Rh5DG367400

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000266
Physical Location & Seq
Forward (+)
54783213 .. 54824359
41147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG367400.1

Sequence Viewer

Length: 732 bp
ATGGCCGGACCAAGCAGGTGCCATCTTTTGGTGATTTTTCTCTTGCAGGTGACATCAAATGCTTTTGCAACCCCAACACTGGAGGGGCCAGCAAATCTTAAAGACTGTGAAAGACAGTTCACTGAAAAGTGCGGGATCGAAGTAGGAAACAGCATTTTCAATAATGGATTTTTGAGTGATGATTGTTGTCGAGATCTTGTAAAGTTGGGTAAACCATGCCACGATACCTTCCTCAACACGTCCCTTGTGGCACTTCATCCTAGTGCAAACAAAGCTCAAACTTTGGCAAAGGGCGAACAAATTTGGACGGAGTGCGTTGCCATCGACAATTCAGACAAACACGAGACCAAGCCCGTAAAGGAATGCTTGGAAAAGTTCCCCCCTAAGTGCGGAGAGGAAATAGAGAAAAGCATTTATCAAGGTACGGTTGTGACTGATGCTTGTTGTCGTGATCTTGTCTCATGGGGAAAATCATGCCACGATATCATCGCAGAGCGAAATCACGATGTGACATCAAATGCTTTTGCAACCCCAACACTGGAGGGGCCAGCAAATCTTAAAGACTGTGAAAGACAGTTCACTGAAAAGTGCGGGATCGAACGGGACCCACTGGAACCACCACGACGTGACCGGTCAAGCTGGCCCGGCCCCGGCGTGGACATATTCACAGAGGAGCATGCCTCTCCAACATCGGAATTGAATAGGACTCAACGTCCTCCAGCGCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

243

Amino Acids

26.87

Weight (kDa)

