Prupe.6G170500_v2.0.a1

Prolamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000266
Physical Location & Seq
Reverse (-)
17573312 .. 17573861
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G170500.1

Sequence Viewer

Length: 390 bp
ATGGCAAGTTTCACTGGTTATCAAGCTTCTGCAATCCGGATTTTCGTGATTGCAACAATGATGATTTTGTCAGGACTTGCAACCCTAGCACCTGCCCCATCAAATTTGAAGTTCCTAGAGGAATGCAAATCAAGGCTTCATAATGGGTGTGGAAAAGAAATAGTCGTTACCATAATCAAGAAATGGTCTATTAGTGATGGTTGTTGCGCTAAGCTTGTGTTAATGGGTAAATCATGCCACATTGCATTAGTGAACAAAGCTCTGTCGGGCCCTCTTGCCAAATTAAACAAGACGGTTGCTTTGACCAAGAGTGCAGAAATTTGGACTCAATACATTAAGAGGTTCTCACAATATCTTTCTCCTGCAACTTCTCCTTCTTTAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prolamin_like

Protein Analysis

130

Amino Acids

13.97

Weight (kDa)

9.45

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 36
AcsI RAATTY 2 cut(s) 103, 318
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 3 cut(s) 26, 214, 260
AluI AGCT 3 cut(s) 26, 214, 260
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 1 cut(s) 268
ApaI GGGCCC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 103, 318
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 268, 269
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BccI CCATC 2 cut(s) 106, 191
BfaI CTAG 2 cut(s) 86, 116
BfuAI ACCTGC 1 cut(s) 100
BlpI GCTNAGC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 268, 269
BmiI GGNNCC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 36
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 37
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 270
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 268, 269
CviAII CATG 1 cut(s) 234
CviJI RGCY 5 cut(s) 26, 136, 214, 260, 270
CviKI_1 RGCY 5 cut(s) 26, 136, 214, 260, 270
DdeI CTNAG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 237
FaiI YATR 3 cut(s) 141, 173, 235
FatI CATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 272
FspBI CTAG 2 cut(s) 86, 116
GlaI GCGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 237
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 2 cut(s) 24, 212
HinfI GANTC 1 cut(s) 325
HpaII CCGG 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 37, 46, 72, 178
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 7 cut(s) 32, 53, 80, 126, 245, 314, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 237
HspAI GCGC 1 cut(s) 207
Kpn2I TCCGGA 1 cut(s) 36
LpnPI CCDG 4 cut(s) 50, 57, 105, 375
MaeI CTAG 2 cut(s) 86, 116
MaeIII GTNAC 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 3 cut(s) 103, 281, 318
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 3 cut(s) 112, 282, 333
MroI TCCGGA 1 cut(s) 36
MseI TTAA 3 cut(s) 221, 284, 336
MspI CCGG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 100
PctI GAATGC 1 cut(s) 128
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 268, 269
SaqAI TTAA 3 cut(s) 221, 284, 336
Sau96I GGNCC 2 cut(s) 268, 269
SchI GAGTC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 28, 94, 216, 262, 344
Sse9I AATT 3 cut(s) 103, 281, 318
SspMI CTAG 2 cut(s) 86, 116
TaaI ACNGT 1 cut(s) 295
TasI AATT 3 cut(s) 103, 281, 318
Tru1I TTAA 3 cut(s) 221, 284, 336
Tru9I TTAA 3 cut(s) 221, 284, 336
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 19
XapI RAATTY 2 cut(s) 103, 318
XspI CTAG 2 cut(s) 86, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.