Prupe.2G086700_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000266
Physical Location & Seq
Reverse (-)
13727779 .. 13728588
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G086700.1

Sequence Viewer

Length: 810 bp
ATGGCCGCACTAAATATGTACCCAATGTTGGTCATTTTGCTGTTGGCGAGCACATCAAGAATGATTTTCACAACTTTCGCAATTTCAACTTTTGAGACATCTAATTCGAAAATCTTGGATGAATGTAAAAAACATATCTCCATTAACTGCACTCGGGAAGTTGGTGAAAGTATTTTCGAAAATGGGACTGTAACAGATGACTGTTGCCATAAGCTTGTGTCTGTAGGCAAAAATTGTCATGCTATATTCTTCAACTCTGCTCTTGCATCTATACCCAATGTCGATAAATCTAGAGCTTTGGCAAAGAGTACACAAGTTTGGAATCGATGTGTTGGAATTGCACTCTCCCCCACATCTTCTATCACAATTCCAAACTCAAAGGCTTCAAAATCGAAAACAGTTGATGAATGTAAAAAACATATCTCCACTAAGTGCGCTCGAGAGGTTGGTGAAAGTATTTTCGAAAGTGGGAGTGTAACATATGGTTGTTGCTATGAGCTTGTGTTTGCAGGCAAAACTTGCCATGATCTATTCTTTAACTATGGTCTTGCCTCCAAACCCGTTGTTGACAAATCTAGAGCTTTTGTAGAGAGTGCACAAGTTTGGGACCGATGTGTTGAAATTACAATTTCTCCCGCACCTTCTATCACAATTCCAACCCCAAAGGCATTAAATTCGGAGACCTTGGTTGAATGCAAACATATCTCCATTAATTGCGCTTGGGAAGTTGGCGGAAGTATTTTTGAAGGTGGGATGGTAACAGGTGATTGTTGTGATGATCTTCTATTTGAAGGAAAAAACATGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

270

Amino Acids

29.23

Weight (kDa)

