Prupe.6G171000_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000266
Physical Location & Seq
Reverse (-)
17601075 .. 17601514
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G171000.1

Sequence Viewer

Length: 315 bp
ATGATGATTTTGTCAGGACTTGCAACCCTAGCACCTGCCCCATCAAATTTGAAGTTCCTAGAGGAATGCAAATCAAGGCTTCATAATGGGTGTGGAAAAGAAATAGTGATTACGATAATCAAGAAATGGTCTATTAGTGATGGTTGTTGCGCTAAGCTTGTATTAATGGGTAAATCATGCCACATTGCATTAGTGAACAAAGCTCTGTCGGGCCCTCTTGCCAAATTAAACAAGACGGTTGCTTTGACCAAGAGTGCAGAAATTTGGACTCAATTGCCTCAGAAGTTAAGAAGCTACACTGGGGTCAGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

105

Amino Acids

11.29

Weight (kDa)

9.76

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AcsI RAATTY 2 cut(s) 46, 261
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 3 cut(s) 157, 203, 294
AluI AGCT 3 cut(s) 157, 203, 294
AoxI GGCC 1 cut(s) 211
ApaI GGGCCC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 46, 261
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
AseI ATTAAT 1 cut(s) 164
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 211, 212
BaeGI GKGCMC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 215
BccI CCATC 2 cut(s) 49, 134
BfaI CTAG 2 cut(s) 29, 59
BfuAI ACCTGC 1 cut(s) 43
BlpI GCTNAGC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 211, 212
BmiI GGNNCC 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 213
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1720I GCTNAGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 153, 279
BstHHI GCGC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 211, 212
CviAII CATG 1 cut(s) 177
CviJI RGCY 5 cut(s) 79, 157, 203, 213, 294
CviKI_1 RGCY 5 cut(s) 79, 157, 203, 213, 294
DdeI CTNAG 2 cut(s) 153, 279
Eco24I GRGCYC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 1 cut(s) 180
FaiI YATR 2 cut(s) 84, 178
FatI CATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 215
FspBI CTAG 2 cut(s) 29, 59
GlaI GCGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 213
HhaI GCGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 180
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 282, 308
Hpy188III TCNNGA 2 cut(s) 15, 121
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 23, 69, 188, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 153, 279
Hsp92II CATG 1 cut(s) 180
HspAI GCGC 1 cut(s) 150
LpnPI CCDG 2 cut(s) 48, 285
MaeI CTAG 2 cut(s) 29, 59
MfeI CAATTG 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 4 cut(s) 46, 224, 261, 272
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 3 cut(s) 55, 225, 288
MseI TTAA 4 cut(s) 164, 227, 287, 313
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 213
PaqCI CACCTGC 1 cut(s) 43
PctI GAATGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 213
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 211, 212
SaqAI TTAA 4 cut(s) 164, 227, 287, 313
Sau96I GGNCC 2 cut(s) 211, 212
SchI GAGTC 1 cut(s) 262
SduI GDGCHC 1 cut(s) 215
SetI ASST 4 cut(s) 37, 159, 205, 296
Sse9I AATT 4 cut(s) 46, 224, 261, 272
SspMI CTAG 2 cut(s) 29, 59
TaaI ACNGT 1 cut(s) 238
TasI AATT 4 cut(s) 46, 224, 261, 272
Tru1I TTAA 4 cut(s) 164, 227, 287, 313
Tru9I TTAA 4 cut(s) 164, 227, 287, 313
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 1 cut(s) 304
VspI ATTAAT 1 cut(s) 164
XapI RAATTY 2 cut(s) 46, 261
XspI CTAG 2 cut(s) 29, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.