Rroxscaffold_1G00028850

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000266
Physical Location & Seq
Reverse (-)
37015206 .. 37021333
6128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028850.1

Sequence Viewer

Length: 681 bp
ATGGAGGCGAGAATGAATACTAAGCTCGGCTATGGTAATCCTTCTCATAGCTTTAGTAATTGGAATTATTGGTTTATAGTGACATTAAATGCTGTTGCAACCCCAACACCGGAGGGGCCAGCAAATGTTAAAGACTGTGCAAGACAGTTCACCGAAAAGTGCGGGATCGAAGTAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGTCACGATACCTTCCTCAACACGTCCCTTGCGGCACTTCATCCTAGTGCGGACAAAGCTCAAATTTTGGCAAAGGGCGAAAAAATTTGGACTGAGTGCGTTGCCATCTACAATTCGGACAAACACGAGACCAAGCCCGTAAAGGAATGCTTGGAAAAGTTGCCCCCTACGTGCGGAGAGGAAATAGAGAAAAGCATTTATCAAGGTACGGTTGTGACTGATGCTTGTTGTCGTGATCTTGTCTCGGGGGAAAATCATGCCACGATATCATCGCAGAGCGAAATCACGATGTACGTCATCCTAGTGTCAACAAAGCACAGGCTTTGGCAAGTAGCGAAAAAGTTTGGAATCTATGTGCCGCGATCTCACGTTCACCTGCTTCTTCTCCATCGAATTAGAAAAATTAAAGTGGTTACTAGACATGATGTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

226

Amino Acids

25.34

Weight (kDa)