6.31

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 6, 636, 732
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 673
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 2 cut(s) 20, 310
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 7 cut(s) 87, 253, 387, 620, 692, 746, 791
AluBI AGCT 4 cut(s) 214, 296, 499, 581
AluI AGCT 4 cut(s) 214, 296, 499, 581
Alw21I GWGCWC 2 cut(s) 53, 598
Alw26I GTCTC 2 cut(s) 89, 674
Alw44I GTGCAC 1 cut(s) 594
Ama87I CYCGRG 2 cut(s) 153, 438
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 594
ApoI RAATTY 1 cut(s) 673
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AseI ATTAAT 1 cut(s) 711
AspLEI GCGC 2 cut(s) 437, 719
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 3 cut(s) 176, 461, 776
AsuII TTCGAA 3 cut(s) 107, 177, 462
AvaI CYCGRG 2 cut(s) 153, 438
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 598
Bbv12I GWGCWC 2 cut(s) 53, 598
BccI CCATC 1 cut(s) 748
BceAI ACGGC 1 cut(s) 790
BcgI CGANNNNNNTGC 2 cut(s) 657, 691
BcoDI GTCTC 2 cut(s) 89, 674
BfaI CTAG 2 cut(s) 291, 576
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 2 cut(s) 153, 438
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 1 cut(s) 608
BmsI GCATC 1 cut(s) 275
Bpu14I TTCGAA 3 cut(s) 107, 177, 462
Bsa29I ATCGAT 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 2 cut(s) 124, 759
BseLI CCNNNNNNNGG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 53, 598
BsiHKCI CYCGRG 2 cut(s) 153, 438
BslFI GGGAC 2 cut(s) 199, 620
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 89, 674
BsmFI GGGAC 2 cut(s) 199, 620
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 674
BsoBI CYCGRG 2 cut(s) 153, 438
Bsp119I TTCGAA 3 cut(s) 107, 177, 462
Bsp1286I GDGCHC 2 cut(s) 53, 598
Bsp143I GATC 2 cut(s) 526, 778
BspACI CCGC 3 cut(s) 6, 636, 732
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 608
BspT104I TTCGAA 3 cut(s) 107, 177, 462
BspTNI GGTCTC 1 cut(s) 674
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 2 cut(s) 526, 778
BssT1I CCWWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 190, 203, 400
BstAPI GCANNNNNTGC 1 cut(s) 519
BstBI TTCGAA 3 cut(s) 107, 177, 462
BstC8I GCNNGC 2 cut(s) 49, 511
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 124, 759
BstHHI GCGC 2 cut(s) 437, 719
BstKTI GATC 2 cut(s) 529, 781
BstMAI GTCTC 2 cut(s) 89, 674
BstMBI GATC 2 cut(s) 526, 778
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 805
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 598
Bsu15I ATCGAT 1 cut(s) 325
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 325
BtsCI GGATG 2 cut(s) 124, 759
Cac8I GCNNGC 2 cut(s) 49, 511
CfoI GCGC 2 cut(s) 437, 719
Cfr13I GGNCC 1 cut(s) 607
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 2 cut(s) 19, 309
CviAII CATG 3 cut(s) 239, 524, 802
CviJI RGCY 6 cut(s) 5, 214, 296, 383, 499, 581
CviKI_1 RGCY 6 cut(s) 5, 214, 296, 383, 499, 581
CviQI GTAC 2 cut(s) 19, 309
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 528, 780
DpnII GATC 2 cut(s) 526, 778
DraIII CACNNNGTG 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 747
Eco130I CCWWGG 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 674
Eco47I GGWCC 1 cut(s) 607
Eco88I CYCGRG 2 cut(s) 153, 438
EcoT14I CCWWGG 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 3 cut(s) 242, 527, 805
FaqI GGGAC 2 cut(s) 199, 620
FatI CATG 3 cut(s) 238, 523, 801
FauI CCCGC 1 cut(s) 643
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 131, 766
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 291, 576
GlaI GCGC 2 cut(s) 436, 718
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 437, 719
Hin1II CATG 3 cut(s) 242, 527, 805
Hin6I GCGC 2 cut(s) 435, 717
HinP1I GCGC 2 cut(s) 435, 717
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 322
HphI GGTGA 3 cut(s) 176, 461, 776
Hpy166II GTNNAC 3 cut(s) 311, 568, 596
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 5 cut(s) 57, 155, 291, 440, 576
Hpy8I GTNNAC 3 cut(s) 311, 568, 596
HpyAV CCTTC 3 cut(s) 651, 740, 785
HpyCH4III ACNGT 3 cut(s) 190, 203, 400
HpyCH4V TGCA 6 cut(s) 150, 266, 341, 509, 596, 696
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 3 cut(s) 242, 527, 805
HspAI GCGC 2 cut(s) 435, 717
Kzo9I GATC 2 cut(s) 526, 778
LpnPI CCDG 2 cut(s) 495, 747
LweI GCATC 1 cut(s) 275
MaeI CTAG 2 cut(s) 291, 576
MaeIII GTNAC 3 cut(s) 190, 475, 757
MalI GATC 2 cut(s) 528, 780
MboI GATC 2 cut(s) 526, 778
MboII GAAGA 3 cut(s) 241, 348, 773
MhlI GDGCHC 2 cut(s) 53, 598
MmeI TCCRAC 2 cut(s) 313, 680
MnlI CCTC 2 cut(s) 436, 562
MseI TTAA 4 cut(s) 144, 537, 671, 711
Mva1269I GAATGC 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 519
NdeI CATATG 1 cut(s) 481
NdeII GATC 2 cut(s) 526, 778
NlaIII CATG 3 cut(s) 242, 527, 805
NlaIV GGNNCC 1 cut(s) 608
NspI RCATGY 1 cut(s) 805
NspV TTCGAA 3 cut(s) 107, 177, 462
PaeR7I CTCGAG 1 cut(s) 438
PctI GAATGC 1 cut(s) 698
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 711
PspN4I GGNNCC 1 cut(s) 608
PspPI GGNCC 1 cut(s) 607
RsaI GTAC 2 cut(s) 20, 310
RsaNI GTAC 2 cut(s) 19, 309
SaqAI TTAA 4 cut(s) 144, 537, 671, 711
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 526, 778
Sau96I GGNCC 1 cut(s) 607
SduI GDGCHC 2 cut(s) 53, 598
SetI ASST 9 cut(s) 216, 298, 447, 501, 583, 643, 686, 751, 766
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 438
SfuI TTCGAA 3 cut(s) 107, 177, 462
SinI GGWCC 1 cut(s) 607
SlaI CTCGAG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SsiI CCGC 3 cut(s) 6, 636, 732
SspMI CTAG 2 cut(s) 291, 576
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 3 cut(s) 190, 203, 400
TaqI TCGA 7 cut(s) 107, 177, 282, 325, 392, 439, 462
TaqII GACCGA 1 cut(s) 624
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 4 cut(s) 144, 537, 671, 711
Tru9I TTAA 4 cut(s) 144, 537, 671, 711
TspDTI ATGAA 2 cut(s) 135, 420
VneI GTGCAC 1 cut(s) 594
VpaK11BI GGWCC 1 cut(s) 607
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 673
XbaI TCTAGA 2 cut(s) 290, 575
XceI RCATGY 1 cut(s) 805
XhoI CTCGAG 1 cut(s) 438
XspI CTAG 2 cut(s) 291, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.