Rh4DG202000

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001974
Physical Location & Seq
Reverse (-)
39272574 .. 39277171
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG202000.1

Sequence Viewer

Length: 579 bp
ATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGCCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCTGACGGTTCTGCTATGTTTGAGATGGGCAACACCAAAGTTGTTGCTGCCGTATATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCATTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAATTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATCTTGTTACTTCCTGCAGTGCTGGGTACCTTAACAGCACACCTCTACTTGGTAATATTTACTTAAATTTCTATTTTATTGAGAATATATTTTGTTGGGGTCCCTGTAATGCCTTCATACTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

192

Amino Acids

21.27

Weight (kDa)

7.54

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 18 - 148 2.3e-41 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 1 cut(s) 448
AclWI GGATC 2 cut(s) 267, 459
AcsI RAATTY 5 cut(s) 63, 226, 328, 438, 517
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 235, 479
AfiI CCNNNNNNNGG 5 cut(s) 49, 160, 243, 307, 500
AhlI ACTAGT 1 cut(s) 571
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 267, 459
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 151, 420
ApeKI GCWGC 2 cut(s) 140, 410
ApoI RAATTY 5 cut(s) 63, 226, 328, 438, 517
Asp700I GAANNNNTTC 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 477
AspS9I GGNCC 4 cut(s) 152, 163, 421, 551
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 2 cut(s) 163, 551
BanI GGYRCC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 127, 397
BccI CCATC 3 cut(s) 29, 112, 374
BceAI ACGGC 2 cut(s) 27, 128
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 348
BcuI ACTAGT 1 cut(s) 571
BfaI CTAG 4 cut(s) 156, 290, 390, 572
BfmI CTRYAG 1 cut(s) 466
BglII AGATCT 1 cut(s) 392
BisI GCNGC 2 cut(s) 141, 411
BlsI GCNGC 2 cut(s) 142, 412
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 163, 551
BmgT120I GGNCC 4 cut(s) 152, 163, 421, 551
BmiI GGNNCC 4 cut(s) 176, 479, 552, 553
BmrFI CCNGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 5 cut(s) 48, 219, 306, 338, 417
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 160, 243, 307, 500
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 5 cut(s) 48, 219, 306, 338, 417
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 5 cut(s) 49, 160, 243, 307, 500
BseMII CTCAG 1 cut(s) 359
BseXI GCAGC 2 cut(s) 127, 397
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 2 cut(s) 153, 422
BshNI GGYRCC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 30, 537
BslI CCNNNNNNNGG 5 cut(s) 49, 160, 243, 307, 500
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 30, 537
BsmI GAATGC 2 cut(s) 193, 320
BsnI GGCC 2 cut(s) 153, 422
Bso31I GGTCTC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 241, 272, 392, 451
Bsp19I CCATGG 3 cut(s) 48, 219, 306
BspACI CCGC 1 cut(s) 448
BspANI GGCC 2 cut(s) 153, 422
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 4 cut(s) 176, 479, 552, 553
BspMAI CTGCAG 1 cut(s) 470
BspPI GGATC 2 cut(s) 267, 459
BspT107I GGYRCC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 348
BssECI CCNNGG 5 cut(s) 48, 219, 306, 338, 417
BssMI GATC 4 cut(s) 241, 272, 392, 451
BssT1I CCWWGG 3 cut(s) 48, 219, 306
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 3 cut(s) 48, 219, 306
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 4 cut(s) 244, 275, 395, 454
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 4 cut(s) 241, 272, 392, 451
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 127, 397
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 3 cut(s) 272, 392, 451
BstXI CCANNNNNNTGG 2 cut(s) 199, 380
BstYI RGATCY 3 cut(s) 272, 392, 451
BsuRI GGCC 2 cut(s) 153, 422
BtgI CCRYGG 3 cut(s) 48, 219, 306
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 475
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 4 cut(s) 152, 163, 421, 551
