Rroxscaffold_1G00028910

Ankyrin repeats (many copies)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
37286111 .. 37308356
22246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028910.1

Sequence Viewer

Length: 1137 bp
ATGTGGAGGCCGTTGCAACCACGGGGAAGTTGCTCCGCCGAGCCGAAATCGGCCAAATTCGCCGACCTTGGTTCTCCCAACTCCGGCCACCATAGCTCGAGTTCTTTGAGGGCTTTTCTAGCCCGAAGACGTGGATGCTATCCTCAAAACCTCTTGCGAGAGATTCGATCTCCACGGGCGGAATTGCGGAAATCGAGAGAAAGTGATAGAAAATTGAGCAAATTAGAGTTTCCCGAGAAAAAAGAAGAAATAGTGGCTTCAGTCAACCATGATCAATGTCAGCGAGAGAGACAAAGCTCAAACTTTGGCAAAGGGCGAAAAAATTTGGACGGAGTGCGTTGCCATCGACAATTCAGACAAACACGAGACCATGCCCGTAAAGGAATGCTTGGAAAAGTTCCCCCTACGTGCGGAGAGGAAATAGAGAAAAGCATTTATCAAGGTACGGTTGTGACTGATGCTTGTTGTCGTGATTTTGTCTCATGGGGAAAATCATGCCACGATATCATCGCAGAGCGAAATCACGATGTACGTCATCCCGGTGTCAACAAAGCACAGGCTTTGGCAAAGACAAATGGACATAAAGAGTTGGCCATGAAAACCGTCGGACAACCAAGTGATAGCAAGTACGACCACTTGAACAGGCTTGAGAAAGCATCGAGAGAACACAGGCGATCAAAGGCAGATTTGCGGACTATCCTTCGACGAATCGCCACTACCCATCTCTTACGCCCTAAACAAATCTCTGCGCTTTCCGAGCCCCAACGGTTCCAACTCGCCGCCGAAATGCTGTCCATCGTGGCCGCACGTGGCTCTAACTCTCGCAAGTTCTGCGTCCGCGATCGGGCTACTTCCGTTTCGGTTGGTGAAACGCATTTGTTAATTATTGGTTCTCTTTATCATCCTGCCTACACTTCCAATGTGGTGGAGGTCCCACATAAGAAGTCAATTATCGGAGATGGACTAGAAGAAGTTGATGAAGATCCTATGTTTGATGACATGTGCTCGGACAATCCTTTACTTATTGTACAAGATGATGATTCCAGCAAGAAAGCCGTACCAAGCTTAAAAAGTATTTGTGAAAAAGTGGCTGCGAGAGAAATTAGTGGAGCCATGAAATGCTATTCAACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

378

Amino Acids

42.42

Weight (kDa)

