Rmu_sc0001966.1_g000053

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001966.1
OG0000266
Physical Location & Seq
Forward (+)
260460 .. 265485
5026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001966.1_g000053.1.cds

Sequence Viewer

Length: 981 bp
atgcctcaatcctctcttcaaggcatcaataatatccttggaaatcagcttaaccctcacactttccaggaggaaactagaggagtagaaagagcggatcccccagggttccaaactgtgacgtttttggtagtcaaggtggcggcggtgctatcggtgacggtgacggtgacggtgacggtgacggtgacggtgacggtgtcggtgtcggtggggattgggagggagctgaggtttcaacgacattgtcggggtctacgtttctttgactcttcctgtgctttagattccgccggagaatggaggaggaatgattgttatggtgaggagaaggagctcgagtttggggaggaggagctcgagtctgggttgagaattgaggtcaagactgaggtgacattaaatgcttttgcaaccccaacactggaggggccagcaaatgttaaagactgtgaaagacagttcacaaacaagtgcgggatcgaagtacgaaacggcattttcaataatggatttttgagtgatgattgttgtcgagatcttgtaaagttgggtaaaccatgccacgataccttcctcaacacttcccttcccagtgcagacaaagctcaaactttggcaaagggcgaaaaaatttggacggagtgcgttgccatcgacaattcagacaaactcgagaccaagcccgtaaaggaatgcttggaaaagttcccccctacgtgcggagaaaagtgcgggattgaagtacgaaacggcattttcaataatggatttttgagtgatgattgttgtcgagatcttgtaaagttgggtaaaccatgcgacgataccttcctcaacacttcccttcccagtgcagacaaagctcaaactttggcaaagggcgaaaaaatttggacggagtgcattgccatcgacaattcagacaaacacgagaccaaacccgtaaagaaatgcttggaaaagttcccccctacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

326

Amino Acids

36.01

Weight (kDa)

