Rroxscaffold_1G00000200

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000266
Physical Location & Seq
Reverse (-)
196310 .. 196711
402 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00000200.1

Sequence Viewer

Length: 402 bp
ATGGCCGGACCAAGCAGGTGCCATCTTTTGGTGATTTTTCTCTTGCAGGTGACATTAAATACTGTTGCAACCCCAACACCGGAAGGGCCAGCAAATGTTAAAGACTGTGCAAGACAGTTCACCGAAAAGTGCGGGATCGAAGTAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGCCACGATACCTTCCTCAACACGTCCCTTGCGGCACTTCATCCTAGTGTGGACAAAGCTCAAACTTTGGCAAAGGGCGAAAAAATTTGGACGGAGTGCGTTGCCATCGACAATTCGGACAAACACGAGACCAAGCCCGTAAAGGAATGCTTGGAAAAGTTGCCCCTACGTGCGGAGAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

6.88

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 35 - 106 5.5e-12 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 6, 37
Acc36I ACCTGC 2 cut(s) 6, 37
AccB1I GGYRCC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 3 cut(s) 132, 248, 389
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 300
AfiI CCNNNNNNNGG 3 cut(s) 28, 79, 388
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 143
AoxI GGCC 2 cut(s) 3, 86
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 8, 86
AsuHPI GGTGA 3 cut(s) 43, 61, 112
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 341
BccI CCATC 2 cut(s) 30, 329
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 2 cut(s) 6, 37
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 8, 86
BmiI GGNNCC 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 79, 388
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 28, 79, 388
BshFI GGCC 2 cut(s) 5, 88
BshNI GGYRCC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 6, 80
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 28, 79, 388
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 5, 88
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 135, 193
BspACI CCGC 3 cut(s) 132, 248, 389
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 1 cut(s) 20
BspMI ACCTGC 2 cut(s) 6, 37
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 338
BssMI GATC 2 cut(s) 135, 193
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 64, 107, 117
BstBAI YACGTR 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 90
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 138, 196
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 135, 193
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 5, 88
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 256
BveI ACCTGC 2 cut(s) 6, 37
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 8, 86
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 5, 88, 275, 352
CviKI_1 RGCY 4 cut(s) 5, 88, 275, 352
DpnI GATC 2 cut(s) 137, 195
DpnII GATC 2 cut(s) 135, 193
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 8
FaeI CATG 1 cut(s) 219
FaiI YATR 1 cut(s) 217
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 215
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 261
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 2 cut(s) 6, 80
Hin1II CATG 1 cut(s) 219
HpaII CCGG 2 cut(s) 6, 80
HphI GGTGA 3 cut(s) 43, 61, 112
Hpy166II GTNNAC 3 cut(s) 120, 212, 268
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 3 cut(s) 120, 212, 268
HpyAV CCTTC 2 cut(s) 77, 238
HpyCH4III ACNGT 3 cut(s) 64, 107, 117
HpyCH4IV ACGT 2 cut(s) 239, 385
HpyCH4V TGCA 3 cut(s) 46, 68, 110
HpySE526I ACGT 2 cut(s) 239, 385
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 2 cut(s) 135, 193
LpnPI CCDG 4 cut(s) 19, 32, 93, 102
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 239, 385
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 137, 195
MboI GATC 2 cut(s) 135, 193
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 300, 328
MnlI CCTC 2 cut(s) 242, 387
MseI TTAA 2 cut(s) 56, 99
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 2 cut(s) 6, 80
Mva1269I GAATGC 1 cut(s) 368
NdeII GATC 2 cut(s) 135, 193
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 49
PaqCI CACCTGC 2 cut(s) 6, 37
PctI GAATGC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 8, 86
PsuI RGATCY 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 56, 99
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 135, 193
Sau96I GGNCC 2 cut(s) 8, 86
SetI ASST 6 cut(s) 20, 51, 230, 242, 277, 388
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 2 cut(s) 300, 328
SsiI CCGC 3 cut(s) 132, 248, 389
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 64, 107, 117
TaiI ACGT 2 cut(s) 242, 388
TaqI TCGA 3 cut(s) 138, 190, 324
TasI AATT 2 cut(s) 300, 328
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 56, 99
Tru9I TTAA 2 cut(s) 56, 99
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 300
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.