9.52

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 134 - 171 8.8e-06 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 840
AciI CCGC 8 cut(s) 36, 179, 187, 411, 691, 780, 804, 838
AclWI GGATC 1 cut(s) 977
AcoI YGGCCR 4 cut(s) 51, 85, 591, 801
AcsI RAATTY 2 cut(s) 56, 322
AcuI CTGAAG 1 cut(s) 243
AcvI CACGTG 1 cut(s) 809
AfaI GTAC 5 cut(s) 445, 531, 629, 1029, 1059
AfiI CCNNNNNNNGG 3 cut(s) 83, 410, 844
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 2 cut(s) 640, 1128
AjiI CACGTC 1 cut(s) 131
AluBI AGCT 3 cut(s) 96, 297, 1065
AluI AGCT 3 cut(s) 96, 297, 1065
Alw21I GWGCWC 1 cut(s) 1007
Alw26I GTCTC 3 cut(s) 283, 360, 484
AlwI GGATC 1 cut(s) 977
Ama87I CYCGRG 2 cut(s) 97, 233
AoxI GGCC 5 cut(s) 8, 51, 85, 591, 801
ApeKI GCWGC 1 cut(s) 1091
ApoI RAATTY 2 cut(s) 56, 322
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 1 cut(s) 931
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 878
AvaI CYCGRG 2 cut(s) 97, 233
AvaII GGWCC 1 cut(s) 931
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BalI TGGCCA 1 cut(s) 593
BanII GRGCYC 1 cut(s) 762
BauI CACGAG 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 1007
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 4 cut(s) 351, 729, 803, 953
BceAI ACGGC 1 cut(s) 1040
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 3 cut(s) 283, 360, 484
BfaI CTAG 2 cut(s) 119, 965
BisI GCNGC 3 cut(s) 780, 804, 1092
BlsI GCNGC 3 cut(s) 781, 805, 1093
Bme1390I CCNGG 1 cut(s) 540
Bme18I GGWCC 1 cut(s) 931
BmeT110I CYCGRG 2 cut(s) 97, 233
BmgBI CACGTC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 931
BmiI GGNNCC 3 cut(s) 770, 933, 1111
BmrFI CCNGG 1 cut(s) 540
BmsI GCATC 3 cut(s) 125, 448, 665
BpiI GAAGAC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 540
BsaAI YACGTR 2 cut(s) 408, 809
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 20, 67, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 410, 844
Bse8I GATNNNNATC 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 20, 67, 173
BseGI GGATG 3 cut(s) 140, 535, 901
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 3 cut(s) 83, 410, 844
BseXI GCAGC 1 cut(s) 1078
Bsh1236I CGCG 1 cut(s) 840
Bsh1285I CGRYCG 1 cut(s) 844
BshFI GGCC 5 cut(s) 10, 53, 87, 593, 803
BsiEI CGRYCG 1 cut(s) 844
BsiHKAI GWGCWC 1 cut(s) 1007
BsiHKCI CYCGRG 2 cut(s) 97, 233
BsiSI CCGG 2 cut(s) 84, 540
BslFI GGGAC 1 cut(s) 917
BslI CCNNNNNNNGG 3 cut(s) 83, 410, 844
BsmAI GTCTC 3 cut(s) 283, 360, 484
BsmFI GGGAC 1 cut(s) 917
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 5 cut(s) 10, 53, 87, 593, 803
Bso31I GGTCTC 1 cut(s) 360
BsoBI CYCGRG 2 cut(s) 97, 233
Bsp1286I GDGCHC 2 cut(s) 762, 1007
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 5 cut(s) 167, 271, 674, 841, 982
BspACI CCGC 8 cut(s) 36, 179, 187, 411, 691, 780, 804, 838
BspANI GGCC 5 cut(s) 10, 53, 87, 593, 803
BspFNI CGCG 1 cut(s) 840
BspLI GGNNCC 3 cut(s) 770, 933, 1111
BspPI GGATC 1 cut(s) 977
BspTNI GGTCTC 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 1027
BssECI CCNNGG 3 cut(s) 20, 67, 173
BssMI GATC 5 cut(s) 167, 271, 674, 841, 982
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 448, 604, 768
BstAPI GCANNNNNTGC 1 cut(s) 831
BstAUI TGTACA 1 cut(s) 1027
BstBAI YACGTR 2 cut(s) 408, 809
BstDSI CCRYGG 2 cut(s) 20, 173
BstF5I GGATG 3 cut(s) 140, 535, 901
BstFNI CGCG 1 cut(s) 840
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 5 cut(s) 170, 274, 677, 844, 985
BstMAI GTCTC 3 cut(s) 283, 360, 484
BstMBI GATC 5 cut(s) 167, 271, 674, 841, 982
BstMCI CGRYCG 1 cut(s) 844
BstMWI GCNNNNNNNGC 5 cut(s) 59, 93, 119, 757, 831
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 1 cut(s) 538
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 1 cut(s) 1078
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 982
BstXI CCANNNNNNTGG 1 cut(s) 925
BstYI RGATCY 1 cut(s) 982
BsuRI GGCC 5 cut(s) 10, 53, 87, 593, 803
BtgI CCRYGG 2 cut(s) 20, 173
BtgZI GCGATG 1 cut(s) 493
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 3 cut(s) 140, 535, 901
CfoI GCGC 1 cut(s) 751
Cfr13I GGNCC 1 cut(s) 931
CseI GACGC 1 cut(s) 823
Csp6I GTAC 5 cut(s) 444, 530, 628, 1028, 1058
CviAII CATG 7 cut(s) 269, 371, 483, 495, 595, 1000, 1114
CviQI GTAC 5 cut(s) 444, 530, 628, 1028, 1058
DpnI GATC 5 cut(s) 169, 273, 676, 843, 984
DpnII GATC 5 cut(s) 167, 271, 674, 841, 982
EaeI YGGCCR 4 cut(s) 51, 85, 591, 801
EciI GGCGGA 2 cut(s) 25, 194
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 762
Eco31I GGTCTC 1 cut(s) 360
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 931
Eco57I CTGAAG 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 809
Eco88I CYCGRG 2 cut(s) 97, 233
EcoO109I RGGNCCY 1 cut(s) 931
