Rroxscaffold_5G00356310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000266
Physical Location & Seq
Forward (+)
35528968 .. 35531305
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356310.1

Sequence Viewer

Length: 720 bp
ATGGCCGGACCATGTAGGTACTACCTTTTGGTGATTCTTCTCTTGGAGGTGACATTAAATGCATCTTCAACCCCAACTCCACAGGCACTAGCCAATGTGAAAGAGTGTGAAAGACGGTTCACAAATAAGTGTGGGGTCGAGTTAGAAAACAGTATTTTCAATGATAGGTTTTACGCACGACATCCTAGTGACAACAAAGCCAAAGCCTTGGCAATGGGCAAAAAGATTTGGAAAGGTTGCGTCGCTATTGACTATTCAAACACACACGAGACCAACGGTGTAAAGGAATGTCTAGAAAAGTTCAACCCTAAGTGTGAAGAGAAAATAGAAAACAGTATATACCAAGGTGTGAGCGATCTCGGGCACCCAATCACCATCTTTGCCGCTCTCTTGCATCGAAACACTTCCTCCCAAGTACGACAACACCTGCAAGGAGATCTTCAAGGGCTGGAATTGCATTTCCAGCAACAATTCCAACGGCGCGAACTCGTCAAGTCTAGGTGGAAGCCTAAGCATTGTGATCCGGCGAATCTCGACACTAACGGCGCCGACATCAAGTCAATGTCGGCCCTAAAGGCGAGGGACTGGGGTTGTGCGATCGGAGGCGGCTCGGGGGTGCCATGGTCGTGGCGGCGCGGTCGGGCTCTCCTTGGACGAACCCGATCCGGGTTGGTTTTCTTGGATCCGATCTGGAGAAGGCGTTGTTTGGTGGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.05

Weight (kDa)

