Rroxscaffold_1G00000190

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000266
Physical Location & Seq
Reverse (-)
165951 .. 168488
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000190.1

Sequence Viewer

Length: 729 bp
ATGGCCGGACCAAGCAGGTGCCATCTTTTGGTGATTTTTCTCTTGCAGGTGACATTAAATGCTGTTGCAACCCCAACACCGGAGGGGCCAGCAAATGTTAAAGACCGTGCAAGACAGTTCACCGAAAAGTGCGGGATCGAAGTAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGCCACGATACCTTCCTCAACACGTCCCTTGCGGCACTTCATCCTAGTGCAGACAAAGCTCAAACTTTGGCAAAGGGCGAAAAAATTTGGACGGAGTGCGTTGCCATCGACAATTCGGACAAACACGAGACCAAGCCCGTAAAGGAATGCTTGGAAAAGTTGCCCCCTACGTGCGGAGAGGAAATAGAGAAAAGCATTTATCAAGGTACGGTTGTGACCGATGCTTGTTGTCGTGATCTTGTCTCGTGGGGAAAATCATGCCACGATATCATCGCAGAGCGAAATCACGATGTACGTCATCCCAGTGTCAACAAAGCACAGGCTTTGGCAAGTAGCGAAAAAGCTTGCCAAGACAATGCGAGGCTAGGCAATGCCATGGCGACGAGAGGCTTGCTAGCGAAGGCTAATGCAATGTCAAGCCAAGGCTTGCCAAGACAATGCCGAGGCTTGCTAGCGAGGCTAATGCAATGCCAAGCCAAGGCTTGCCAAGACAATGCGAGGCTTGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

242

Amino Acids

26.21

Weight (kDa)

