Rroxscaffold_1G00028890

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000266
Physical Location & Seq
Reverse (-)
37100451 .. 37102354
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028890.1

Sequence Viewer

Length: 717 bp
ATGTTAAAGACTCGTGCAAGACAGTTCACCGAAAAGTGCGGGATCGAAGTAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGCCACGATACCTTCCTCAACACGTCCCTTGCGGCACTTCATCCTAGTGCGGACAAAGCTCAAACTTTGGCAAAGGGCGAAAAAATTTGGACGGAGTGCGTTGCCATCGACAATTCGTACAAACACGAGACCAAGTCCGTAAAGGAATGCTTGGAAAAGTTGCCCCCTACGTGCGGAGAGGAAATAGAGAAAAGCATTTATCAAGGTACGGTTGTGATCGATGCTTGTTGTCGTGATCTTGTCTCGTGGGGAAAATCATGCCACGATATCATCGCAGAGCGAAATCACGATGTACGTCATCCCGGTGTCAACAAAGCACAGGCTTTGGCAAGTAGCGAAAAAGTTTGGAATCTATGTGCCGCGATCTCACGTTCACCTCGCTTCTTCTCCATCGAATTAGAAAAATTAAAGTGGTTACTAGACATGATAAGAAGGAGAAAGAGGCATGTGGAGGATCTGCAGCAGTTGTCGAAAAGAGGCCTCGCCGCCCGTTGTTCCGCCACCGTCACCATCACTCTCCCCACCTTCAACGACCTCTCGCCGCCGATTCCCAACTGTCCAATGCGTCCCTATCACAGTTGCAAAGCACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

238

Amino Acids

26.72

Weight (kDa)