5.21

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 256
AciI CCGC 7 cut(s) 95, 143, 146, 291, 477, 723, 735
AclWI GGATC 3 cut(s) 92, 105, 488
AcsI RAATTY 2 cut(s) 633, 891
AfaI GTAC 2 cut(s) 489, 747
AfiI CCNNNNNNNGG 3 cut(s) 300, 424, 722
AgsI TTSAA 5 cut(s) 20, 239, 505, 743, 763
AjnI CCWGG 2 cut(s) 66, 103
AluBI AGCT 6 cut(s) 49, 229, 337, 358, 608, 866
AluI AGCT 6 cut(s) 49, 229, 337, 358, 608, 866
Alw21I GWGCWC 2 cut(s) 339, 360
Alw26I GTCTC 2 cut(s) 671, 929
AlwI GGATC 3 cut(s) 92, 105, 488
Ama87I CYCGRG 3 cut(s) 338, 359, 674
AoxI GGCC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 633, 891
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 9 cut(s) 169, 175, 181, 187, 193, 199, 205, 335, 406
AvaI CYCGRG 3 cut(s) 338, 359, 674
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 2 cut(s) 339, 360
BauI CACGAG 1 cut(s) 932
Bbv12I GWGCWC 2 cut(s) 339, 360
BbvCI CCTCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 662, 920
BceAI ACGGC 2 cut(s) 511, 769
BcgI CGANNNNNNTGC 2 cut(s) 895, 929
BciT130I CCWGG 2 cut(s) 68, 105
BcoDI GTCTC 2 cut(s) 671, 929
BfaI CTAG 1 cut(s) 78
BglII AGATCT 2 cut(s) 538, 796
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 68, 105
BmeT110I CYCGRG 3 cut(s) 338, 359, 674
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 3 cut(s) 99, 110, 432
BmrFI CCNGG 2 cut(s) 68, 105
BmrI ACTGGG 2 cut(s) 588, 846
BmsI GCATC 1 cut(s) 33
BmuI ACTGGG 2 cut(s) 588, 846
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 720, 978
BsaI GGTCTC 2 cut(s) 671, 929
BsaJI CCNNGG 3 cut(s) 37, 103, 104
BsaXI ACNNNNNCTCC 6 cut(s) 218, 248, 326, 347, 356, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 424, 722
Bse1I ACTGG 3 cut(s) 429, 594, 852
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 2 cut(s) 68, 105
BseDI CCNNGG 3 cut(s) 37, 103, 104
BseLI CCNNNNNNNGG 3 cut(s) 300, 424, 722
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 2 cut(s) 221, 381
BseNI ACTGG 3 cut(s) 429, 594, 852
BseRI GAGGAG 5 cut(s) 96, 319, 341, 365, 368
BsgI GTGCAG 2 cut(s) 618, 876
BshFI GGCC 1 cut(s) 433
BsiHKAI GWGCWC 2 cut(s) 339, 360
BsiHKCI CYCGRG 3 cut(s) 338, 359, 674
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 300, 424, 722
BsmAI GTCTC 2 cut(s) 671, 929
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 1 cut(s) 433
Bso31I GGTCTC 2 cut(s) 671, 929
BsoBI CYCGRG 3 cut(s) 338, 359, 674
Bsp1286I GDGCHC 2 cut(s) 339, 360
Bsp143I GATC 4 cut(s) 97, 480, 538, 796
BspACI CCGC 7 cut(s) 95, 143, 146, 291, 477, 723, 735
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 2 cut(s) 222, 382
BspLI GGNNCC 3 cut(s) 99, 110, 432
BspPI GGATC 3 cut(s) 92, 105, 488
BspTNI GGTCTC 2 cut(s) 671, 929
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 3 cut(s) 429, 594, 852
BssECI CCNNGG 3 cut(s) 37, 103, 104
BssMI GATC 4 cut(s) 97, 480, 538, 796
BssSI CACGAG 1 cut(s) 932
BssT1I CCWWGG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 932
Bst2UI CCWGG 2 cut(s) 68, 105
Bst6I CTCTTC 2 cut(s) 21, 277
BstBAI YACGTR 2 cut(s) 720, 978
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 230, 390
BstKTI GATC 4 cut(s) 100, 483, 541, 799
BstMAI GTCTC 2 cut(s) 671, 929
BstMBI GATC 4 cut(s) 97, 480, 538, 796
BstMWI GCNNNNNNNGC 2 cut(s) 605, 863
BstNI CCWGG 2 cut(s) 68, 105
BstSCI CCNGG 2 cut(s) 66, 103
BstX2I RGATCY 3 cut(s) 97, 538, 796
BstYI RGATCY 3 cut(s) 97, 538, 796
BsuRI GGCC 1 cut(s) 433
BtsIMutI CAGTG 3 cut(s) 422, 601, 859
Cac8I GCNNGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 488, 746
CviAII CATG 2 cut(s) 561, 819
CviJI RGCY 8 cut(s) 49, 229, 337, 358, 433, 608, 685, 866
CviKI_1 RGCY 8 cut(s) 49, 229, 337, 358, 433, 608, 685, 866
CviQI GTAC 2 cut(s) 488, 746
DdeI CTNAG 2 cut(s) 230, 390
DpnI GATC 4 cut(s) 99, 482, 540, 798
DpnII GATC 4 cut(s) 97, 480, 538, 796
Eam1104I CTCTTC 2 cut(s) 21, 277
EarI CTCTTC 2 cut(s) 21, 277
EciI GGCGGA 1 cut(s) 280
Ecl136II GAGCTC 2 cut(s) 337, 358
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 2 cut(s) 339, 360
