Prupe.4G143200_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000266
Physical Location & Seq
Reverse (-)
8206712 .. 8207236
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G143200.1

Sequence Viewer

Length: 525 bp
ATGGCCGCACTAAATATGTTCTCGATGTTGGCCATTTTGCTTTTGGCGAGCCCATCAAGAATGATTTTCACAAGTTTCGCAATTCCAACTTTAGAGGAATCTAATTTGAAAACCTTGGATGAATGTAAAAAACATATATCCAATAATTGCGCTCGGGAAGTTGGTGGAAGCATTTTTGAAGGTGGGATTGTAACTGATGGTTGTTGTTATGAACTTGTGTCCGTAGGCAAAACTTGTCATGATCTGTTCTTCAACTCTGTTCTTACCTCCAAACCCATTGTCGACAAATCTAGAGCTTTAGCAGAGAGTACACAAGTTTGGGACAAATGTGTTGAAATTATAGTTTCTCCCGCACCTTCTATCGCAATTCCAACCTCAAAGGCATTAAATTCAGAGACCTTGGTTGAATGCAAACATATCTCCATTAATTGCGCTTGGCAAGTAGGCGGAAATATTTTTGAAGGTGGAACGGTAACAAGTGATTGTTGCGATGATCTTCTATTTGTAGGAAAAAACATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

175

Amino Acids

18.73

Weight (kDa)

4.99

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 282
AciI CCGC 3 cut(s) 6, 351, 447
AcoI YGGCCR 2 cut(s) 3, 30
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 1 cut(s) 310
AgsI TTSAA 6 cut(s) 109, 179, 253, 335, 407, 461
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 2 cut(s) 3, 30
ApoI RAATTY 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 426
AspLEI GCGC 2 cut(s) 152, 434
AvaI CYCGRG 1 cut(s) 153
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 53
BccI CCATC 2 cut(s) 61, 191
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 291
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 114, 399
BseDI CCNNGG 2 cut(s) 114, 399
BseGI GGATG 1 cut(s) 124
BshFI GGCC 2 cut(s) 5, 32
BsiHKCI CYCGRG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 2 cut(s) 5, 32
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 241, 493
BspACI CCGC 3 cut(s) 6, 351, 447
BspANI GGCC 2 cut(s) 5, 32
BspHI TCATGA 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 114, 399
BssMI GATC 2 cut(s) 241, 493
BssT1I CCWWGG 2 cut(s) 114, 399
Bst4CI ACNGT 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 2 cut(s) 152, 434
BstKTI GATC 2 cut(s) 244, 496
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 241, 493
BstNSI RCATGY 1 cut(s) 520
BsuRI GGCC 2 cut(s) 5, 32
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 1 cut(s) 238
CfoI GCGC 2 cut(s) 152, 434
Csp6I GTAC 1 cut(s) 309
CviAII CATG 3 cut(s) 239, 517, 522
CviJI RGCY 4 cut(s) 5, 32, 51, 296
CviKI_1 RGCY 4 cut(s) 5, 32, 51, 296
CviQI GTAC 1 cut(s) 309
DpnI GATC 2 cut(s) 243, 495
DpnII GATC 2 cut(s) 241, 493
EaeI YGGCCR 2 cut(s) 3, 30
EciI GGCGGA 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 114, 399
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 114, 399
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 114, 399
FaeI CATG 3 cut(s) 242, 520, 525
FaiI YATR 9 cut(s) 17, 135, 137, 210, 240, 341, 417, 518, 523
FaqI GGGAC 1 cut(s) 335
FatI CATG 3 cut(s) 238, 516, 521
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 291
GlaI GCGC 2 cut(s) 151, 433
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 5, 32
HhaI GCGC 2 cut(s) 152, 434
Hin1II CATG 3 cut(s) 242, 520, 525
Hin6I GCGC 2 cut(s) 150, 432
HinP1I GCGC 2 cut(s) 150, 432
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 283, 311
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 5 cut(s) 22, 57, 155, 239, 291
Hpy8I GTNNAC 2 cut(s) 283, 311
HpyAV CCTTC 3 cut(s) 173, 366, 455
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 1 cut(s) 411
Hsp92II CATG 3 cut(s) 242, 520, 525
HspAI GCGC 2 cut(s) 150, 432
Kzo9I GATC 2 cut(s) 241, 493
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 190, 472
MalI GATC 2 cut(s) 243, 495
MboI GATC 2 cut(s) 241, 493
MboII GAAGA 2 cut(s) 241, 488
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 7 cut(s) 81, 103, 145, 336, 366, 388, 427
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 110, 395
MnlI CCTC 3 cut(s) 88, 277, 385
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 386, 426
Msp20I TGGCCA 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 413
NdeII GATC 2 cut(s) 241, 493
NlaIII CATG 3 cut(s) 242, 520, 525
NspI RCATGY 1 cut(s) 520
PagI TCATGA 1 cut(s) 238
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 426
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 386, 426
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 241, 493
SduI GDGCHC 1 cut(s) 53
SetI ASST 8 cut(s) 116, 184, 269, 298, 358, 377, 401, 466
Sse9I AATT 7 cut(s) 81, 103, 145, 336, 366, 388, 427
SsiI CCGC 3 cut(s) 6, 351, 447
SspI AATATT 1 cut(s) 454
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 2 cut(s) 114, 399
TaaI ACNGT 1 cut(s) 472
TaqI TCGA 2 cut(s) 23, 282
TasI AATT 7 cut(s) 81, 103, 145, 336, 366, 388, 427
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 386, 426
Tru9I TTAA 2 cut(s) 386, 426
TspDTI ATGAA 2 cut(s) 135, 225
TspGWI ACGGA 1 cut(s) 211
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 1 cut(s) 388
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.