Prupe.2G101000_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000266
Physical Location & Seq
Reverse (-)
15693953 .. 15694543
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G101000.1

Sequence Viewer

Length: 591 bp
ATGATTTTTTCATATTTTGGAATTCCGACCTCAGAGGCATTAATTTCAAAGACCTTGGATGAATATAAAAAACATATCTCTATTAAGTGCGTTCGGGAAGTTGGTGCAAGTATTTTCGAAGGCAAGGCTAGTGTAACTGATGCTTGTTGTCATGATCTTGCATCTGTAGGCAAAAATTGCCATGATCTATTCTTCAACTTTGCTCTTGCGCCTAAACCCAATGTCGGCGAATCTAGAGCCTTGGCAAAGAGCGAACAAGTTTGGAGTCCATGTGTTGCAATTACAGTTTCTCCTACATCTTCTATCACAATTCCAACCTCAGAGGTATTAAATTTGAAGATCTTGTATGAATGTATAAAACATATCTCCATTCAGTGCGCAGGGGAAGTTGGTGCCAGTATTTTCGAAGGCGGGGCTAGTGTAACTAATGCTTGTTGCCATGATCTTGTGTATGTAGGCAAAACATGTCATGATCGATTCTTCAACTATGTTCTTGCGTCTAAACCCAATGTTGCCAAATTTAGCGCTTTGGTAAAGAGTGCACAAGTTTGGAGTCGATGTGTTGCAACTTGCAATTACAGTTTCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

197

Amino Acids

21.23

Weight (kDa)