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 234, 478
CviAII CATG 4 cut(s) 49, 220, 307, 399
CviJI RGCY 6 cut(s) 15, 89, 95, 153, 177, 422
CviKI_1 RGCY 6 cut(s) 15, 89, 95, 153, 177, 422
CviQI GTAC 2 cut(s) 234, 478
DdeI CTNAG 1 cut(s) 345
DpnI GATC 4 cut(s) 243, 274, 394, 453
DpnII GATC 4 cut(s) 241, 272, 392, 451
Eco130I CCWWGG 3 cut(s) 48, 219, 306
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 163, 551
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 48, 219, 306
EcoT22I ATGCAT 2 cut(s) 199, 320
ErhI CCWWGG 3 cut(s) 48, 219, 306
FaeI CATG 4 cut(s) 52, 223, 310, 402
FaqI GGGAC 2 cut(s) 30, 537
FatI CATG 4 cut(s) 48, 219, 306, 398
FauI CCCGC 1 cut(s) 441
Fnu4HI GCNGC 2 cut(s) 141, 411
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 141, 411
FspBI CTAG 4 cut(s) 156, 290, 390, 572
GluI GCNGC 2 cut(s) 141, 411
GsaI CCCAGC 1 cut(s) 477
HaeIII GGCC 2 cut(s) 153, 422
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 440
Hin1II CATG 4 cut(s) 52, 223, 310, 402
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 246, 348
HpyAV CCTTC 3 cut(s) 14, 253, 574
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 7 cut(s) 197, 318, 364, 398, 413, 428, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 4 cut(s) 52, 223, 310, 402
KflI GGGWCCC 1 cut(s) 551
KpnI GGTACC 1 cut(s) 481
Kzo9I GATC 4 cut(s) 241, 272, 392, 451
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 8 cut(s) 30, 250, 404, 420, 431, 459, 478, 568
Lsp1109I GCAGC 2 cut(s) 127, 397
MaeI CTAG 4 cut(s) 156, 290, 390, 572
MaeIII GTNAC 1 cut(s) 457
MalI GATC 4 cut(s) 243, 274, 394, 453
MboI GATC 4 cut(s) 241, 272, 392, 451
MboII GAAGA 2 cut(s) 17, 323
MflI RGATCY 3 cut(s) 272, 392, 451
MluCI AATT 5 cut(s) 63, 226, 328, 438, 517
MnlI CCTC 5 cut(s) 51, 154, 348, 377, 504
Mph1103I ATGCAT 2 cut(s) 199, 320
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 3 cut(s) 332, 483, 515
MslI CAYNNNNRTG 2 cut(s) 53, 359
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 2 cut(s) 193, 320
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 419
NcoI CCATGG 3 cut(s) 48, 219, 306
NdeII GATC 4 cut(s) 241, 272, 392, 451
NlaIII CATG 4 cut(s) 52, 223, 310, 402
NlaIV GGNNCC 4 cut(s) 176, 479, 552, 553
NsiI ATGCAT 2 cut(s) 199, 320
NspI RCATGY 1 cut(s) 402
PctI GAATGC 2 cut(s) 193, 320
PdmI GAANNNNTTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 2 cut(s) 142, 412
PpuMI RGGWCCY 1 cut(s) 551
Psp5II RGGWCCY 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 4 cut(s) 176, 479, 552, 553
PspPI GGNCC 4 cut(s) 152, 163, 421, 551
PspPPI RGGWCCY 1 cut(s) 551
PstI CTGCAG 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 272, 392, 451
RsaI GTAC 2 cut(s) 235, 479
RsaNI GTAC 2 cut(s) 234, 478
RseI CAYNNNNRTG 2 cut(s) 53, 359
SaqAI TTAA 3 cut(s) 332, 483, 515
SatI GCNGC 2 cut(s) 141, 411
Sau3AI GATC 4 cut(s) 241, 272, 392, 451
Sau96I GGNCC 4 cut(s) 152, 163, 421, 551
ScrFI CCNGG 1 cut(s) 419
SetI ASST 5 cut(s) 25, 97, 165, 483, 496
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 2 cut(s) 163, 551
SmiMI CAYNNNNRTG 2 cut(s) 53, 359
SpeI ACTAGT 1 cut(s) 571
Sse9I AATT 5 cut(s) 63, 226, 328, 438, 517
SsiI CCGC 1 cut(s) 448
SspI AATATT 1 cut(s) 508
SspMI CTAG 4 cut(s) 156, 290, 390, 572
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 3 cut(s) 48, 219, 306
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 67
TaqII GACCGA 1 cut(s) 330
TasI AATT 5 cut(s) 63, 226, 328, 438, 517
Tru1I TTAA 3 cut(s) 332, 483, 515
Tru9I TTAA 3 cut(s) 332, 483, 515
TscAI CASTG 1 cut(s) 475
TseI GCWGC 2 cut(s) 140, 410
TspDTI ATGAA 1 cut(s) 556
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 163, 551
XapI RAATTY 5 cut(s) 63, 226, 328, 438, 517
XceI RCATGY 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 4 cut(s) 156, 290, 390, 572
Zsp2I ATGCAT 2 cut(s) 199, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.