Rmu_sc0000684.1_g000009

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000684.1
OG0000266
Physical Location & Seq
Forward (+)
26903 .. 30564
3662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000684.1_g000009.1.cds

Sequence Viewer

Length: 765 bp
atgatcggtcaaagtttggatgcaaggaaagatctatttcgtccaaaggaagatgacgaagagatgttgggagctgaaattcgatatctaagtgcaataggcgcattattgtacttagcccaatgtactcgaccagacattgcattctcaatggacttgttagatttagctcagcgccaacgcagtgtcactggaatggtgacattaaatgcttttgcaaccccaacactggaggggccaacaaatgttaaagactgtgaaagacagttcaccgaaaagtgtgggatcgaggtaggtaacggcattttcaataatggatttttgagtgatgattgttgtcgagatcttgtaaagttgggtaaaccatgccacgataccttcctcaacacgtcccttgcggaacttcatcccagtgcaaacaaagctcaaactttggcaaagggcgaaaaaatttggacggagtgcgttgccatcgacaattcagacaaactcgagaccaagcccgtaaaggaatgcttggaaaagttcccccctacgtgcggagagcaaatagagaaaagcatttatcaaggtacggttgtgaccgatgcttgttgtcgtgatcttgtctcatggggaaaatcatgccacgatatcattgcagagcgaaatcaagatgtacgtcatcccagcgtcaacaaagcacaggctttggcaagtagcgaaaaagtttggaatctatgtgccgcgatctcacgttcacctgcttcttttccattgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

254

Amino Acids

28.02

Weight (kDa)