Eco31I GGTCTC 2 cut(s) 671, 929
Eco53kI GAGCTC 2 cut(s) 337, 358
Eco88I CYCGRG 3 cut(s) 338, 359, 674
EcoICRI GAGCTC 2 cut(s) 337, 358
EcoRII CCWGG 2 cut(s) 66, 103
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 2 cut(s) 339, 360
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 564, 822
FaiI YATR 3 cut(s) 321, 562, 820
FalI AAGNNNNNCTT 4 cut(s) 683, 715, 941, 973
FatI CATG 2 cut(s) 560, 818
FauI CCCGC 2 cut(s) 470, 728
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 144
FriOI GRGCYC 2 cut(s) 339, 360
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 1 cut(s) 433
HapII CCGG 1 cut(s) 294
Hin1II CATG 2 cut(s) 564, 822
HinfI GANTC 3 cut(s) 269, 287, 362
HpaII CCGG 1 cut(s) 294
HphI GGTGA 9 cut(s) 169, 175, 181, 187, 193, 199, 205, 335, 406
Hpy166II GTNNAC 4 cut(s) 257, 465, 557, 815
Hpy188I TCNGA 2 cut(s) 667, 925
Hpy188III TCNNGA 4 cut(s) 385, 536, 676, 794
Hpy8I GTNNAC 4 cut(s) 257, 465, 557, 815
Hpy99I CGWCG 1 cut(s) 827
HpyAV CCTTC 5 cut(s) 325, 583, 599, 841, 857
HpyCH4IV ACGT 4 cut(s) 122, 259, 719, 977
HpyCH4V TGCA 4 cut(s) 413, 599, 857, 906
HpyF10VI GCNNNNNNNGC 2 cut(s) 605, 863
HpyF3I CTNAG 2 cut(s) 230, 390
HpySE526I ACGT 4 cut(s) 122, 259, 719, 977
Hsp92II CATG 2 cut(s) 564, 822
Kzo9I GATC 4 cut(s) 97, 480, 538, 796
LmnI GCTCC 3 cut(s) 226, 334, 355
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 78
MaeII ACGT 4 cut(s) 122, 259, 719, 977
MaeIII GTNAC 9 cut(s) 118, 157, 163, 169, 175, 181, 187, 193, 394
MalI GATC 4 cut(s) 99, 482, 540, 798
MbiI CCGCTC 1 cut(s) 95
MboI GATC 4 cut(s) 97, 480, 538, 796
MboII GAAGA 2 cut(s) 8, 264
MflI RGATCY 3 cut(s) 97, 538, 796
MhlI GDGCHC 2 cut(s) 339, 360
MluCI AATT 5 cut(s) 375, 633, 661, 891, 919
MlyI GAGTC 2 cut(s) 263, 371
MseI TTAA 3 cut(s) 51, 401, 444
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 68, 105
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 2 cut(s) 68, 105
MwoI GCNNNNNNNGC 2 cut(s) 605, 863
NdeII GATC 4 cut(s) 97, 480, 538, 796
NlaIII CATG 2 cut(s) 564, 822
NlaIV GGNNCC 3 cut(s) 99, 110, 432
NmuCI GTSAC 9 cut(s) 118, 157, 163, 169, 175, 181, 187, 193, 394
PaeR7I CTCGAG 3 cut(s) 338, 359, 674
PasI CCCWGGG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 2 cut(s) 199, 246
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 263, 370
PpsI GAGTC 2 cut(s) 263, 370
Ppu21I YACGTR 2 cut(s) 720, 978
Psp124BI GAGCTC 2 cut(s) 339, 360
Psp6I CCWGG 2 cut(s) 66, 103
PspGI CCWGG 2 cut(s) 66, 103
PspN4I GGNNCC 3 cut(s) 99, 110, 432
PspPI GGNCC 1 cut(s) 431
PspXI VCTCGAGB 2 cut(s) 338, 359
PsuI RGATCY 3 cut(s) 97, 538, 796
PsyI GACNNNGTC 2 cut(s) 199, 246
RsaI GTAC 2 cut(s) 489, 747
RsaNI GTAC 2 cut(s) 488, 746
SacI GAGCTC 2 cut(s) 339, 360
SaqAI TTAA 3 cut(s) 51, 401, 444
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 97, 480, 538, 796
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 2 cut(s) 263, 371
ScrFI CCNGG 2 cut(s) 68, 105
SduI GDGCHC 2 cut(s) 339, 360
SfaNI GCATC 1 cut(s) 33
Sfr274I CTCGAG 3 cut(s) 338, 359, 674
SlaI CTCGAG 3 cut(s) 338, 359, 674
SmlI CTYRAG 3 cut(s) 338, 359, 674
SmoI CTYRAG 3 cut(s) 338, 359, 674
Sse9I AATT 5 cut(s) 375, 633, 661, 891, 919
SsiI CCGC 7 cut(s) 95, 143, 146, 291, 477, 723, 735
SspMI CTAG 1 cut(s) 78
SstI GAGCTC 2 cut(s) 339, 360
StyD4I CCNGG 2 cut(s) 66, 103
StyI CCWWGG 1 cut(s) 37
TaiI ACGT 4 cut(s) 125, 262, 722, 980
TaqI TCGA 8 cut(s) 339, 360, 483, 535, 657, 675, 793, 915
TasI AATT 5 cut(s) 375, 633, 661, 891, 919
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 51, 401, 444
Tru9I TTAA 3 cut(s) 51, 401, 444
TscAI CASTG 3 cut(s) 429, 601, 859
TseFI GTSAC 9 cut(s) 118, 157, 163, 169, 175, 181, 187, 193, 394
Tsp45I GTSAC 9 cut(s) 118, 157, 163, 169, 175, 181, 187, 193, 394
TspGWI ACGGA 2 cut(s) 656, 914
TspRI CASTG 3 cut(s) 429, 601, 859
Tth111I GACNNNGTC 2 cut(s) 199, 246
XapI RAATTY 2 cut(s) 633, 891
XhoI CTCGAG 3 cut(s) 338, 359, 674
XmiI GTMKAC 1 cut(s) 256
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.