8.73

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 11 - 75 1.6e-10 Prolamin-like
Prolamin_like PF05617 90 - 160 9.7e-09 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 485
AciI CCGC 8 cut(s) 39, 155, 173, 297, 483, 609, 621, 665
AclWI GGATC 2 cut(s) 50, 585
AcsI RAATTY 1 cut(s) 207
AfaI GTAC 3 cut(s) 242, 331, 417
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 67, 652
AjiI CACGTC 1 cut(s) 147
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 245, 370
AlwI GGATC 2 cut(s) 50, 585
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 1 cut(s) 583
ApoI RAATTY 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 19, 489, 622
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BauI CACGAG 3 cut(s) 12, 248, 367
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 236, 521, 641
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 245, 370
BfaI CTAG 2 cut(s) 168, 542
BfmI CTRYAG 1 cut(s) 581
BglII AGATCT 1 cut(s) 100
BisI GCNGC 5 cut(s) 156, 483, 584, 609, 665
BlsI GCNGC 5 cut(s) 157, 484, 585, 610, 666
Bme1390I CCNGG 1 cut(s) 426
BmgBI CACGTC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 342
BseGI GGATG 2 cut(s) 163, 421
BseLI CCNNNNNNNGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 595
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 1 cut(s) 603
BshVI ATCGAT 1 cut(s) 342
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 2 cut(s) 133, 675
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 245, 370
BsmFI GGGAC 2 cut(s) 133, 675
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 603
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 6 cut(s) 42, 100, 339, 358, 486, 577
BspACI CCGC 8 cut(s) 39, 155, 173, 297, 483, 609, 621, 665
BspANI GGCC 1 cut(s) 603
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 485
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 2 cut(s) 50, 585
BspTNI GGTCTC 1 cut(s) 245
BssMI GATC 6 cut(s) 42, 100, 339, 358, 486, 577
BssSI CACGAG 3 cut(s) 12, 248, 367
Bst2BI CACGAG 3 cut(s) 12, 248, 367
Bst4CI ACNGT 5 cut(s) 24, 334, 628, 680, 701
BstBAI YACGTR 1 cut(s) 294
BstF5I GGATG 2 cut(s) 163, 421
BstFNI CGCG 1 cut(s) 485
BstKTI GATC 6 cut(s) 45, 103, 342, 361, 489, 580
BstMAI GTCTC 2 cut(s) 245, 370
BstMBI GATC 6 cut(s) 42, 100, 339, 358, 486, 577
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 581
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 100, 577
BstYI RGATCY 2 cut(s) 100, 577
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 1 cut(s) 603
BsuTUI ATCGAT 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 379
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 163, 421
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 241, 330, 416
CviAII CATG 4 cut(s) 123, 381, 547, 569
CviJI RGCY 3 cut(s) 182, 446, 603
CviKI_1 RGCY 3 cut(s) 182, 446, 603
CviQI GTAC 3 cut(s) 241, 330, 416
DpnI GATC 6 cut(s) 44, 102, 341, 360, 488, 579
DpnII GATC 6 cut(s) 42, 100, 339, 358, 486, 577
EciI GGCGGA 1 cut(s) 610
Eco147I AGGCCT 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 391
EcoRV GATATC 1 cut(s) 391
FaeI CATG 4 cut(s) 126, 384, 550, 572
FaiI YATR 5 cut(s) 124, 382, 478, 548, 570
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 2 cut(s) 133, 675
FatI CATG 4 cut(s) 122, 380, 546, 568
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 156, 483, 584, 609, 665
FokI GGATG 2 cut(s) 150, 408
Fsp4HI GCNGC 5 cut(s) 156, 483, 584, 609, 665
FspBI CTAG 2 cut(s) 168, 542
GluI GCNGC 5 cut(s) 156, 483, 584, 609, 665
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 677
Hin1II CATG 4 cut(s) 126, 384, 550, 572
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 10, 472, 670
HpaII CCGG 1 cut(s) 426
HphI GGTGA 3 cut(s) 19, 489, 622
Hpy166II GTNNAC 4 cut(s) 27, 119, 433, 497
Hpy188III TCNNGA 3 cut(s) 98, 356, 410
Hpy8I GTNNAC 4 cut(s) 27, 119, 433, 497
HpyAV CCTTC 3 cut(s) 145, 549, 658
HpyCH4III ACNGT 5 cut(s) 24, 334, 628, 680, 701
HpyCH4IV ACGT 4 cut(s) 146, 293, 418, 493
HpyCH4V TGCA 3 cut(s) 17, 583, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpySE526I ACGT 4 cut(s) 146, 293, 418, 493
Hsp92II CATG 4 cut(s) 126, 384, 550, 572
Kzo9I GATC 6 cut(s) 42, 100, 339, 358, 486, 577
LpnPI CCDG 2 cut(s) 428, 439
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 168, 542
MaeII ACGT 4 cut(s) 146, 293, 418, 493
MaeIII GTNAC 2 cut(s) 537, 628
MalI GATC 6 cut(s) 44, 102, 341, 360, 488, 579
MboI GATC 6 cut(s) 42, 100, 339, 358, 486, 577
MboII GAAGA 1 cut(s) 499
MflI RGATCY 2 cut(s) 100, 577
MluCI AATT 4 cut(s) 207, 235, 518, 527
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 8 cut(s) 149, 295, 510, 558, 568, 593, 614, 668
MseI TTAA 2 cut(s) 5, 530
MslI CAYNNNNRTG 2 cut(s) 168, 426
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 275
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 426
NdeII GATC 6 cut(s) 42, 100, 339, 358, 486, 577
NlaIII CATG 4 cut(s) 126, 384, 550, 572
NmuCI GTSAC 1 cut(s) 628
NspI RCATGY 1 cut(s) 572
PceI AGGCCT 1 cut(s) 603
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 472, 670
PflFI GACNNNGTC 1 cut(s) 256
PkrI GCNGC 5 cut(s) 157, 484, 585, 610, 666
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 294
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 2 cut(s) 100, 577
PsyI GACNNNGTC 1 cut(s) 256
RsaI GTAC 3 cut(s) 242, 331, 417
RsaNI GTAC 3 cut(s) 241, 330, 416
RseI CAYNNNNRTG 2 cut(s) 168, 426
SaqAI TTAA 2 cut(s) 5, 530
SatI GCNGC 5 cut(s) 156, 483, 584, 609, 665
Sau3AI GATC 6 cut(s) 42, 100, 339, 358, 486, 577
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 426
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 581
SmiMI CAYNNNNRTG 2 cut(s) 168, 426
Sse9I AATT 4 cut(s) 207, 235, 518, 527
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 8 cut(s) 39, 155, 173, 297, 483, 609, 621, 665
SspMI CTAG 2 cut(s) 168, 542
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 5 cut(s) 24, 334, 628, 680, 701
TaiI ACGT 4 cut(s) 149, 296, 421, 496
TaqI TCGA 6 cut(s) 45, 97, 231, 342, 516, 593
TasI AATT 4 cut(s) 207, 235, 518, 527
TauI GCSGC 4 cut(s) 158, 485, 611, 667
TfiI GAWTC 2 cut(s) 472, 670
Tru1I TTAA 2 cut(s) 5, 530
Tru9I TTAA 2 cut(s) 5, 530
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 1 cut(s) 583
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 2 cut(s) 230, 250
Tth111I GACNNNGTC 1 cut(s) 256
XapI RAATTY 1 cut(s) 207
XceI RCATGY 1 cut(s) 572
XspI CTAG 2 cut(s) 168, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.