5.32

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 36 - 106 6.3e-11 Prolamin-like
Prolamin_like PF05617 121 - 165 1.1e-07 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 6, 37
Acc36I ACCTGC 2 cut(s) 6, 37
AccB1I GGYRCC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 3 cut(s) 132, 390, 591
AclWI GGATC 2 cut(s) 143, 602
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 300
AdeI CACNNNGTG 2 cut(s) 508, 626
AfaI GTAC 1 cut(s) 424
AfeI AGCGCT 1 cut(s) 723
AfiI CCNNNNNNNGG 6 cut(s) 28, 79, 389, 538, 650, 655
AflIII ACRYGT 1 cut(s) 237
AgeI ACCGGT 1 cut(s) 630
AgsI TTSAA 2 cut(s) 160, 700
AhdI GACNNNNNGTC 1 cut(s) 711
AjiI CACGTC 2 cut(s) 240, 626
AluBI AGCT 2 cut(s) 275, 639
AluI AGCT 2 cut(s) 275, 639
Alw26I GTCTC 2 cut(s) 338, 463
AlwI GGATC 2 cut(s) 143, 602
Aor51HI AGCGCT 1 cut(s) 723
AoxI GGCC 5 cut(s) 3, 86, 545, 641, 646
ApoI RAATTY 1 cut(s) 300
AsiGI ACCGGT 1 cut(s) 630
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 6 cut(s) 8, 86, 545, 604, 642, 647
AsuC2I CCSGG 2 cut(s) 645, 651
AsuHPI GGTGA 2 cut(s) 43, 61
AvaII GGWCC 2 cut(s) 8, 604
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanI GGYRCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 341
BccI CCATC 2 cut(s) 30, 329
BcnI CCSGG 2 cut(s) 645, 651
BcoDI GTCTC 2 cut(s) 338, 463
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 725
BfuAI ACCTGC 2 cut(s) 6, 37
BglII AGATCT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 645, 651
Bme18I GGWCC 2 cut(s) 8, 604
BmeRI GACNNNNNGTC 1 cut(s) 711
BmgBI CACGTC 2 cut(s) 240, 626
BmgT120I GGNCC 6 cut(s) 8, 86, 545, 604, 642, 647
BmiI GGNNCC 7 cut(s) 20, 87, 546, 605, 606, 615, 649
BmrFI CCNGG 2 cut(s) 645, 651
BmsI GCATC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BpmI CTGGAG 3 cut(s) 101, 560, 702
BpuMI CCSGG 2 cut(s) 645, 651
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 79, 389, 538, 650, 655
Bse118I RCCGGY 1 cut(s) 630
Bse1I ACTGG 3 cut(s) 84, 543, 615
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 6 cut(s) 28, 79, 389, 538, 650, 655
BseNI ACTGG 3 cut(s) 84, 543, 615
BseRI GAGGAG 1 cut(s) 686
BshFI GGCC 5 cut(s) 5, 88, 547, 643, 648
BshNI GGYRCC 1 cut(s) 18
BshTI ACCGGT 1 cut(s) 630
BsiSI CCGG 4 cut(s) 6, 631, 645, 651
BslFI GGGAC 2 cut(s) 226, 617
BslI CCNNNNNNNGG 6 cut(s) 28, 79, 389, 538, 650, 655
BsmAI GTCTC 2 cut(s) 338, 463
BsmFI GGGAC 2 cut(s) 226, 617
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 5 cut(s) 5, 88, 547, 643, 648
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 4 cut(s) 135, 193, 451, 594
BspACI CCGC 3 cut(s) 132, 390, 591
BspANI GGCC 5 cut(s) 5, 88, 547, 643, 648
BspLI GGNNCC 7 cut(s) 20, 87, 546, 605, 606, 615, 649
BspMI ACCTGC 2 cut(s) 6, 37
BspPI GGATC 2 cut(s) 143, 602
BspT107I GGYRCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 630
BsrI ACTGG 3 cut(s) 84, 543, 615
BssAI RCCGGY 1 cut(s) 630
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 4 cut(s) 135, 193, 451, 594
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 5 cut(s) 107, 117, 427, 566, 576
BstC8I GCNNGC 4 cut(s) 90, 549, 641, 678
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 4 cut(s) 138, 196, 454, 597
BstMAI GTCTC 2 cut(s) 338, 463
BstMBI GATC 4 cut(s) 135, 193, 451, 594
BstMWI GCNNNNNNNGC 2 cut(s) 272, 645
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 643, 649
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 5 cut(s) 5, 88, 547, 643, 648
BtgZI GCGATG 1 cut(s) 472
BtrI CACGTC 2 cut(s) 240, 626
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 5 cut(s) 77, 120, 536, 579, 608
BveI ACCTGC 2 cut(s) 6, 37
Cac8I GCNNGC 4 cut(s) 90, 549, 641, 678
CfoI GCGC 1 cut(s) 724
Cfr10I RCCGGY 1 cut(s) 630
Cfr13I GGNCC 6 cut(s) 8, 86, 545, 604, 642, 647
Csp6I GTAC 1 cut(s) 423
CspAI ACCGGT 1 cut(s) 630
CviAII CATG 4 cut(s) 216, 462, 474, 677
CviJI RGCY 8 cut(s) 5, 88, 275, 352, 547, 639, 643, 648
CviKI_1 RGCY 8 cut(s) 5, 88, 275, 352, 547, 639, 643, 648
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 384