5.24

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 751
Acc36I ACCTGC 1 cut(s) 751
AccII CGCG 1 cut(s) 728
AciI CCGC 3 cut(s) 398, 540, 726
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 2 cut(s) 78, 450
AfaI GTAC 4 cut(s) 113, 127, 574, 660
AfiI CCNNNNNNNGG 2 cut(s) 229, 539
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 2 cut(s) 310, 760
AjiI CACGTC 1 cut(s) 390
AluBI AGCT 3 cut(s) 74, 170, 425
AluI AGCT 3 cut(s) 74, 170, 425
Alw26I GTCTC 2 cut(s) 488, 613
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 78, 450
AspLEI GCGC 2 cut(s) 104, 177
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 211, 262, 732
AvaI CYCGRG 1 cut(s) 491
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BcoDI GTCTC 2 cut(s) 488, 613
BfoI RGCGCY 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 751
BglII AGATCT 2 cut(s) 31, 343
BisI GCNGC 1 cut(s) 726
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 727
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 2 cut(s) 10, 577
BmuI ACTGGG 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 539
Bse1I ACTGG 3 cut(s) 196, 234, 411
Bse3DI GCAATG 2 cut(s) 138, 636
BseGI GGATG 3 cut(s) 25, 406, 664
BseLI CCNNNNNNNGG 2 cut(s) 229, 539
BseMI GCAATG 2 cut(s) 138, 636
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 196, 234, 411
BseYI CCCAGC 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 229, 539
BsmAI GTCTC 2 cut(s) 488, 613
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 2 cut(s) 143, 518
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 491
Bsp143I GATC 6 cut(s) 3, 31, 285, 343, 601, 729
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 3 cut(s) 398, 540, 726
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 2 cut(s) 138, 636
BsrI ACTGG 3 cut(s) 196, 234, 411
BssMI GATC 6 cut(s) 3, 31, 285, 343, 601, 729
Bst4CI ACNGT 3 cut(s) 257, 267, 577
Bst6I CTCTTC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 537
BstDEI CTNAG 3 cut(s) 89, 115, 171
BstF5I GGATG 3 cut(s) 25, 406, 664
BstFNI CGCG 1 cut(s) 728
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 104, 177
BstKTI GATC 6 cut(s) 6, 34, 288, 346, 604, 732
BstMAI GTCTC 2 cut(s) 488, 613
BstMBI GATC 6 cut(s) 3, 31, 285, 343, 601, 729
BstMWI GCNNNNNNNGC 2 cut(s) 101, 422
BstUI CGCG 1 cut(s) 728
BstX2I RGATCY 2 cut(s) 31, 343
BstYI RGATCY 2 cut(s) 31, 343
BsuRI GGCC 1 cut(s) 238
BtrI CACGTC 1 cut(s) 390
BtsCI GGATG 3 cut(s) 25, 406, 664
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 4 cut(s) 189, 190, 227, 418
BveI ACCTGC 1 cut(s) 751
CfoI GCGC 2 cut(s) 104, 177
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 1 cut(s) 661
Csp6I GTAC 4 cut(s) 112, 126, 573, 659
CviAII CATG 3 cut(s) 366, 612, 624
CviJI RGCY 7 cut(s) 74, 119, 170, 238, 425, 502, 689
CviKI_1 RGCY 7 cut(s) 74, 119, 170, 238, 425, 502, 689
CviQI GTAC 4 cut(s) 112, 126, 573, 659
DdeI CTNAG 3 cut(s) 89, 115, 171
DpnI GATC 6 cut(s) 5, 33, 287, 345, 603, 731
DpnII GATC 6 cut(s) 3, 31, 285, 343, 601, 729
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 488
Eco32I GATATC 2 cut(s) 86, 634
Eco88I CYCGRG 1 cut(s) 491
EcoRV GATATC 2 cut(s) 86, 634
FaeI CATG 3 cut(s) 369, 615, 627
FaiI YATR 4 cut(s) 367, 613, 625, 721
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 365, 611, 623
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 3 cut(s) 32, 393, 651
Fsp4HI GCNGC 1 cut(s) 726
GlaI GCGC 2 cut(s) 103, 176
GluI GCNGC 1 cut(s) 726
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 238
HgaI GACGC 1 cut(s) 661
HhaI GCGC 2 cut(s) 104, 177
Hin1II CATG 3 cut(s) 369, 615, 627
Hin6I GCGC 2 cut(s) 102, 175
HinP1I GCGC 2 cut(s) 102, 175
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 1 cut(s) 715
HphI GGTGA 3 cut(s) 211, 262, 732
Hpy166II GTNNAC 4 cut(s) 270, 362, 676, 740
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 4 cut(s) 341, 493, 599, 653
Hpy8I GTNNAC 4 cut(s) 270, 362, 676, 740
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 3 cut(s) 257, 267, 577
HpyCH4IV ACGT 4 cut(s) 389, 536, 661, 736
HpyCH4V TGCA 6 cut(s) 23, 95, 143, 218, 416, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 422
HpyF3I CTNAG 3 cut(s) 89, 115, 171
HpySE526I ACGT 4 cut(s) 389, 536, 661, 736
Hsp92II CATG 3 cut(s) 369, 615, 627
HspAI GCGC 2 cut(s) 102, 175
Kzo9I GATC 6 cut(s) 3, 31, 285, 343, 601, 729
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 7 cut(s) 147, 177, 215, 424, 671, 682, 756
LweI GCATC 2 cut(s) 10, 577
MaeII ACGT 4 cut(s) 389, 536, 661, 736
MaeIII GTNAC 4 cut(s) 187, 199, 296, 580
MalI GATC 6 cut(s) 5, 33, 287, 345, 603, 731
MboI GATC 6 cut(s) 3, 31, 285, 343, 601, 729
MboII GAAGA 2 cut(s) 62, 71
MflI RGATCY 2 cut(s) 31, 343
MluCI AATT 4 cut(s) 78, 450, 478, 760
MnlI CCTC 3 cut(s) 226, 283, 392
MseI TTAA 2 cut(s) 206, 249
MslI CAYNNNNRTG 2 cut(s) 194, 411
Mva1269I GAATGC 2 cut(s) 143, 518
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 101, 422
NdeII GATC 6 cut(s) 3, 31, 285, 343, 601, 729
NlaIII CATG 3 cut(s) 369, 615, 627
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 3 cut(s) 187, 199, 580
PaeR7I CTCGAG 1 cut(s) 491
PaqCI CACCTGC 1 cut(s) 751
PctI GAATGC 2 cut(s) 143, 518
PfeI GAWTC 1 cut(s) 715
PkrI GCNGC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 236
PsuI RGATCY 2 cut(s) 31, 343
RsaI GTAC 4 cut(s) 113, 127, 574, 660
RsaNI GTAC 4 cut(s) 112, 126, 573, 659
RseI CAYNNNNRTG 2 cut(s) 194, 411
SaqAI TTAA 2 cut(s) 206, 249
SatI GCNGC 1 cut(s) 726
Sau3AI GATC 6 cut(s) 3, 31, 285, 343, 601, 729
Sau96I GGNCC 1 cut(s) 236
SfaNI GCATC 2 cut(s) 10, 577
Sfr274I CTCGAG 1 cut(s) 491
SlaI CTCGAG 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 194, 411
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 4 cut(s) 78, 450, 478, 760
SsiI CCGC 3 cut(s) 398, 540, 726
TaaI ACNGT 3 cut(s) 257, 267, 577
TaiI ACGT 4 cut(s) 392, 539, 664, 739
TaqI TCGA 6 cut(s) 82, 130, 288, 340, 474, 492
TaqII GACCGA 1 cut(s) 599
TasI AATT 4 cut(s) 78, 450, 478, 760
TatI WGTACW 2 cut(s) 111, 125
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 1 cut(s) 715
Tru1I TTAA 2 cut(s) 206, 249
Tru9I TTAA 2 cut(s) 206, 249
TscAI CASTG 4 cut(s) 190, 196, 234, 418
TseFI GTSAC 3 cut(s) 187, 199, 580
Tsp45I GTSAC 3 cut(s) 187, 199, 580
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 4 cut(s) 190, 196, 234, 418
XapI RAATTY 2 cut(s) 78, 450
XhoI CTCGAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.