Prupe.6G171400_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000266
Physical Location & Seq
Reverse (-)
17624239 .. 17624625
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G171400.1

Sequence Viewer

Length: 387 bp
ATGGCAAGGTTCATTGGTTATCAAACTTCAGCAATCTTGATTTTTGTGATTGCAACAATGATGATTTTGCCAGGACTTGCAACCCTAGCACCCTCCCCATCAAATTTTATGTTCCTACAGGAATGCAAATCAAGGCTTCATGCTAGGTGTGGAAAAGAAATATTCATTACAATAATTAAGGAATGGTCTATTAGTGATAGGTGTTGTATGGAGTTTGTAACCATGGGTCAATCATGCCATTTTGCATTAGTGAACAAAGCTCTTTCGGGCCCTCTTTCCAAATTAAACAAGTCGGATGCTTTGACCAAGAGTGTAGAAATTTGGAATCAATGTTTTGAGCTTTCACAATTTCTATCTCCGGCAACTTCCCCTTCTTCAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

129

Amino Acids

14.23

Weight (kDa)

7.59

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 103, 318
AcuI CTGAAG 2 cut(s) 12, 360
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 260, 340
AluI AGCT 2 cut(s) 260, 340
AoxI GGCC 1 cut(s) 268
ApaI GGGCCC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 103, 318
AspS9I GGNCC 2 cut(s) 268, 269
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 72
BfaI CTAG 2 cut(s) 86, 144
BfmI CTRYAG 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 268, 269
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 272
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 359
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 270
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 222
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 268, 269
CviAII CATG 3 cut(s) 140, 223, 234
CviJI RGCY 4 cut(s) 136, 260, 270, 340
CviKI_1 RGCY 4 cut(s) 136, 260, 270, 340
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 12, 360
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 143, 226, 237
FaiI YATR 5 cut(s) 110, 141, 209, 224, 235
FatI CATG 3 cut(s) 139, 222, 233
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 272
FspBI CTAG 2 cut(s) 86, 144
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 359
Hin1II CATG 3 cut(s) 143, 226, 237
HinfI GANTC 1 cut(s) 325
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 295, 379
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 53, 80, 126, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 143, 226, 237
LpnPI CCDG 4 cut(s) 57, 84, 104, 372
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 86, 144
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 5 cut(s) 103, 174, 281, 318, 347
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 2 cut(s) 103, 282
MseI TTAA 2 cut(s) 177, 284
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 3 cut(s) 143, 226, 237
NlaIV GGNNCC 1 cut(s) 270
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 268, 269
SaqAI TTAA 2 cut(s) 177, 284
Sau96I GGNCC 2 cut(s) 268, 269
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 11, 149, 203, 262, 342
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 116
Sse9I AATT 5 cut(s) 103, 174, 281, 318, 347
SspI AATATT 1 cut(s) 162
SspMI CTAG 2 cut(s) 86, 144
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 222
TasI AATT 5 cut(s) 103, 174, 281, 318, 347
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 177, 284
Tru9I TTAA 2 cut(s) 177, 284
TspDTI ATGAA 2 cut(s) 128, 154
XapI RAATTY 2 cut(s) 103, 318
XspI CTAG 2 cut(s) 86, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.