Rmu_sc0003132.1_g000002

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003132.1
OG0001974
Physical Location & Seq
Reverse (-)
3091 .. 5307
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003132.1_g000002.1.cds

Sequence Viewer

Length: 738 bp
atgttccaacagatggagtttgtgagccctgaaggtcttcgcatagatggtcgccgccccatggaaatgaggcaaattcgagcagagattggtgttgtggccaaagccgacggttctgctatgttcgagatgggtaacactaaagttattgctgctgtgtatggccctaaagaggtccaaaataggagccaacaactgaatgccaatgcattggtgcgctgtgaatacacaatggcaaattttagtaccggagatcggatgagaaaaccaaagggtgataggagatccacagagatatctctagttattcgccaagccatggaagaatgcatcttgacaaacttaatgcctcggtctcagatagatatttttgtgcaagttcttcaagcagatggaggaactagatctgcatgtatcaatgctgcaaccctggctctagcagacgctggaattccgatgcgagatcttgttacttcctgcagtgctgggtacctcaatagcacccctctgcttgatttaaactatgtagaagatagtgctggaggcactgatgtgactttaggaattatgccgaagttggacaaagtgactcttcttcagatggatgctaagttatctttggatacttttgaaaatgtaatgcaacttgcagtcgaaggctgcaaggcagttgcagattacattcgagaaatattgcaagagaatacaaagcaattggagtatcgtcgaggaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

245

Amino Acids

27.07

Weight (kDa)