7.95

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 392
AciI CCGC 1 cut(s) 411
AcsI RAATTY 3 cut(s) 21, 331, 518
AfeI AGCGCT 1 cut(s) 526
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 464
AgsI TTSAA 4 cut(s) 48, 196, 337, 484
Alw21I GWGCWC 1 cut(s) 544
Alw44I GTGCAC 1 cut(s) 540
Aor51HI AGCGCT 1 cut(s) 526
ApaLI GTGCAC 1 cut(s) 540
ApoI RAATTY 3 cut(s) 21, 331, 518
AseI ATTAAT 1 cut(s) 41
AspLEI GCGC 3 cut(s) 211, 380, 527
AsuII TTCGAA 2 cut(s) 117, 405
BaeGI GKGCMC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 544
BfaI CTAG 3 cut(s) 129, 234, 417
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 528
BglII AGATCT 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 394
BmsI GCATC 2 cut(s) 130, 170
Bpu14I TTCGAA 2 cut(s) 117, 405
Bsa29I ATCGAT 1 cut(s) 475
BsaJI CCNNGG 2 cut(s) 54, 240
BsaXI ACNNNNNCTCC 6 cut(s) 256, 274, 286, 304, 544, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 396
BseCI ATCGAT 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 54, 240
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 45, 333
BseNI ACTGG 1 cut(s) 396
BseSI GKGCMC 1 cut(s) 544
BshNI GGYRCC 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 117, 405
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 5 cut(s) 154, 184, 339, 442, 472
BspACI CCGC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 44, 332
BspDI ATCGAT 1 cut(s) 475
BspHI TCATGA 2 cut(s) 151, 469
BspLI GGNNCC 1 cut(s) 394
BspT104I TTCGAA 2 cut(s) 117, 405
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 2 cut(s) 54, 240
BssMI GATC 5 cut(s) 154, 184, 339, 442, 472
BssT1I CCWWGG 2 cut(s) 54, 240
Bst4CI ACNGT 2 cut(s) 286, 581
BstAPI GCANNNNNTGC 1 cut(s) 177
BstBI TTCGAA 2 cut(s) 117, 405
BstDEI CTNAG 2 cut(s) 31, 319
BstF5I GGATG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 3 cut(s) 211, 380, 527
BstKTI GATC 5 cut(s) 157, 187, 342, 445, 475
BstMBI GATC 5 cut(s) 154, 184, 339, 442, 472
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 475
BsuTUI ATCGAT 1 cut(s) 475
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 380
CciI TCATGA 2 cut(s) 151, 469
CfoI GCGC 3 cut(s) 211, 380, 527
ClaI ATCGAT 1 cut(s) 475
CseI GACGC 1 cut(s) 486
CviAII CATG 6 cut(s) 152, 182, 270, 440, 465, 470
CviJI RGCY 3 cut(s) 128, 239, 416
CviKI_1 RGCY 3 cut(s) 128, 239, 416
DdeI CTNAG 2 cut(s) 31, 319
DpnI GATC 5 cut(s) 156, 186, 341, 444, 474
DpnII GATC 5 cut(s) 154, 184, 339, 442, 472
Eco130I CCWWGG 2 cut(s) 54, 240
Eco47III AGCGCT 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 54, 240
ErhI CCWWGG 2 cut(s) 54, 240
FaeI CATG 6 cut(s) 155, 185, 273, 443, 468, 473
FatI CATG 6 cut(s) 151, 181, 269, 439, 464, 469
FauI CCCGC 1 cut(s) 404
FokI GGATG 1 cut(s) 71
FspBI CTAG 3 cut(s) 129, 234, 417
FspI TGCGCA 1 cut(s) 379
GlaI GCGC 3 cut(s) 210, 379, 526
HaeII RGCGCY 1 cut(s) 528
HgaI GACGC 1 cut(s) 486
HhaI GCGC 3 cut(s) 211, 380, 527
Hin1II CATG 6 cut(s) 155, 185, 273, 443, 468, 473
Hin6I GCGC 3 cut(s) 209, 378, 525
HinP1I GCGC 3 cut(s) 209, 378, 525
HinfI GANTC 4 cut(s) 230, 265, 477, 553
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 3 cut(s) 27, 34, 322
Hpy188III TCNNGA 4 cut(s) 95, 152, 234, 470
Hpy8I GTNNAC 1 cut(s) 542
HpyAV CCTTC 2 cut(s) 113, 401
HpyCH4III ACNGT 2 cut(s) 286, 581
HpyCH4V TGCA 6 cut(s) 107, 161, 278, 542, 566, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 31, 319
Hsp92II CATG 6 cut(s) 155, 185, 273, 443, 468, 473
HspAI GCGC 3 cut(s) 209, 378, 525
Kzo9I GATC 5 cut(s) 154, 184, 339, 442, 472
LpnPI CCDG 2 cut(s) 366, 409
LweI GCATC 2 cut(s) 130, 170
MaeI CTAG 3 cut(s) 129, 234, 417
MaeIII GTNAC 2 cut(s) 133, 421
MalI GATC 5 cut(s) 156, 186, 341, 444, 474
MboI GATC 5 cut(s) 154, 184, 339, 442, 472
MboII GAAGA 4 cut(s) 184, 291, 349, 472
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 8 cut(s) 21, 42, 175, 279, 309, 331, 518, 574
MlyI GAGTC 2 cut(s) 274, 562
MmeI TCCRAC 2 cut(s) 50, 338
MnlI CCTC 4 cut(s) 28, 40, 316, 328
MseI TTAA 3 cut(s) 41, 84, 329
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 5 cut(s) 154, 184, 339, 442, 472
NlaIII CATG 6 cut(s) 155, 185, 273, 443, 468, 473
NlaIV GGNNCC 1 cut(s) 394
NsbI TGCGCA 1 cut(s) 379
NspI RCATGY 1 cut(s) 468
NspV TTCGAA 2 cut(s) 117, 405
PagI TCATGA 2 cut(s) 151, 469
PciI ACATGT 1 cut(s) 464
PfeI GAWTC 2 cut(s) 230, 477
PleI GAGTC 2 cut(s) 273, 561
PpsI GAGTC 2 cut(s) 273, 561
PscI ACATGT 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 339
SaqAI TTAA 3 cut(s) 41, 84, 329
Sau3AI GATC 5 cut(s) 154, 184, 339, 442, 472
SchI GAGTC 2 cut(s) 274, 562
SduI GDGCHC 1 cut(s) 544
SetI ASST 4 cut(s) 32, 56, 320, 327
SfaNI GCATC 2 cut(s) 130, 170
SfcI CTRYAG 1 cut(s) 165
SfuI TTCGAA 2 cut(s) 117, 405
Sse9I AATT 8 cut(s) 21, 42, 175, 279, 309, 331, 518, 574
SsiI CCGC 1 cut(s) 411
SspMI CTAG 3 cut(s) 129, 234, 417
StyI CCWWGG 2 cut(s) 54, 240
TaaI ACNGT 2 cut(s) 286, 581
TaqI TCGA 4 cut(s) 117, 405, 475, 556
TasI AATT 8 cut(s) 21, 42, 175, 279, 309, 331, 518, 574
TfiI GAWTC 2 cut(s) 230, 477
Tru1I TTAA 3 cut(s) 41, 84, 329
Tru9I TTAA 3 cut(s) 41, 84, 329
TscAI CASTG 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 75, 363
TspRI CASTG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 540
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 3 cut(s) 21, 331, 518
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 1 cut(s) 468
XspI CTAG 3 cut(s) 129, 234, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.