Prupe.2G072700_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000266
Physical Location & Seq
Forward (+)
11002216 .. 11002584
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G072700.1

Sequence Viewer

Length: 369 bp
ATGCCCACACCAAATATGTATCCATTGTTGGTCATTTTGCTTTTGGCGAGTCCATATGGAATGATTTTTACAAGTTTTGGAATTTCAATATCAGAGGCATCAAATTCGAAGACCTTGGAAGAATGTGAAAACAATATCTCCATTCAATGCGCTCGGGAAATTGGCAAAAGTATTTTTGAAAGTGGAACTGTAACTGAAGGTTGTTGTTATGCTCTTGTCTATTTAGGCAAAACATGTCATGATCTATTCTTTCATTATTCTCTTGCGTACAAATCAAATGTCAACAAATCTAAAGCTTTGGCAAAGAGTACACAAGTTTGGAACCAATGTAATAAAATTACAATTTCCCCTACCTCTTTTGCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

123

Amino Acids

13.48

Weight (kDa)

7.57

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 81, 103
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 2 cut(s) 269, 310
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 3 cut(s) 87, 146, 179
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 153
ApoI RAATTY 2 cut(s) 81, 103
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AspLEI GCGC 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciVI GTATCC 1 cut(s) 30
BfuI GTATCC 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 323
BmsI GCATC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
BseDI CCNNGG 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 153
Bsp119I TTCGAA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 241
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 107
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 116
BsuI GTATCC 1 cut(s) 30
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 268, 309
CviAII CATG 2 cut(s) 234, 239
CviJI RGCY 1 cut(s) 296
CviKI_1 RGCY 1 cut(s) 296
CviQI GTAC 2 cut(s) 268, 309
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 237, 242
FaiI YATR 6 cut(s) 17, 55, 57, 210, 235, 240
FatI CATG 2 cut(s) 233, 238
FauNDI CATATG 1 cut(s) 55
GlaI GCGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 237, 242
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 283, 311
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 155, 239
Hpy8I GTNNAC 2 cut(s) 283, 311
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 190
Hsp92II CATG 2 cut(s) 237, 242
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 241
LweI GCATC 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 121, 131
MluCI AATT 5 cut(s) 81, 103, 159, 336, 342
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 2 cut(s) 88, 364
MseI TTAA 1 cut(s) 367
NdeI CATATG 1 cut(s) 55
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 237, 242
NlaIV GGNNCC 1 cut(s) 323
NspI RCATGY 1 cut(s) 237
NspV TTCGAA 1 cut(s) 107
PagI TCATGA 1 cut(s) 238
PciI ACATGT 1 cut(s) 233
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PscI ACATGT 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 323
RsaI GTAC 2 cut(s) 269, 310
RsaNI GTAC 2 cut(s) 268, 309
SaqAI TTAA 1 cut(s) 367
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 58
SetI ASST 4 cut(s) 116, 202, 298, 356
SfaNI GCATC 1 cut(s) 107
SfuI TTCGAA 1 cut(s) 107
Sse9I AATT 5 cut(s) 81, 103, 159, 336, 342
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 107
TasI AATT 5 cut(s) 81, 103, 159, 336, 342
TatI WGTACW 1 cut(s) 308
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 242
XapI RAATTY 2 cut(s) 81, 103
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.