut(s) 241, 272, 392, 451
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco130I CCWWGG 2 cut(s) 48, 219
Eco31I GGTCTC 2 cut(s) 29, 348
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 39, 569
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 2 cut(s) 48, 219
EcoT22I ATGCAT 2 cut(s) 199, 320
ErhI CCWWGG 2 cut(s) 48, 219
FaeI CATG 4 cut(s) 52, 223, 402, 468
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 30
FatI CATG 4 cut(s) 48, 219, 398, 464
FauI CCCGC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 141, 411, 649
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 3 cut(s) 141, 411, 649
FspBI CTAG 3 cut(s) 156, 290, 390
GluI GCNGC 3 cut(s) 141, 411, 649
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 2 cut(s) 258, 549
HaeIII GGCC 2 cut(s) 153, 422
Hin1II CATG 4 cut(s) 52, 223, 402, 468
HinfI GANTC 1 cut(s) 577
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 348, 588
Hpy188III TCNNGA 1 cut(s) 322
Hpy99I CGWCG 2 cut(s) 101, 717
HpyAV CCTTC 2 cut(s) 14, 638
HpyCH4III ACNGT 2 cut(s) 101, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 533
HpyF3I CTNAG 2 cut(s) 345, 597
Hsp92II CATG 4 cut(s) 52, 223, 402, 468
KpnI GGTACC 1 cut(s) 481
Kzo9I GATC 4 cut(s) 241, 272, 392, 451
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 7 cut(s) 30, 222, 404, 420, 431, 459, 513
Lsp1109I GCAGC 3 cut(s) 127, 397, 635
LweI GCATC 3 cut(s) 327, 421, 583
MaeI CTAG 3 cut(s) 156, 290, 390
MaeIII GTNAC 4 cut(s) 122, 457, 541, 574
MalI GATC 4 cut(s) 243, 274, 394, 453
MboI GATC 4 cut(s) 241, 272, 392, 451
MboII GAAGA 4 cut(s) 323, 530, 572, 575
MfeI CAATTG 2 cut(s) 639, 701
MflI RGATCY 3 cut(s) 272, 392, 451
MluCI AATT 6 cut(s) 63, 226, 438, 552, 639, 701
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 546, 588
MnlI CCTC 7 cut(s) 51, 154, 348, 377, 504, 524, 710
Mph1103I ATGCAT 2 cut(s) 199, 320
MseI TTAA 3 cut(s) 332, 483, 506
MslI CAYNNNNRTG 2 cut(s) 53, 359
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 2 cut(s) 639, 701
Mva1269I GAATGC 2 cut(s) 193, 320
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 419, 533
NcoI CCATGG 2 cut(s) 48, 219
NdeII GATC 4 cut(s) 241, 272, 392, 451
NlaIII CATG 4 cut(s) 52, 223, 402, 468
NlaIV GGNNCC 2 cut(s) 176, 479
NmuCI GTSAC 2 cut(s) 541, 574
NsiI ATGCAT 2 cut(s) 199, 320
NspI RCATGY 1 cut(s) 402
PctI GAATGC 2 cut(s) 193, 320
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 3 cut(s) 142, 412, 650
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 176, 479
PspPI GGNCC 3 cut(s) 152, 163, 421
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 272, 392, 451
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 2 cut(s) 53, 359
SaqAI TTAA 3 cut(s) 332, 483, 506
SatI GCNGC 3 cut(s) 141, 411, 649
Sau3AI GATC 4 cut(s) 241, 272, 392, 451
Sau96I GGNCC 3 cut(s) 152, 163, 421
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 419
SetI ASST 5 cut(s) 25, 165, 483, 496, 535
SfaNI GCATC 3 cut(s) 327, 421, 583
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 53, 359
Sse9I AATT 6 cut(s) 63, 226, 438, 552, 639, 701
SsiI CCGC 1 cut(s) 448
SspI AATATT 1 cut(s) 681
SspMI CTAG 3 cut(s) 156, 290, 390
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 48, 219
TaaI ACNGT 2 cut(s) 101, 625
TaqI TCGA 2 cut(s) 244, 715
TaqII GACCGA 1 cut(s) 330
TasI AATT 6 cut(s) 63, 226, 438, 552, 639, 701
Tru1I TTAA 3 cut(s) 332, 483, 506
Tru9I TTAA 3 cut(s) 332, 483, 506
TscAI CASTG 2 cut(s) 241, 475
TseFI GTSAC 2 cut(s) 541, 574
TseI GCWGC 3 cut(s) 140, 410, 648
Tsp45I GTSAC 2 cut(s) 541, 574
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 2 cut(s) 241, 475
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 3 cut(s) 63, 226, 438
XceI RCATGY 1 cut(s) 402
XspI CTAG 3 cut(s) 156, 290, 390
Zsp2I ATGCAT 2 cut(s) 199, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.