Rh5DG331800

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000266
Physical Location & Seq
Reverse (-)
43766882 .. 43779100
12219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG331800.1

Sequence Viewer

Length: 699 bp
ATGGCCGGACCACGCAGGTGCCATCTTTTGGTGATTTTTCTCTTGCAGGTGACATTAAATGCTTTTGCAACCCCAACACTGGAGGGGCCAGCAAATGTTAAAGACTGTGAAAGACAGTTCACAGAAAAGTGCGGGATCGAAGTAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGCCACGATACCTTCCTCAACACGTCCCTTGCGGCACGTCATCCTAGTGCAAACAAAGCTCAAACTTTGGCAAAGGGCGAAAAAATTTGGACAGAGTGCGTTGCCATCGACAATTCAGACAAACACGAGACCAAGCCGGTAAAGGAATGCTTGGAAAAGTTCCCCCCTAAGTGCGGAGAGGAAATAGAGAAAAGCGTTTATCAAGACCGAATCCGGCAATGCTGTCGCCCTCTGTCGCTGAGTGGTGGCGCACCGTTTCACTTTGTAAGAACTAGATCGGCGCCAATGTCTGCGGGCTTCCCTACGCTTGGATCAAAAACTCCTGCAAACAGGTCCAACAACGCCCTCTACATGATGTTCTTGTATGACAACTATGGCAACGACACCAGCCTTTGGGCTCTGCCGAAGATTGAGCGAGATGTGTTTTGGGAGAAGATAATATGTAAAGTTCACTTTGGACCACTACTTTCGTCGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

232

Amino Acids

25.94

Weight (kDa)