DpnI GATC 4 cut(s) 137, 195, 453, 596
DpnII GATC 4 cut(s) 135, 193, 451, 594
DraIII CACNNNGTG 2 cut(s) 508, 626
DriI GACNNNNNGTC 1 cut(s) 711
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 711
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 8, 604
Eco47III AGCGCT 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 604
EcoRV GATATC 1 cut(s) 484
FaeI CATG 4 cut(s) 219, 465, 477, 680
FaiI YATR 7 cut(s) 217, 463, 475, 662, 678, 728, 730
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 2 cut(s) 226, 617
FatI CATG 4 cut(s) 215, 461, 473, 676
FauI CCCGC 2 cut(s) 125, 584
FokI GGATG 1 cut(s) 243
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 723
GsuI CTGGAG 3 cut(s) 101, 560, 702
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 5 cut(s) 5, 88, 547, 643, 648
HapII CCGG 4 cut(s) 6, 631, 645, 651
HhaI GCGC 1 cut(s) 724
Hin1II CATG 4 cut(s) 219, 465, 477, 680
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HinfI GANTC 1 cut(s) 706
HpaII CCGG 4 cut(s) 6, 631, 645, 651
HphI GGTGA 2 cut(s) 43, 61
Hpy166II GTNNAC 4 cut(s) 120, 212, 579, 658
Hpy188I TCNGA 2 cut(s) 334, 694
Hpy188III TCNNGA 3 cut(s) 191, 449, 503
Hpy8I GTNNAC 4 cut(s) 120, 212, 579, 658
Hpy99I CGWCG 1 cut(s) 627
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 5 cut(s) 107, 117, 427, 566, 576
HpyCH4IV ACGT 3 cut(s) 239, 625, 712
HpyCH4V TGCA 4 cut(s) 46, 68, 266, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 645
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 3 cut(s) 239, 625, 712
Hsp92II CATG 4 cut(s) 219, 465, 477, 680
HspAI GCGC 1 cut(s) 722
KflI GGGWCCC 1 cut(s) 604
Kzo9I GATC 4 cut(s) 135, 193, 451, 594
LmnI GCTCC 1 cut(s) 673
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 261
MaeII ACGT 3 cut(s) 239, 625, 712
MaeIII GTNAC 4 cut(s) 49, 430, 508, 626
MalI GATC 4 cut(s) 137, 195, 453, 596
MboI GATC 4 cut(s) 135, 193, 451, 594
MflI RGATCY 1 cut(s) 193
MluCI AATT 3 cut(s) 300, 328, 695
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 710
MnlI CCTC 7 cut(s) 76, 242, 388, 535, 664, 691, 726
MseI TTAA 2 cut(s) 99, 558
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 4 cut(s) 6, 631, 645, 651
MspR9I CCNGG 2 cut(s) 645, 651
Mva1269I GAATGC 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 272, 645
NciI CCSGG 2 cut(s) 645, 651
NdeII GATC 4 cut(s) 135, 193, 451, 594
NlaIII CATG 4 cut(s) 219, 465, 477, 680
NlaIV GGNNCC 7 cut(s) 20, 87, 546, 605, 606, 615, 649
NmuCI GTSAC 4 cut(s) 49, 430, 508, 626
NspI RCATGY 1 cut(s) 680
PaeI GCATGC 1 cut(s) 680
PaqCI CACCTGC 2 cut(s) 6, 37
PctI GAATGC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 630
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PpuMI RGGWCCY 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 604
PspN4I GGNNCC 7 cut(s) 20, 87, 546, 605, 606, 615, 649
PspPI GGNCC 6 cut(s) 8, 86, 545, 604, 642, 647
PspPPI RGGWCCY 1 cut(s) 604
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 99, 558
Sau3AI GATC 4 cut(s) 135, 193, 451, 594
Sau96I GGNCC 6 cut(s) 8, 86, 545, 604, 642, 647
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 645, 651
SetI ASST 9 cut(s) 20, 51, 230, 242, 277, 424, 628, 641, 715
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 2 cut(s) 8, 604
SmiMI CAYNNNNRTG 1 cut(s) 261
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 300, 328, 695
SsiI CCGC 3 cut(s) 132, 390, 591
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 643, 649
TaaI ACNGT 5 cut(s) 107, 117, 427, 566, 576
TaiI ACGT 3 cut(s) 242, 628, 715
TaqI TCGA 4 cut(s) 138, 190, 324, 597
TasI AATT 3 cut(s) 300, 328, 695
Tru1I TTAA 2 cut(s) 99, 558
Tru9I TTAA 2 cut(s) 99, 558
TscAI CASTG 5 cut(s) 84, 127, 543, 586, 615
TseFI GTSAC 4 cut(s) 49, 430, 508, 626
Tsp45I GTSAC 4 cut(s) 49, 430, 508, 626
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 5 cut(s) 84, 127, 543, 586, 615
Van91I CCANNNNNTGG 1 cut(s) 28
VpaK11BI GGWCC 2 cut(s) 8, 604
XapI RAATTY 1 cut(s) 300
XceI RCATGY 1 cut(s) 680
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.