9.43

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 435
AccB1I GGYRCC 3 cut(s) 363, 545, 616
AccBSI CCGCTC 1 cut(s) 386
AccII CGCG 2 cut(s) 483, 636
AciI CCGC 4 cut(s) 384, 606, 631, 636
AclWI GGATC 4 cut(s) 515, 657, 677, 690
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 2 cut(s) 20, 417
AfiI CCNNNNNNNGG 1 cut(s) 666
AgsI TTSAA 5 cut(s) 69, 160, 258, 304, 443
AhdI GACNNNNNGTC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 4 cut(s) 515, 657, 677, 690
Ama87I CYCGRG 2 cut(s) 359, 610
AoxI GGCC 2 cut(s) 3, 567
Asp700I GAANNNNTTC 1 cut(s) 403
AspLEI GCGC 3 cut(s) 483, 548, 636
AspS9I GGNCC 2 cut(s) 8, 568
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 3 cut(s) 43, 61, 364
AvaI CYCGRG 2 cut(s) 359, 610
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 366
BamHI GGATCC 1 cut(s) 682
BanI GGYRCC 3 cut(s) 363, 545, 616
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 266
BccI CCATC 1 cut(s) 383
BceAI ACGGC 2 cut(s) 494, 559
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 4 cut(s) 89, 186, 293, 498
BfoI RGCGCY 1 cut(s) 549
BfuAI ACCTGC 1 cut(s) 435
BglI GCCNNNNNGGC 1 cut(s) 575
BglII AGATCT 1 cut(s) 436
BisI GCNGC 3 cut(s) 384, 607, 632
BlsI GCNGC 3 cut(s) 385, 608, 633
Bme1390I CCNGG 1 cut(s) 667
Bme18I GGWCC 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 556
BmeT110I CYCGRG 2 cut(s) 359, 610
BmgT120I GGNCC 2 cut(s) 8, 568
BmiI GGNNCC 4 cut(s) 365, 547, 618, 684
BmrFI CCNGG 1 cut(s) 667
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 2 cut(s) 71, 403
BmuI ACTGGG 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 712
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 4 cut(s) 207, 343, 620, 649
BsaXI ACNNNNNCTCC 6 cut(s) 61, 91, 392, 422, 685, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 666
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 4 cut(s) 207, 343, 620, 649
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 666
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 366
Bsh1236I CGCG 2 cut(s) 483, 636
Bsh1285I CGRYCG 2 cut(s) 600, 640
BshFI GGCC 2 cut(s) 5, 569
BshNI GGYRCC 3 cut(s) 363, 545, 616
BsiEI CGRYCG 2 cut(s) 600, 640
BsiHKCI CYCGRG 2 cut(s) 359, 610
BsiSI CCGG 3 cut(s) 6, 524, 666
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 1 cut(s) 666
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 2 cut(s) 5, 569
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 2 cut(s) 359, 610
Bsp1286I GDGCHC 2 cut(s) 366, 646
Bsp143I GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
Bsp19I CCATGG 1 cut(s) 620
BspACI CCGC 4 cut(s) 384, 606, 631, 636
BspANI GGCC 2 cut(s) 5, 569
BspFNI CGCG 2 cut(s) 483, 636
BspLI GGNNCC 4 cut(s) 365, 547, 618, 684
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 4 cut(s) 515, 657, 677, 690
BspT107I GGYRCC 3 cut(s) 363, 545, 616
BspTNI GGTCTC 1 cut(s) 263
BsrBI CCGCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 4 cut(s) 207, 343, 620, 649
BssMI GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
BssNI GRCGYC 1 cut(s) 546
BssSI CACGAG 1 cut(s) 266
BssT1I CCWWGG 4 cut(s) 207, 343, 620, 649
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 117, 152, 278, 335
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 309, 510
BstDSI CCRYGG 1 cut(s) 620
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 2 cut(s) 483, 636
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 3 cut(s) 483, 548, 636
BstKTI GATC 7 cut(s) 358, 439, 523, 600, 665, 685, 690
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
BstMCI CGRYCG 2 cut(s) 600, 640
BstMWI GCNNNNNNNGC 3 cut(s) 454, 463, 575
BstSCI CCNGG 1 cut(s) 665
BstSLI GKGCMC 1 cut(s) 366
BstUI CGCG 2 cut(s) 483, 636
BstX2I RGATCY 2 cut(s) 436, 682
BstXI CCANNNNNNTGG 2 cut(s) 208, 627
BstYI RGATCY 2 cut(s) 436, 682
BsuRI GGCC 2 cut(s) 5, 569
BtgI CCRYGG 1 cut(s) 620
BtsCI GGATG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 435
CfoI GCGC 3 cut(s) 483, 548, 636
Cfr13I GGNCC 2 cut(s) 8, 568
CseI GACGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 19, 416
CviAII CATG 2 cut(s) 12, 621
CviJI RGCY 9 cut(s) 5, 92, 200, 206, 448, 508, 569, 609, 644
CviKI_1 RGCY 9 cut(s) 5, 92, 200, 206, 448, 508, 569, 609, 644
CviQI GTAC 2 cut(s) 19, 416
DdeI CTNAG 2 cut(s) 309, 510
DinI GGCGCC 1 cut(s) 547
DpnI GATC 7 cut(s) 357, 438, 522, 599, 664, 684, 689