8.29

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 45 - 116 1.8e-11 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 630
Acc36I ACCTGC 1 cut(s) 630
AccII CGCG 1 cut(s) 607
AciI CCGC 5 cut(s) 162, 278, 296, 420, 605
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 309, 330
AfaI GTAC 2 cut(s) 454, 539
AfiI CCNNNNNNNGG 2 cut(s) 109, 419
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 270
AluBI AGCT 3 cut(s) 25, 51, 305
AluI AGCT 3 cut(s) 25, 51, 305
Alw26I GTCTC 2 cut(s) 368, 493
AlwI GGATC 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 309, 330
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 142, 611
AvaI CYCGRG 1 cut(s) 490
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BauI CACGAG 1 cut(s) 371
BccI CCATC 2 cut(s) 359, 642
BcoDI GTCTC 2 cut(s) 368, 493
BfaI CTAG 3 cut(s) 291, 548, 663
BfuAI ACCTGC 1 cut(s) 630
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 279, 605
BlsI GCNGC 2 cut(s) 280, 606
BmeT110I CYCGRG 1 cut(s) 490
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 457
BsaAI YACGTR 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 419
BseGI GGATG 2 cut(s) 286, 543
BseLI CCNNNNNNNGG 2 cut(s) 109, 419
BseMII CTCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 607
BshFI GGCC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 109, 419
BsmAI GTCTC 2 cut(s) 368, 493
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 4 cut(s) 165, 223, 481, 608
BspACI CCGC 5 cut(s) 162, 278, 296, 420, 605
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 368
BssMI GATC 4 cut(s) 165, 223, 481, 608
BssSI CACGAG 1 cut(s) 371
Bst2BI CACGAG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 137, 147, 457
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 21, 339
BstF5I GGATG 2 cut(s) 286, 543
BstFNI CGCG 1 cut(s) 607
BstKTI GATC 4 cut(s) 168, 226, 484, 611
BstMAI GTCTC 2 cut(s) 368, 493
BstMBI GATC 4 cut(s) 165, 223, 481, 608
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstUI CGCG 1 cut(s) 607
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 286, 543
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 453, 538
CviAII CATG 3 cut(s) 246, 503, 668
CviJI RGCY 7 cut(s) 25, 30, 51, 118, 305, 382, 568
CviKI_1 RGCY 7 cut(s) 25, 30, 51, 118, 305, 382, 568
CviQI GTAC 2 cut(s) 453, 538
DdeI CTNAG 2 cut(s) 21, 339
DpnI GATC 4 cut(s) 167, 225, 483, 610
DpnII GATC 4 cut(s) 165, 223, 481, 608
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 490
EcoRV GATATC 1 cut(s) 513
FaeI CATG 3 cut(s) 249, 506, 671
FaiI YATR 8 cut(s) 33, 48, 77, 247, 504, 600, 669, 679
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 245, 502, 667
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 279, 605
FokI GGATG 2 cut(s) 273, 530
Fsp4HI GCNGC 2 cut(s) 279, 605
FspBI CTAG 3 cut(s) 291, 548, 663
GluI GCNGC 2 cut(s) 279, 605
HaeIII GGCC 1 cut(s) 118
HapII CCGG 1 cut(s) 110
Hin1II CATG 3 cut(s) 249, 506, 671
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 1 cut(s) 594
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 142, 611
Hpy166II GTNNAC 4 cut(s) 150, 242, 555, 619
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 4 cut(s) 221, 251, 479, 532
Hpy8I GTNNAC 4 cut(s) 150, 242, 555, 619
HpyAV CCTTC 2 cut(s) 51, 268
HpyCH4III ACNGT 3 cut(s) 137, 147, 457
HpyCH4IV ACGT 4 cut(s) 269, 416, 540, 615
HpyCH4V TGCA 2 cut(s) 98, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 21, 339
HpySE526I ACGT 4 cut(s) 269, 416, 540, 615
Hsp92II CATG 3 cut(s) 249, 506, 671
Kzo9I GATC 4 cut(s) 165, 223, 481, 608
LpnPI CCDG 4 cut(s) 123, 132, 550, 635
LweI GCATC 1 cut(s) 457
MaeI CTAG 3 cut(s) 291, 548, 663
MaeII ACGT 4 cut(s) 269, 416, 540, 615
MaeIII GTNAC 4 cut(s) 79, 248, 460, 658
MalI GATC 4 cut(s) 167, 225, 483, 610
MboI GATC 4 cut(s) 165, 223, 481, 608
MboII GAAGA 1 cut(s) 620
MflI RGATCY 1 cut(s) 223
MluCI AATT 7 cut(s) 58, 64, 309, 330, 358, 639, 648
MnlI CCTC 3 cut(s) 106, 272, 418
MseI TTAA 3 cut(s) 86, 129, 651
MslI CAYNNNNRTG 2 cut(s) 291, 548
MspI CCGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 398
MvnI CGCG 1 cut(s) 607
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 4 cut(s) 165, 223, 481, 608
NlaIII CATG 3 cut(s) 249, 506, 671
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 79, 248, 460
PaqCI CACCTGC 1 cut(s) 630
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 594
PkrI GCNGC 2 cut(s) 280, 606
Ppu21I YACGTR 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 454, 539
RsaNI GTAC 2 cut(s) 453, 538
RseI CAYNNNNRTG 2 cut(s) 291, 548
SaqAI TTAA 3 cut(s) 86, 129, 651
SatI GCNGC 2 cut(s) 279, 605
Sau3AI GATC 4 cut(s) 165, 223, 481, 608
Sau96I GGNCC 1 cut(s) 116
SfaNI GCATC 1 cut(s) 457
SmiMI CAYNNNNRTG 2 cut(s) 291, 548
Sse9I AATT 7 cut(s) 58, 64, 309, 330, 358, 639, 648
SsiI CCGC 5 cut(s) 162, 278, 296, 420, 605
SspMI CTAG 3 cut(s) 291, 548, 663
TaaI ACNGT 3 cut(s) 137, 147, 457
TaiI ACGT 4 cut(s) 272, 419, 543, 618
TaqI TCGA 3 cut(s) 168, 220, 637
TasI AATT 7 cut(s) 58, 64, 309, 330, 358, 639, 648
TauI GCSGC 2 cut(s) 281, 607
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 3 cut(s) 86, 129, 651
Tru9I TTAA 3 cut(s) 86, 129, 651
TseFI GTSAC 3 cut(s) 79, 248, 460
Tsp45I GTSAC 3 cut(s) 79, 248, 460
TspDTI ATGAA 2 cut(s) 29, 275
XapI RAATTY 2 cut(s) 309, 330
XspI CTAG 3 cut(s) 291, 548, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.