Prupe.6G084400_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000266
Physical Location & Seq
Reverse (-)
5688889 .. 5689449
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G084400.1

Sequence Viewer

Length: 561 bp
TTCGGAATTTCAACCTCAGAGGCATCACATATCTCCATTGACTGCGCTTGGGAAGTTGGTGGAAGTATTTTTGAAGATGGGAGTGTAACAGGTGATTGTTGCAATGAGCTTGTGTCTGTAGGCAAAACTTATCATGATCTATTCTTCAACTCAGCTCTTGCGTTTAAATCCAATGCAGACAAATCTGAAGCTTTGGCGAAGAGTGCACAACTTTGGAATAGATGTGTTGGAATTGCGGTCTCCCGCACATCTTCTATCCCAATTCCAACCTCAAAGGCTTCAAAATCAAAAACAATGGATGAATGTAAAAAACAGATATCCATTAAGTGTGCTCGGGAAGTTGGTGAAACTATTTTTAAAGGTGGGAGTGTAGCAGATGGTTGTTGCTATGAGCTTGTGTCTGTAGGCAAAATTTGCCATGATCTATTCTTCAACTCTGCTCTTGAGTCTACACCCAATGTCGACAAATCTAGAGCTTTAGCAAAAAGTACACAAGTTTGGAACCGATGTGTTAAAATTATAATTTCCCCTATCTCTTCTATCTCTGAAACGGAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

187

Amino Acids

19.95

Weight (kDa)

6.35

Isoelectric Point (pI)

21.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AccI GTMKAC 2 cut(s) 449, 462
AciI CCGC 2 cut(s) 236, 244
AcsI RAATTY 2 cut(s) 6, 411
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 490
AgsI TTSAA 5 cut(s) 12, 74, 148, 282, 433
AluBI AGCT 5 cut(s) 109, 155, 191, 394, 476
AluI AGCT 5 cut(s) 109, 155, 191, 394, 476
Alw21I GWGCWC 2 cut(s) 208, 334
Alw26I GTCTC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 204
ApoI RAATTY 2 cut(s) 6, 411
AspLEI GCGC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 104, 356
AvaI CYCGRG 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 208
Bbv12I GWGCWC 2 cut(s) 208, 334
BccI CCATC 2 cut(s) 71, 371
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 2 cut(s) 117, 402
BmeT110I CYCGRG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 503
BmsI GCATC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 464
BsaI GGTCTC 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 109
BseGI GGATG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 30, 165
BseSI GKGCMC 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 208, 334
BsiHKCI CYCGRG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 208, 334
Bsp143I GATC 2 cut(s) 136, 421
BspACI CCGC 2 cut(s) 236, 244
BspCNI CTCAG 2 cut(s) 29, 164
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 109
BssMI GATC 2 cut(s) 136, 421
Bst6I CTCTTC 2 cut(s) 194, 541
BstAPI GCANNNNNTGC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 16, 151
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 139, 424
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 136, 421
BstMWI GCNNNNNNNGC 2 cut(s) 203, 414
BstSFI CTRYAG 2 cut(s) 117, 402
BstSLI GKGCMC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 304
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 489
CviAII CATG 2 cut(s) 134, 419
CviJI RGCY 6 cut(s) 109, 155, 191, 278, 394, 476
CviKI_1 RGCY 6 cut(s) 109, 155, 191, 278, 394, 476
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 2 cut(s) 16, 151
DpnI GATC 2 cut(s) 138, 423
DpnII GATC 2 cut(s) 136, 421
DraI TTTAAA 2 cut(s) 166, 358
Eam1104I CTCTTC 2 cut(s) 194, 541
EarI CTCTTC 2 cut(s) 194, 541
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 333
EcoRV GATATC 1 cut(s) 318
FaeI CATG 2 cut(s) 137, 422
FaiI YATR 5 cut(s) 30, 135, 390, 420, 521
FatI CATG 2 cut(s) 133, 418
FauI CCCGC 1 cut(s) 251
FblI GTMKAC 2 cut(s) 449, 462
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 471
GlaI GCGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 137, 422
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 1 cut(s) 446
HphI GGTGA 2 cut(s) 104, 356
Hpy166II GTNNAC 4 cut(s) 206, 450, 463, 491
Hpy188I TCNGA 4 cut(s) 5, 19, 187, 547
Hpy188III TCNNGA 4 cut(s) 134, 335, 443, 471
Hpy8I GTNNAC 4 cut(s) 206, 450, 463, 491
HpyCH4V TGCA 3 cut(s) 102, 176, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 414
HpyF3I CTNAG 2 cut(s) 16, 151
Hsp92II CATG 2 cut(s) 137, 422
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 136, 421
LpnPI CCDG 1 cut(s) 75
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 138, 423
MboI GATC 2 cut(s) 136, 421
MboII GAAGA 6 cut(s) 86, 136, 211, 243, 421, 528
MhlI GDGCHC 2 cut(s) 208, 334
MluCI AATT 7 cut(s) 6, 231, 261, 411, 516, 522, 556
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 208, 290
MnlI CCTC 3 cut(s) 13, 25, 280
MseI TTAA 5 cut(s) 165, 324, 357, 513, 559
MwoI GCNNNNNNNGC 2 cut(s) 203, 414
NdeII GATC 2 cut(s) 136, 421
NlaIII CATG 2 cut(s) 137, 422
NlaIV GGNNCC 1 cut(s) 503
PagI TCATGA 1 cut(s) 133
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PsiI TTATAA 1 cut(s) 521
PspN4I GGNNCC 1 cut(s) 503
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 5 cut(s) 165, 324, 357, 513, 559
Sau3AI GATC 2 cut(s) 136, 421
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 2 cut(s) 208, 334
SetI ASST 9 cut(s) 17, 94, 111, 157, 193, 272, 364, 396, 478
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 2 cut(s) 117, 402
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 7 cut(s) 6, 231, 261, 411, 516, 522, 556
SsiI CCGC 2 cut(s) 236, 244
SspMI CTAG 1 cut(s) 471
TaqI TCGA 1 cut(s) 462
TasI AATT 7 cut(s) 6, 231, 261, 411, 516, 522, 556
TatI WGTACW 1 cut(s) 488
Tru1I TTAA 5 cut(s) 165, 324, 357, 513, 559
Tru9I TTAA 5 cut(s) 165, 324, 357, 513, 559
TspDTI ATGAA 1 cut(s) 315
VneI GTGCAC 1 cut(s) 204
XapI RAATTY 2 cut(s) 6, 411
XbaI TCTAGA 1 cut(s) 470
XmiI GTMKAC 2 cut(s) 449, 462
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.