8.42

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 36 - 106 7e-11 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 6, 37
Acc36I ACCTGC 2 cut(s) 6, 37
AccB1I GGYRCC 2 cut(s) 18, 496
AccB7I CCANNNNNTGG 2 cut(s) 28, 609
AciI CCGC 4 cut(s) 132, 248, 390, 509
AclWI GGATC 2 cut(s) 143, 535
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 497
AfiI CCNNNNNNNGG 5 cut(s) 28, 79, 389, 524, 609
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 2 cut(s) 240, 254
AleI CACNNNNGTG 1 cut(s) 16
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 143, 535
AoxI GGCC 2 cut(s) 3, 86
ApoI RAATTY 1 cut(s) 300
AspLEI GCGC 2 cut(s) 467, 499
AspS9I GGNCC 4 cut(s) 8, 86, 549, 674
AsuHPI GGTGA 2 cut(s) 43, 61
AvaII GGWCC 3 cut(s) 8, 549, 674
BanI GGYRCC 2 cut(s) 18, 496
BanII GRGCYC 1 cut(s) 616
BauI CACGAG 1 cut(s) 341
BccI CCATC 2 cut(s) 30, 329
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 2 cut(s) 261, 489
BfoI RGCGCY 1 cut(s) 500
BfuAI ACCTGC 2 cut(s) 6, 37
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme18I GGWCC 3 cut(s) 8, 549, 674
BmgBI CACGTC 2 cut(s) 240, 254
BmgT120I GGNCC 4 cut(s) 8, 86, 549, 674
BmiI GGNNCC 3 cut(s) 20, 87, 498
BpmI CTGGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 79, 389, 524, 609
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 440
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 5 cut(s) 28, 79, 389, 524, 609
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 84
BshFI GGCC 2 cut(s) 5, 88
BshNI GGYRCC 2 cut(s) 18, 496
BsiSI CCGG 3 cut(s) 6, 353, 430
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 5 cut(s) 28, 79, 389, 524, 609
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 5, 88
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 4 cut(s) 135, 193, 491, 527
BspACI CCGC 4 cut(s) 132, 248, 390, 509
BspANI GGCC 2 cut(s) 5, 88
BspCNI CTCAG 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 20, 87, 498
BspMI ACCTGC 2 cut(s) 6, 37
BspPI GGATC 2 cut(s) 143, 535
BspT107I GGYRCC 2 cut(s) 18, 496
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 352
BssMI GATC 4 cut(s) 135, 193, 491, 527
BssNI GRCGYC 1 cut(s) 497
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 107, 117, 471
BstACI GRCGYC 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 90, 511
BstDEI CTNAG 2 cut(s) 384, 455
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 2 cut(s) 467, 499
BstKTI GATC 4 cut(s) 138, 196, 494, 530
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 4 cut(s) 135, 193, 491, 527
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 5, 88
BtrI CACGTC 2 cut(s) 240, 254
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 2 cut(s) 6, 37
Cac8I GCNNGC 2 cut(s) 90, 511
CfoI GCGC 2 cut(s) 467, 499
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 4 cut(s) 8, 86, 549, 674
CviAII CATG 2 cut(s) 216, 568
CviJI RGCY 7 cut(s) 5, 88, 275, 352, 513, 606, 614
CviKI_1 RGCY 7 cut(s) 5, 88, 275, 352, 513, 606, 614
DdeI CTNAG 2 cut(s) 384, 455
DinI GGCGCC 1 cut(s) 498
DpnI GATC 4 cut(s) 137, 195, 493, 529
DpnII GATC 4 cut(s) 135, 193, 491, 527
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 616
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 3 cut(s) 8, 549, 674
EcoT38I GRGCYC 1 cut(s) 616
EgeI GGCGCC 1 cut(s) 498
EheI GGCGCC 1 cut(s) 498
FaeI CATG 2 cut(s) 219, 571
FaiI YATR 5 cut(s) 217, 569, 582, 591, 658
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 215, 567
FauI CCCGC 2 cut(s) 125, 502
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 261, 489
GlaI GCGC 2 cut(s) 466, 498
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 3 cut(s) 6, 353, 430
HhaI GCGC 2 cut(s) 467, 499
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 2 cut(s) 219, 571
Hin6I GCGC 2 cut(s) 465, 497
HinP1I GCGC 2 cut(s) 465, 497
HinfI GANTC 1 cut(s) 426
HpaII CCGG 3 cut(s) 6, 353, 430
HphI GGTGA 2 cut(s) 43, 61
Hpy166II GTNNAC 3 cut(s) 120, 212, 667
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 191, 419
Hpy8I GTNNAC 3 cut(s) 120, 212, 667
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 107, 117, 471
HpyCH4IV ACGT 2 cut(s) 239, 253
HpyCH4V TGCA 4 cut(s) 46, 68, 266, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 384, 455
HpySE526I ACGT 2 cut(s) 239, 253
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 2 cut(s) 219, 571
HspAI GCGC 2 cut(s) 465, 497
KasI GGCGCC 1 cut(s) 496
Kzo9I GATC 4 cut(s) 135, 193, 491, 527
LpnPI CCDG 9 cut(s) 19, 32, 65, 102, 366, 443, 532, 552, 616
MaeI CTAG 2 cut(s) 261, 489
MaeII ACGT 2 cut(s) 239, 253
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 137, 195, 493, 529
MboI GATC 4 cut(s) 135, 193, 491, 527
MboII GAAGA 2 cut(s) 634, 661
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 2 cut(s) 300, 328
Mly113I GGCGCC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 5 cut(s) 76, 242, 388, 456, 572
MseI TTAA 3 cut(s) 56, 99, 697
MslI CAYNNNNRTG 2 cut(s) 16, 261
MspI CCGG 3 cut(s) 6, 353, 430
Mva1269I GAATGC 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 272
NarI GGCGCC 1 cut(s) 497
NdeII GATC 4 cut(s) 135, 193, 491, 527
NlaIII CATG 2 cut(s) 219, 571
NlaIV GGNNCC 3 cut(s) 20, 87, 498
NmuCI GTSAC 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 16
PaqCI CACCTGC 2 cut(s) 6, 37
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 426
PflMI CCANNNNNTGG 2 cut(s) 28, 609
PkrI GCNGC 1 cut(s) 250
PluTI GGCGCC 1 cut(s) 500
PspN4I GGNNCC 3 cut(s) 20, 87, 498
PspPI GGNCC 4 cut(s) 8, 86, 549, 674
PsuI RGATCY 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 16, 261
SaqAI TTAA 3 cut(s) 56, 99, 697
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 4 cut(s) 135, 193, 491, 527
Sau96I GGNCC 4 cut(s) 8, 86, 549, 674
SduI GDGCHC 1 cut(s) 616
SetI ASST 7 cut(s) 20, 51, 230, 242, 256, 277, 551
SfoI GGCGCC 1 cut(s) 498
SinI GGWCC 3 cut(s) 8, 549, 674
SmiMI CAYNNNNRTG 2 cut(s) 16, 261
Sse9I AATT 2 cut(s) 300, 328
SsiI CCGC 4 cut(s) 132, 248, 390, 509
SspDI GGCGCC 1 cut(s) 496
SspMI CTAG 2 cut(s) 261, 489
TaaI ACNGT 3 cut(s) 107, 117, 471
TaiI ACGT 2 cut(s) 242, 256
TaqI TCGA 3 cut(s) 138, 190, 324
TaqII GACCGA 1 cut(s) 438
TasI AATT 2 cut(s) 300, 328
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 3 cut(s) 56, 99, 697
Tru9I TTAA 3 cut(s) 56, 99, 697
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 2 cut(s) 28, 609
VpaK11BI GGWCC 3 cut(s) 8, 549, 674
XapI RAATTY 1 cut(s) 300
XspI CTAG 2 cut(s) 261, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.