DpnII GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
DriI GACNNNNNGTC 1 cut(s) 556
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 312
Eam1105I GACNNNNNGTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 4 cut(s) 207, 343, 620, 649
Eco24I GRGCYC 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 8
Eco88I CYCGRG 2 cut(s) 359, 610
EcoT14I CCWWGG 4 cut(s) 207, 343, 620, 649
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 646
EgeI GGCGCC 1 cut(s) 547
EheI GGCGCC 1 cut(s) 547
ErhI CCWWGG 4 cut(s) 207, 343, 620, 649
FaeI CATG 2 cut(s) 15, 624
FaiI YATR 4 cut(s) 13, 338, 340, 622
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 596
FatI CATG 2 cut(s) 11, 620
Fnu4HI GCNGC 3 cut(s) 384, 607, 632
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 3 cut(s) 384, 607, 632
FspBI CTAG 4 cut(s) 89, 186, 293, 498
GlaI GCGC 3 cut(s) 482, 547, 635
GluI GCNGC 3 cut(s) 384, 607, 632
GsuI CTGGAG 1 cut(s) 712
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 2 cut(s) 5, 569
HapII CCGG 3 cut(s) 6, 524, 666
HgaI GACGC 1 cut(s) 229
HhaI GCGC 3 cut(s) 483, 548, 636
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 2 cut(s) 15, 624
Hin6I GCGC 3 cut(s) 481, 546, 634
HinP1I GCGC 3 cut(s) 481, 546, 634
HinfI GANTC 2 cut(s) 34, 529
HpaII CCGG 3 cut(s) 6, 524, 666
HphI GGTGA 3 cut(s) 43, 61, 364
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 602, 687
Hpy188III TCNNGA 3 cut(s) 293, 533, 691
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 4 cut(s) 117, 152, 278, 335
HpyCH4V TGCA 4 cut(s) 62, 394, 430, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 463, 575
HpyF3I CTNAG 2 cut(s) 309, 510
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 2 cut(s) 15, 624
HspAI GCGC 3 cut(s) 481, 546, 634
KasI GGCGCC 1 cut(s) 545
Kzo9I GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
LpnPI CCDG 9 cut(s) 19, 68, 434, 440, 476, 537, 571, 676, 679
LweI GCATC 2 cut(s) 71, 403
MaeI CTAG 4 cut(s) 89, 186, 293, 498
MaeIII GTNAC 2 cut(s) 49, 188
MalI GATC 7 cut(s) 357, 438, 522, 599, 664, 684, 689
MbiI CCGCTC 1 cut(s) 386
MboI GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
MboII GAAGA 4 cut(s) 29, 57, 329, 431
MflI RGATCY 2 cut(s) 436, 682
MhlI GDGCHC 2 cut(s) 366, 646
MluCI AATT 2 cut(s) 452, 470
Mly113I GGCGCC 1 cut(s) 546
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 4 cut(s) 40, 418, 573, 596
Mph1103I ATGCAT 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 403
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 2 cut(s) 186, 625
MspI CCGG 3 cut(s) 6, 524, 666
MspR9I CCNGG 1 cut(s) 667
MvnI CGCG 2 cut(s) 483, 636
MwoI GCNNNNNNNGC 3 cut(s) 454, 463, 575
NarI GGCGCC 1 cut(s) 546
NciI CCSGG 1 cut(s) 667
NcoI CCATGG 1 cut(s) 620
NdeII GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
NlaIII CATG 2 cut(s) 15, 624
NlaIV GGNNCC 4 cut(s) 365, 547, 618, 684
NmuCI GTSAC 2 cut(s) 49, 188
NsiI ATGCAT 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 34, 529
PkrI GCNGC 3 cut(s) 385, 608, 633
Ple19I CGATCG 1 cut(s) 600
PluTI GGCGCC 1 cut(s) 549
PspN4I GGNNCC 4 cut(s) 365, 547, 618, 684
PspPI GGNCC 2 cut(s) 8, 568
PsuI RGATCY 2 cut(s) 436, 682
PvuI CGATCG 1 cut(s) 600
RsaI GTAC 2 cut(s) 20, 417
RsaNI GTAC 2 cut(s) 19, 416
RseI CAYNNNNRTG 2 cut(s) 186, 625
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 384, 607, 632
Sau3AI GATC 7 cut(s) 355, 436, 520, 597, 662, 682, 687
Sau96I GGNCC 2 cut(s) 8, 568
ScrFI CCNGG 1 cut(s) 667
SduI GDGCHC 2 cut(s) 366, 646
SetI ASST 8 cut(s) 20, 27, 51, 170, 238, 349, 429, 503
SfaNI GCATC 2 cut(s) 71, 403
SfoI GGCGCC 1 cut(s) 547
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 186, 625
Sse9I AATT 2 cut(s) 452, 470
SsiI CCGC 4 cut(s) 384, 606, 631, 636
SspDI GGCGCC 1 cut(s) 545
SspMI CTAG 4 cut(s) 89, 186, 293, 498
StyD4I CCNGG 1 cut(s) 665
StyI CCWWGG 4 cut(s) 207, 343, 620, 649
TaaI ACNGT 4 cut(s) 117, 152, 278, 335
TaqI TCGA 3 cut(s) 138, 397, 534
TasI AATT 2 cut(s) 452, 470
TauI GCSGC 3 cut(s) 386, 609, 634
TfiI GAWTC 2 cut(s) 34, 529
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseFI GTSAC 2 cut(s) 49, 188
Tsp45I GTSAC 2 cut(s) 49, 188
VpaK11BI GGWCC 1 cut(s) 8
XbaI TCTAGA 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 4 cut(s) 89, 186, 293, 498
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.