5.26

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 489
AccB7I CCANNNNNTGG 2 cut(s) 13, 319
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 3 cut(s) 75, 238, 450
AcuI CTGAAG 2 cut(s) 51, 581
AfaI GTAC 2 cut(s) 247, 491
AfiI CCNNNNNNNGG 5 cut(s) 13, 61, 172, 255, 319
AgsI TTSAA 2 cut(s) 386, 632
AjnI CCWGG 1 cut(s) 429
AleI CACNNNNGTG 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 2 cut(s) 99, 163
ApeKI GCWGC 3 cut(s) 152, 422, 660
ApoI RAATTY 3 cut(s) 75, 238, 450
Asp700I GAANNNNTTC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 489
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 164, 175
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 1 cut(s) 175
BalI TGGCCA 1 cut(s) 101
BanI GGYRCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 139, 409, 647
BccI CCATC 5 cut(s) 7, 41, 124, 386, 595
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 3 cut(s) 302, 402, 437
BfmI CTRYAG 1 cut(s) 478
BfuI GTATCC 1 cut(s) 616
BglII AGATCT 2 cut(s) 404, 463
BisI GCNGC 4 cut(s) 55, 153, 423, 661
BlsI GCNGC 4 cut(s) 56, 154, 424, 662
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 164, 175
BmiI GGNNCC 2 cut(s) 188, 491
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 3 cut(s) 339, 447, 595
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 60, 318, 350, 429
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 61, 172, 255, 319
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 4 cut(s) 60, 318, 350, 429
BseGI GGATG 2 cut(s) 264, 610
BseLI CCNNNNNNNGG 5 cut(s) 13, 61, 172, 255, 319
BseMII CTCAG 1 cut(s) 371
BseXI GCAGC 3 cut(s) 139, 409, 647
BseYI CCCAGC 1 cut(s) 485
BshFI GGCC 2 cut(s) 101, 165
BshNI GGYRCC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 5 cut(s) 13, 61, 172, 255, 319
BsmAI GTCTC 1 cut(s) 360
BsmI GAATGC 2 cut(s) 205, 332
BsnI GGCC 2 cut(s) 101, 165
Bso31I GGTCTC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 253, 284, 404, 463
Bsp19I CCATGG 2 cut(s) 60, 318
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 101, 165
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 188, 491
BspMAI CTGCAG 1 cut(s) 482
BspPI GGATC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 60, 318, 350, 429
BssMI GATC 4 cut(s) 253, 284, 404, 463
BssT1I CCWWGG 2 cut(s) 60, 318
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 357, 609
BstDSI CCRYGG 2 cut(s) 60, 318
BstF5I GGATG 2 cut(s) 264, 610
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 4 cut(s) 256, 287, 407, 466
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 4 cut(s) 253, 284, 404, 463
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 139, 409, 647
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 3 cut(s) 284, 404, 463
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 3 cut(s) 284, 404, 463
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 2 cut(s) 101, 165
BtgI CCRYGG 2 cut(s) 60, 318
BtsCI GGATG 2 cut(s) 264, 610
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 487, 546
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 164, 175
CseI GACGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 246, 490
CviAII CATG 3 cut(s) 61, 319, 411
CviJI RGCY 8 cut(s) 27, 101, 107, 165, 189, 317, 434, 660
CviKI_1 RGCY 8 cut(s) 27, 101, 107, 165, 189, 317, 434, 660
CviQI GTAC 2 cut(s) 246, 490
DdeI CTNAG 2 cut(s) 357, 609
DpnI GATC 4 cut(s) 255, 286, 406, 465
DpnII GATC 4 cut(s) 253, 284, 404, 463
DraI TTTAAA 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 60, 318
Eco24I GRGCYC 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 360
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 51, 581
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 60, 318
EcoT22I ATGCAT 2 cut(s) 211, 332
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 2 cut(s) 60, 318
FaeI CATG 3 cut(s) 64, 322, 414
FaiI YATR 9 cut(s) 44, 62, 122, 162, 320, 412, 525, 569, 736
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 3 cut(s) 60, 318, 410
Fnu4HI GCNGC 4 cut(s) 55, 153, 423, 661
FokI GGATG 2 cut(s) 271, 617
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 55, 153, 423, 661
FspBI CTAG 3 cut(s) 302, 402, 437
GlaI GCGC 1 cut(s) 218
GluI GCNGC 4 cut(s) 55, 153, 423, 661
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 101, 165
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 64, 322, 414
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 1 cut(s) 589
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 258, 360, 456, 600
Hpy188III TCNNGA 3 cut(s) 127, 334, 686
Hpy99I CGWCG 2 cut(s) 113, 729
HpyAV CCTTC 2 cut(s) 26, 650
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 2 cut(s) 357, 609
Hsp92II CATG 3 cut(s) 64, 322, 414
HspAI GCGC 1 cut(s) 217
KpnI GGTACC 1 cut(s) 493
Kzo9I GATC 4 cut(s) 253, 284, 404, 463
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 8 cut(s) 42, 262, 416, 432, 443, 471, 490, 525
Lsp1109I GCAGC 3 cut(s) 139, 409, 647
LweI GCATC 3 cut(s) 339, 447, 595
MaeI CTAG 3 cut(s) 302, 402, 437
MaeIII GTNAC 4 cut(s) 134, 469, 553, 586
MalI GATC 4 cut(s) 255, 286, 406, 465
MboI GATC 4 cut(s) 253, 284, 404, 463
MboII GAAGA 6 cut(s) 29, 335, 374, 542, 584, 587
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 3 cut(s) 284, 404, 463
MhlI GDGCHC 1 cut(s) 29
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 5 cut(s) 75, 238, 450, 564, 713
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 2 cut(s) 31, 558
MnlI CCTC 8 cut(s) 63, 166, 360, 389, 503, 516, 536, 722
Mox20I TGGCCA 1 cut(s) 101
Mph1103I ATGCAT 2 cut(s) 211, 332
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 101
MseI TTAA 2 cut(s) 344, 518
MslI CAYNNNNRTG 2 cut(s) 65, 551
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 713
Mva1269I GAATGC 2 cut(s) 205, 332
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 431
NcoI CCATGG 2 cut(s) 60, 318
NdeII GATC 4 cut(s) 253, 284, 404, 463
NlaIII CATG 3 cut(s) 64, 322, 414
NlaIV GGNNCC 2 cut(s) 188, 491
NmuCI GTSAC 2 cut(s) 553, 586
NsiI ATGCAT 2 cut(s) 211, 332
NspI RCATGY 1 cut(s) 414
OliI CACNNNNGTG 1 cut(s) 551
PctI GAATGC 2 cut(s) 205, 332
PdmI GAANNNNTTC 1 cut(s) 36
PflMI CCANNNNNTGG 2 cut(s) 13, 319
PkrI GCNGC 4 cut(s) 56, 154, 424, 662
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 188, 491
PspPI GGNCC 2 cut(s) 164, 175
PstI CTGCAG 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 3 cut(s) 284, 404, 463
RsaI GTAC 2 cut(s) 247, 491
RsaNI GTAC 2 cut(s) 246, 490
RseI CAYNNNNRTG 2 cut(s) 65, 551
SaqAI TTAA 2 cut(s) 344, 518
SatI GCNGC 4 cut(s) 55, 153, 423, 661
Sau3AI GATC 4 cut(s) 253, 284, 404, 463
Sau96I GGNCC 2 cut(s) 164, 175
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 29
SetI ASST 3 cut(s) 37, 177, 495
SfaNI GCATC 3 cut(s) 339, 447, 595
SfcI CTRYAG 1 cut(s) 478
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 65, 551
Sse9I AATT 5 cut(s) 75, 238, 450, 564, 713
SsiI CCGC 1 cut(s) 55
SspI AATATT 1 cut(s) 693
SspMI CTAG 3 cut(s) 302, 402, 437
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 2 cut(s) 60, 318
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 5 cut(s) 79, 126, 654, 685, 727
TaqII GACCGA 1 cut(s) 342
TasI AATT 5 cut(s) 75, 238, 450, 564, 713
TauI GCSGC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 344, 518
Tru9I TTAA 2 cut(s) 344, 518
TscAI CASTG 2 cut(s) 487, 553
TseFI GTSAC 2 cut(s) 553, 586
TseI GCWGC 3 cut(s) 152, 422, 660
Tsp45I GTSAC 2 cut(s) 553, 586
TspRI CASTG 2 cut(s) 487, 553
Van91I CCANNNNNTGG 2 cut(s) 13, 319
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 3 cut(s) 75, 238, 450
XceI RCATGY 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 3 cut(s) 302, 402, 437
Zsp2I ATGCAT 2 cut(s) 211, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.