Rroxscaffold_5G00360380

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001974
Physical Location & Seq
Reverse (-)
40808472 .. 40812979
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360380.1

Sequence Viewer

Length: 729 bp
ATGGAGTTCGTCAGCCCTGAAGGTCTTCGTTTAGATGGTCGCCGTCCCATGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCTGACGGTTCTGCTATGTTTGAGATGGGCAACACCAAAGTTGTTGCTGCCGTATATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAACTGAATGCCAATGCATTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGTTGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAATTTAATGCCTCGGTCTCAGATAGACATTTTTGTGCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATCTTGTTACTTCCTGCAGTGCTGGGTACCTTAACAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGTGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGATAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTTTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTACTGGAGAATACAAAGCAATTGGAGTATCGTCGAGGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000460 GO:0000785 GO:0000956 GO:0001558 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0005856 GO:0006139 GO:0006259 GO:0006304 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008334 GO:0008408 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030307 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040008 GO:0042254 GO:0043144 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043487 GO:0043488 GO:0043628 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045006 GO:0045111 GO:0045927 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071044 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

242

Amino Acids

26.67

Weight (kDa)

5.26

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 18 - 149 2.1e-39 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 152 - 217 6.8e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 1 cut(s) 451
AclWI GGATC 2 cut(s) 270, 462
AcsI RAATTY 4 cut(s) 63, 226, 331, 441
AcuI CTGAAG 2 cut(s) 39, 572
AfaI GTAC 2 cut(s) 235, 482
AfiI CCNNNNNNNGG 4 cut(s) 49, 160, 243, 310
AgsI TTSAA 1 cut(s) 623
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 2 cut(s) 270, 462
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 2 cut(s) 151, 423
ApeKI GCWGC 3 cut(s) 140, 413, 651
ApoI RAATTY 4 cut(s) 63, 226, 331, 441
Asp700I GAANNNNTTC 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 480
AspS9I GGNCC 3 cut(s) 152, 163, 424
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 127, 400, 638
BccI CCATC 4 cut(s) 29, 112, 377, 586
BceAI ACGGC 2 cut(s) 27, 128
BciT130I CCWGG 1 cut(s) 422
BciVI GTATCC 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 3 cut(s) 156, 293, 393
BfmI CTRYAG 1 cut(s) 469
BfuI GTATCC 1 cut(s) 607
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 141, 414, 652
BlsI GCNGC 3 cut(s) 142, 415, 653
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 152, 163, 424
BmiI GGNNCC 2 cut(s) 176, 482
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 2 cut(s) 552, 710
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 5 cut(s) 48, 219, 309, 341, 420
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 160, 243, 310
Bse1I ACTGG 1 cut(s) 693
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 5 cut(s) 48, 219, 309, 341, 420
BseGI GGATG 2 cut(s) 252, 601
BseLI CCNNNNNNNGG 4 cut(s) 49, 160, 243, 310
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 693
BseXI GCAGC 3 cut(s) 127, 400, 638
BseYI CCCAGC 1 cut(s) 476
BshFI GGCC 2 cut(s) 153, 425
BshNI GGYRCC 1 cut(s) 480
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 49, 160, 243, 310
BsmAI GTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 193, 323
BsnI GGCC 2 cut(s) 153, 425
Bso31I GGTCTC 1 cut(s) 351
Bsp143I GATC 4 cut(s) 241, 275, 395, 454
Bsp19I CCATGG 3 cut(s) 48, 219, 309
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 153, 425
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 2 cut(s) 176, 482
BspMAI CTGCAG 1 cut(s) 473
BspPI GGATC 2 cut(s) 270, 462
BspT107I GGYRCC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 693
BssECI CCNNGG 5 cut(s) 48, 219, 309, 341, 420
BssMI GATC 4 cut(s) 241, 275, 395, 454
BssT1I CCWWGG 3 cut(s) 48, 219, 309
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 588
BstDEI CTNAG 2 cut(s) 348, 600
BstDSI CCRYGG 3 cut(s) 48, 219, 309
BstF5I GGATG 2 cut(s) 252, 601
BstKTI GATC 4 cut(s) 244, 278, 398, 457
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 4 cut(s) 241, 275, 395, 454
BstMWI GCNNNNNNNGC 2 cut(s) 422, 536
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 127, 400, 638
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 3 cut(s) 275, 395, 454
