AT4G07515

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000266
Physical Location & Seq
Reverse (-)
4314957 .. 4315510
554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G07515.1

Sequence Viewer

Length: 312 bp
ATGGTTGTAGCTTTGGTGTGTGCGTTTGTTCCTGTATTTTCTGTCGAAGAAGCTGAAGCAAAATCATTAAGGGACACTTGTCTCGTTAAAATCACTCCTAAATGTGCATTGAATATAATCACTGTTGTTTTTGGAAATGGAACCCTCATTGAGGCTTGTTGCAACGATCTTGTCCAAGAAGGAAAAGTGTGTCACGATAATCTCATTAAATATATTGCTGACAGACCAAGCTTAATTGGCCGTGAAACACAATACTTGAAGAAGAGGGATGAAGTGTGGAGTCATTGTGTCTCAATCTCTAAAACCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

103

Amino Acids

11.37

Weight (kDa)

6.7

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 26 - 97 1.5e-13 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 2 cut(s) 112, 259
AluBI AGCT 3 cut(s) 11, 53, 231
AluI AGCT 3 cut(s) 11, 53, 231
Alw26I GTCTC 2 cut(s) 86, 295
AoxI GGCC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 86, 295
BmiI GGNNCC 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 151
BshFI GGCC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 2 cut(s) 86, 295
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 142
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 257
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 2 cut(s) 86, 295
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstPAI GACNNNNGTC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 120
CviJI RGCY 5 cut(s) 11, 53, 155, 231, 240
CviKI_1 RGCY 5 cut(s) 11, 53, 155, 231, 240
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 149
FaiI YATR 2 cut(s) 116, 213
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 1 cut(s) 86
FokI GGATG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 1 cut(s) 280
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 107, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 59, 271, 274
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 3 cut(s) 145, 155, 258
MseI TTAA 5 cut(s) 68, 87, 207, 233, 310
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 191
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 142
SaqAI TTAA 5 cut(s) 68, 87, 207, 233, 310
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 289
SetI ASST 3 cut(s) 13, 55, 233
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 306
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 234
Tru1I TTAA 5 cut(s) 68, 87, 207, 233, 310
Tru9I TTAA 5 cut(s) 68, 87, 207, 233, 310
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.