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 7 cut(s) 272, 374, 486, 498, 598, 1003, 1117
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FaqI GGGAC 1 cut(s) 917
FatI CATG 7 cut(s) 268, 370, 482, 494, 594, 999, 1113
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 780, 804, 1092
FokI GGATG 3 cut(s) 147, 522, 888
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 3 cut(s) 780, 804, 1092
FspBI CTAG 2 cut(s) 119, 965
GlaI GCGC 1 cut(s) 750
GluI GCNGC 3 cut(s) 780, 804, 1092
HaeIII GGCC 5 cut(s) 10, 53, 87, 593, 803
HapII CCGG 2 cut(s) 84, 540
HgaI GACGC 1 cut(s) 823
HhaI GCGC 1 cut(s) 751
Hin1II CATG 7 cut(s) 272, 374, 486, 498, 598, 1003, 1117
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 2 cut(s) 265, 547
HindII GTYRAC 2 cut(s) 265, 547
HindIII AAGCTT 1 cut(s) 1063
HinfI GANTC 3 cut(s) 163, 708, 1040
HpaII CCGG 2 cut(s) 84, 540
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 2 cut(s) 265, 547
Hpy188I TCNGA 5 cut(s) 356, 608, 757, 956, 1009
Hpy188III TCNNGA 5 cut(s) 195, 233, 470, 524, 660
Hpy8I GTNNAC 2 cut(s) 265, 547
Hpy99I CGWCG 2 cut(s) 608, 708
HpyAV CCTTC 1 cut(s) 710
HpyCH4III ACNGT 3 cut(s) 448, 604, 768
HpyCH4IV ACGT 4 cut(s) 130, 407, 532, 808
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 93, 119, 757, 831
HpySE526I ACGT 4 cut(s) 130, 407, 532, 808
Hsp92II CATG 7 cut(s) 272, 374, 486, 498, 598, 1003, 1117
HspAI GCGC 1 cut(s) 749
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 5 cut(s) 167, 271, 674, 841, 982
LmnI GCTCC 2 cut(s) 38, 1109
LpnPI CCDG 7 cut(s) 97, 542, 553, 628, 655, 918, 1057
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 3 cut(s) 125, 448, 665
MaeI CTAG 2 cut(s) 119, 965
MaeII ACGT 4 cut(s) 130, 407, 532, 808
MaeIII GTNAC 1 cut(s) 451
MalI GATC 5 cut(s) 169, 273, 676, 843, 984
MboI GATC 5 cut(s) 167, 271, 674, 841, 982
MboII GAAGA 4 cut(s) 138, 257, 980, 992
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 2 cut(s) 762, 1007
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 9 cut(s) 56, 182, 212, 221, 322, 350, 882, 948, 1101
MluNI TGGCCA 1 cut(s) 593
MmeI TCCRAC 2 cut(s) 586, 796
MnlI CCTC 5 cut(s) 102, 153, 161, 409, 922
Mox20I TGGCCA 1 cut(s) 593
MscI TGGCCA 1 cut(s) 593
MseI TTAA 2 cut(s) 881, 1067
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 593
MspI CCGG 2 cut(s) 84, 540
MspR9I CCNGG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 390
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 5 cut(s) 59, 93, 119, 757, 831
NciI CCSGG 1 cut(s) 540
NdeII GATC 5 cut(s) 167, 271, 674, 841, 982
NlaIII CATG 7 cut(s) 272, 374, 486, 498, 598, 1003, 1117
NlaIV GGNNCC 3 cut(s) 770, 933, 1111
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 97
PciI ACATGT 1 cut(s) 999
PctI GAATGC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 163, 708, 1040
PkrI GCNGC 3 cut(s) 781, 805, 1093
Ple19I CGATCG 1 cut(s) 844
PmaCI CACGTG 1 cut(s) 809
PmlI CACGTG 1 cut(s) 809
Ppu21I YACGTR 2 cut(s) 408, 809
PpuMI RGGWCCY 1 cut(s) 931
PscI ACATGT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 931
PspCI CACGTG 1 cut(s) 809
PspN4I GGNNCC 3 cut(s) 770, 933, 1111
PspPI GGNCC 1 cut(s) 931
PspPPI RGGWCCY 1 cut(s) 931
PspXI VCTCGAGB 1 cut(s) 97
PsuI RGATCY 1 cut(s) 982
PvuI CGATCG 1 cut(s) 844
RsaI GTAC 5 cut(s) 445, 531, 629, 1029, 1059
RsaNI GTAC 5 cut(s) 444, 530, 628, 1028, 1058
RseI CAYNNNNRTG 1 cut(s) 540
SaqAI TTAA 2 cut(s) 881, 1067
SatI GCNGC 3 cut(s) 780, 804, 1092
Sau3AI GATC 5 cut(s) 167, 271, 674, 841, 982
Sau96I GGNCC 1 cut(s) 931
ScrFI CCNGG 1 cut(s) 540
SduI GDGCHC 2 cut(s) 762, 1007
SfaNI GCATC 3 cut(s) 125, 448, 665
Sfr274I CTCGAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 931
SlaI CTCGAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 97, 647
SmoI CTYRAG 2 cut(s) 97, 647
Sse9I AATT 9 cut(s) 56, 182, 212, 221, 322, 350, 882, 948, 1101
SsiI CCGC 8 cut(s) 36, 179, 187, 411, 691, 780, 804, 838
SspMI CTAG 2 cut(s) 119, 965
StyD4I CCNGG 1 cut(s) 538
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 448, 604, 768
TaiI ACGT 4 cut(s) 133, 410, 535, 811
TaqI TCGA 6 cut(s) 98, 166, 194, 346, 659, 703
TasI AATT 9 cut(s) 56, 182, 212, 221, 322, 350, 882, 948, 1101
TatI WGTACW 1 cut(s) 1027
TauI GCSGC 2 cut(s) 782, 806
TfiI GAWTC 3 cut(s) 163, 708, 1040
Tru1I TTAA 2 cut(s) 881, 1067
Tru9I TTAA 2 cut(s) 881, 1067
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 1091
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 611, 993, 1130
TspGWI ACGGA 2 cut(s) 345, 844
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 2 cut(s) 56, 322
XceI RCATGY 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 97
XspI CTAG 2 cut(s) 119, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.