BstXI CCANNNNNNTGG 2 cut(s) 199, 383
BstYI RGATCY 3 cut(s) 275, 395, 454
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 2 cut(s) 153, 425
BtgI CCRYGG 3 cut(s) 48, 219, 309
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 252, 601
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 437
Cfr13I GGNCC 3 cut(s) 152, 163, 424
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 234, 481
CviAII CATG 4 cut(s) 49, 220, 310, 402
CviJI RGCY 7 cut(s) 15, 89, 95, 153, 177, 425, 651
CviKI_1 RGCY 7 cut(s) 15, 89, 95, 153, 177, 425, 651
CviQI GTAC 2 cut(s) 234, 481
DdeI CTNAG 2 cut(s) 348, 600
DpnI GATC 4 cut(s) 243, 277, 397, 456
DpnII GATC 4 cut(s) 241, 275, 395, 454
DraI TTTAAA 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco130I CCWWGG 3 cut(s) 48, 219, 309
Eco31I GGTCTC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 39, 572
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 3 cut(s) 48, 219, 309
EcoT22I ATGCAT 2 cut(s) 199, 323
ErhI CCWWGG 3 cut(s) 48, 219, 309
FaeI CATG 4 cut(s) 52, 223, 313, 405
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FaqI GGGAC 1 cut(s) 30
FatI CATG 4 cut(s) 48, 219, 309, 401
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 141, 414, 652
FokI GGATG 2 cut(s) 259, 608
Fsp4HI GCNGC 3 cut(s) 141, 414, 652
FspBI CTAG 3 cut(s) 156, 293, 393
GluI GCNGC 3 cut(s) 141, 414, 652
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 2 cut(s) 552, 710
HaeIII GGCC 2 cut(s) 153, 425
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 443
Hin1II CATG 4 cut(s) 52, 223, 313, 405
HinfI GANTC 1 cut(s) 580
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 246, 351, 591
Hpy99I CGWCG 1 cut(s) 720
HpyAV CCTTC 3 cut(s) 14, 253, 641
HpyCH4III ACNGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 536
HpyF3I CTNAG 2 cut(s) 348, 600
Hsp92II CATG 4 cut(s) 52, 223, 313, 405
KpnI GGTACC 1 cut(s) 484
Kzo9I GATC 4 cut(s) 241, 275, 395, 454
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 9 cut(s) 30, 250, 407, 423, 434, 462, 481, 516, 674
Lsp1109I GCAGC 3 cut(s) 127, 400, 638
LweI GCATC 1 cut(s) 586
MaeI CTAG 3 cut(s) 156, 293, 393
MaeIII GTNAC 3 cut(s) 460, 544, 577
MalI GATC 4 cut(s) 243, 277, 397, 456
MboI GATC 4 cut(s) 241, 275, 395, 454
MboII GAAGA 5 cut(s) 17, 326, 533, 575, 578
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 3 cut(s) 275, 395, 454
MluCI AATT 6 cut(s) 63, 226, 331, 441, 555, 704
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 2 cut(s) 549, 591
MnlI CCTC 7 cut(s) 51, 154, 351, 380, 507, 527, 713
Mph1103I ATGCAT 2 cut(s) 199, 323
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 3 cut(s) 335, 486, 509
MslI CAYNNNNRTG 2 cut(s) 53, 362
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 704
Mva1269I GAATGC 2 cut(s) 193, 323
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 422, 536
NcoI CCATGG 3 cut(s) 48, 219, 309
NdeII GATC 4 cut(s) 241, 275, 395, 454
NlaIII CATG 4 cut(s) 52, 223, 313, 405
NlaIV GGNNCC 2 cut(s) 176, 482
NmuCI GTSAC 2 cut(s) 544, 577
NsiI ATGCAT 2 cut(s) 199, 323
NspI RCATGY 1 cut(s) 405
PctI GAATGC 2 cut(s) 193, 323
PdmI GAANNNNTTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 3 cut(s) 142, 415, 653
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 176, 482
PspPI GGNCC 3 cut(s) 152, 163, 424
PstI CTGCAG 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 3 cut(s) 275, 395, 454
RsaI GTAC 2 cut(s) 235, 482
RsaNI GTAC 2 cut(s) 234, 481
RseI CAYNNNNRTG 2 cut(s) 53, 362
SaqAI TTAA 3 cut(s) 335, 486, 509
SatI GCNGC 3 cut(s) 141, 414, 652
Sau3AI GATC 4 cut(s) 241, 275, 395, 454
Sau96I GGNCC 3 cut(s) 152, 163, 424
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 422
SetI ASST 7 cut(s) 25, 97, 165, 272, 486, 499, 538
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 53, 362
Sse9I AATT 6 cut(s) 63, 226, 331, 441, 555, 704
SsiI CCGC 1 cut(s) 451
SspI AATATT 1 cut(s) 684
SspMI CTAG 3 cut(s) 156, 293, 393
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 3 cut(s) 48, 219, 309
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 3 cut(s) 67, 645, 718
TaqII GACCGA 1 cut(s) 333
TasI AATT 6 cut(s) 63, 226, 331, 441, 555, 704
Tru1I TTAA 3 cut(s) 335, 486, 509
Tru9I TTAA 3 cut(s) 335, 486, 509
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 2 cut(s) 544, 577
TseI GCWGC 3 cut(s) 140, 413, 651
Tsp45I GTSAC 2 cut(s) 544, 577
TspRI CASTG 1 cut(s) 478
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 4 cut(s) 63, 226, 331, 441
XceI RCATGY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 3 cut(s) 156, 293, 393
Zsp2I ATGCAT 2 cut(s) 199, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.