8.15

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 42 - 106 1.7e-10 Prolamin-like
Prolamin_like PF05617 121 - 165 2.2e-07 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 6, 37
Acc36I ACCTGC 2 cut(s) 6, 37
AccB1I GGYRCC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 3 cut(s) 132, 248, 390
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 2 cut(s) 424, 510
AfiI CCNNNNNNNGG 4 cut(s) 28, 79, 389, 694
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 3 cut(s) 275, 560, 726
AluI AGCT 3 cut(s) 275, 560, 726
Alw26I GTCTC 2 cut(s) 338, 463
AlwI GGATC 1 cut(s) 143
AoxI GGCC 2 cut(s) 3, 86
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 8, 86
AsuHPI GGTGA 3 cut(s) 43, 61, 112
AsuNHI GCTAGC 3 cut(s) 610, 667, 722
AvaII GGWCC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanI GGYRCC 1 cut(s) 18
BauI CACGAG 2 cut(s) 341, 460
BccI CCATC 2 cut(s) 30, 329
BcgI CGANNNNNNTGC 4 cut(s) 589, 623, 661, 695
BcoDI GTCTC 2 cut(s) 338, 463
BfaI CTAG 6 cut(s) 261, 581, 611, 668, 723, 727
BfuAI ACCTGC 2 cut(s) 6, 37
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 8, 86
BmiI GGNNCC 2 cut(s) 20, 87
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 3 cut(s) 614, 671, 726
BmuI ACTGGG 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 591, 637, 658, 693
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 79, 389, 694
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 3 cut(s) 592, 633, 689
BseDI CCNNGG 4 cut(s) 591, 637, 658, 693
BseGI GGATG 2 cut(s) 256, 514
BseLI CCNNNNNNNGG 4 cut(s) 28, 79, 389, 694
BseMI GCAATG 3 cut(s) 592, 633, 689
BseNI ACTGG 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 2 cut(s) 5, 88
BshNI GGYRCC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 6, 80
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 4 cut(s) 28, 79, 389, 694
BsmAI GTCTC 2 cut(s) 338, 463
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 5, 88
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 3 cut(s) 135, 193, 451
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 3 cut(s) 132, 248, 390
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 2 cut(s) 20, 87
BspMI ACCTGC 2 cut(s) 6, 37
BspOI GCTAGC 3 cut(s) 614, 671, 726
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 3 cut(s) 592, 633, 689
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 4 cut(s) 591, 637, 658, 693
BssMI GATC 3 cut(s) 135, 193, 451
BssSI CACGAG 2 cut(s) 341, 460
BssT1I CCWWGG 3 cut(s) 591, 637, 693
Bst2BI CACGAG 2 cut(s) 341, 460
Bst4CI ACNGT 3 cut(s) 107, 117, 427
BstBAI YACGTR 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 256, 514
BstKTI GATC 3 cut(s) 138, 196, 454
BstMAI GTCTC 2 cut(s) 338, 463
BstMBI GATC 3 cut(s) 135, 193, 451
BstMWI GCNNNNNNNGC 3 cut(s) 272, 673, 719
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 5, 88
BtgI CCRYGG 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 472
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 256, 514
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 2 cut(s) 6, 37
Cfr13I GGNCC 2 cut(s) 8, 86
Csp6I GTAC 2 cut(s) 423, 509
CviAII CATG 3 cut(s) 216, 474, 592
CviQI GTAC 2 cut(s) 423, 509
DpnI GATC 3 cut(s) 137, 195, 453
DpnII GATC 3 cut(s) 135, 193, 451
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 591, 637, 693
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 8
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 3 cut(s) 591, 637, 693
ErhI CCWWGG 3 cut(s) 591, 637, 693
FaeI CATG 3 cut(s) 219, 477, 595
FaiI YATR 3 cut(s) 217, 475, 593
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 226
FatI CATG 3 cut(s) 215, 473, 591
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 2 cut(s) 243, 501
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 6 cut(s) 261, 581, 611, 668, 723, 727
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 2 cut(s) 6, 80
Hin1II CATG 3 cut(s) 219, 477, 595
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 1 cut(s) 558
HpaII CCGG 2 cut(s) 6, 80
HphI GGTGA 3 cut(s) 43, 61, 112
Hpy166II GTNNAC 3 cut(s) 120, 212, 526
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 3 cut(s) 191, 449, 503
Hpy8I GTNNAC 3 cut(s) 120, 212, 526
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 2 cut(s) 238, 610
HpyCH4III ACNGT 3 cut(s) 107, 117, 427
HpyCH4IV ACGT 3 cut(s) 239, 386, 511
HpyCH4V TGCA 6 cut(s) 46, 68, 110, 266, 626, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 673, 719
HpySE526I ACGT 3 cut(s) 239, 386, 511
Hsp92II CATG 3 cut(s) 219, 477, 595
Kzo9I GATC 3 cut(s) 135, 193, 451
LpnPI CCDG 6 cut(s) 19, 32, 93, 102, 521, 532
LweI GCATC 1 cut(s) 427
MaeI CTAG 6 cut(s) 261, 581, 611, 668, 723, 727
MaeII ACGT 3 cut(s) 239, 386, 511
MaeIII GTNAC 2 cut(s) 49, 430
MalI GATC 3 cut(s) 137, 195, 453
MboI GATC 3 cut(s) 135, 193, 451
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 300, 328
MnlI CCTC 8 cut(s) 76, 242, 388, 570, 596, 653, 666, 708
MseI TTAA 2 cut(s) 56, 99
MslI CAYNNNNRTG 2 cut(s) 261, 519
MspI CCGG 2 cut(s) 6, 80
Mva1269I GAATGC 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 272, 673, 719
NcoI CCATGG 1 cut(s) 591
NdeII GATC 3 cut(s) 135, 193, 451
NheI GCTAGC 3 cut(s) 610, 667, 722
NlaIII CATG 3 cut(s) 219, 477, 595
NlaIV GGNNCC 2 cut(s) 20, 87
NmeAIII GCCGAG 1 cut(s) 683
NmuCI GTSAC 2 cut(s) 49, 430
PaqCI CACCTGC 2 cut(s) 6, 37
PctI GAATGC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 20, 87
PspPI GGNCC 2 cut(s) 8, 86
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 424, 510
RsaNI GTAC 2 cut(s) 423, 509
RseI CAYNNNNRTG 2 cut(s) 261, 519
SaqAI TTAA 2 cut(s) 56, 99
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 3 cut(s) 135, 193, 451
Sau96I GGNCC 2 cut(s) 8, 86
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 261, 519
Sse9I AATT 2 cut(s) 300, 328
SsiI CCGC 3 cut(s) 132, 248, 390
SspMI CTAG 6 cut(s) 261, 581, 611, 668, 723, 727
StyI CCWWGG 3 cut(s) 591, 637, 693
TaaI ACNGT 3 cut(s) 107, 117, 427
TaiI ACGT 3 cut(s) 242, 389, 514
TaqI TCGA 3 cut(s) 138, 190, 324
TaqII GACCGA 1 cut(s) 449
TasI AATT 2 cut(s) 300, 328
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 56, 99
Tru9I TTAA 2 cut(s) 56, 99
TscAI CASTG 1 cut(s) 526
TseFI GTSAC 2 cut(s) 49, 430
Tsp45I GTSAC 2 cut(s) 49, 430
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 1 cut(s) 526
Van91I CCANNNNNTGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 300
XspI CTAG 6 cut(s) 261, 581, 611, 668, 723, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.