RchiOBHm_Chr5g0053111

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000266
Physical Location & Seq
Reverse (-)
55373283 .. 55373747
465 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33041

Sequence Viewer

Length: 465 bp
ATGGCCGGACCAAGCAGGTGCCATCTTTTGGTGATTTTTCTCTTGCAGGTGACATCAAATGCTTTTGCAACCCCAATACTGGAGGGGCCAGCAAATGTTAAAGACTGTGAAAGACAGTTCACTGAAAAGTGCGGGATCGAAATAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGCCACGATACCTTCCTCAACACGTCCCCTGTGGCACGTCATCCTAGTGCAAACAAAGCTCAAACTTTGGCAAAGGGTGAACAAATTTGGACGGAGTGCGTTGCTATCGACAATTCAGACAAACACGAGACCAAGCCTGTAAAGGAATGCTTGGAAAAGTTCCCCCCTAAGTGCGGAGAGGAAATAGAGAAAAGCATTTATCAAGGTACGGTTGTGACTGATGCTTGTTGTCGTGATCTTATCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

154

Amino Acids

16.94

Weight (kDa)

5.56

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 36 - 106 7.1e-12 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 6, 37
Acc36I ACCTGC 2 cut(s) 6, 37
AccB1I GGYRCC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 2 cut(s) 132, 390
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 28, 79, 389
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 2 cut(s) 240, 254
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 143
AoxI GGCC 2 cut(s) 3, 86
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 8, 86
AsuHPI GGTGA 3 cut(s) 43, 61, 305
AvaII GGWCC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanI GGYRCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 341
BccI CCATC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 2 cut(s) 6, 37
BglII AGATCT 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 8
BmgBI CACGTC 2 cut(s) 240, 254
BmgT120I GGNCC 2 cut(s) 8, 86
BmiI GGNNCC 2 cut(s) 20, 87
BmsI GCATC 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 79, 389
Bse1I ACTGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 28, 79, 389
BseNI ACTGG 1 cut(s) 84
BshFI GGCC 2 cut(s) 5, 88
BshNI GGYRCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 28, 79, 389
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 5, 88
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 3 cut(s) 135, 193, 451
BspACI CCGC 2 cut(s) 132, 390
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 2 cut(s) 20, 87
BspMI ACCTGC 2 cut(s) 6, 37
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 84
BssMI GATC 3 cut(s) 135, 193, 451
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 107, 117, 427
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 3 cut(s) 138, 196, 454
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 135, 193, 451
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 5, 88
BtrI CACGTC 2 cut(s) 240, 254
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 2 cut(s) 6, 37
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 8, 86
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 5, 88, 275, 352
CviKI_1 RGCY 4 cut(s) 5, 88, 275, 352
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 384
DpnI GATC 3 cut(s) 137, 195, 453
DpnII GATC 3 cut(s) 135, 193, 451
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 8
FaeI CATG 1 cut(s) 219
FaiI YATR 2 cut(s) 217, 463
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 215
FauI CCCGC 1 cut(s) 125
FokI GGATG 1 cut(s) 243
FspBI CTAG 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 1 cut(s) 6
Hin1II CATG 1 cut(s) 219
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 43, 61, 305
Hpy166II GTNNAC 3 cut(s) 120, 212, 296
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 191, 449
Hpy8I GTNNAC 3 cut(s) 120, 212, 296
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 107, 117, 427
HpyCH4IV ACGT 2 cut(s) 239, 253
HpyCH4V TGCA 3 cut(s) 46, 68, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 2 cut(s) 239, 253
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 3 cut(s) 135, 193, 451
LpnPI CCDG 6 cut(s) 19, 32, 65, 102, 258, 366
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 239, 253
MaeIII GTNAC 2 cut(s) 49, 430
MalI GATC 3 cut(s) 137, 195, 453
MboI GATC 3 cut(s) 135, 193, 451
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 300, 328
MnlI CCTC 3 cut(s) 76, 242, 388
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 3 cut(s) 135, 193, 451
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 2 cut(s) 20, 87
NmuCI GTSAC 2 cut(s) 49, 430
PaqCI CACCTGC 2 cut(s) 6, 37
PctI GAATGC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 20, 87
PspPI GGNCC 2 cut(s) 8, 86
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 3 cut(s) 135, 193, 451
Sau96I GGNCC 2 cut(s) 8, 86
SetI ASST 7 cut(s) 20, 51, 230, 242, 256, 277, 424
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 2 cut(s) 300, 328
SsiI CCGC 2 cut(s) 132, 390
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 107, 117, 427
TaiI ACGT 2 cut(s) 242, 256
TaqI TCGA 3 cut(s) 138, 190, 324
TasI AATT 2 cut(s) 300, 328
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 49, 430
Tsp45I GTSAC 2 cut(s) 49, 430
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 300
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.