Rroxscaffold_6G00392770

presequence protease

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
12461143 .. 12468092
6950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392770.1

Sequence Viewer

Length: 894 bp
ATGCTTGGAAAAGTTCCCCCTAAGTGCGGAGAGGAAATAGAGAAAAGCATCTATCAAGGTGTGGTTGTGACTGATGCTTGTTGTCGTGATCTTGTCTCATGGGGAAAATCATGTCACGATATCATCGCTGAGCGAAATCACGATGTACGTCATCCCAAAGTGTCAACAAAGCACAGGCTTTGGCAAGTAGCGGACAAGTTTGGAATCTATGTGCTGCGGTCTCACGTTCACCTGCTTCTTCTCCATCGAGAACACAGTGTGTTGTGTGGTTCTAGGAAATATCCTTTGAAAGAGCCATTTGTGGAATTGTTTGAAGGGATCTTGAATACTTTTCTTAATGCATTCACCTATCCCGATAAGACTTACTACCCAGTTGCCTCCACAAATTCGAAGTTGGATTTGAGGCTAGGGCAAACTTATGTGCAAATAATCAACTATGATCCGTCAATACTTAGCGCCAAGCAACATCCACCAAGGAGAGCACCCCCGGCGTCGGTCCGTCAAACTAGGTCATCGCTATCGATCATAACTCCATCAACAACAAGGGCTCCGCTAATCTATCAAGCACCTCTAAGCTTTTCTCGCCAAACAAACTCCTCCAAGCGTCGTCCACCATCCACCAAGCTTCATCTCCACCGTCAAGTACGGGTTGACACTGCCAAGCTCCAAGCTTCACTTGACGGAAAATTTTTCATCAAGCCCCACCTTTATGCCGTCGACCGTAGCCCCGCCAATCTCTCCTTGAGTTCTCCCCCTTCCGGTAACGCACACAAGCACAGCCCAACCGTTATGCCAACCTCGGCGGCCCGTCAAGCTTCAACCATTTCAACGTCAATGCTAACCAATAACCAACCAAGTACTGGTCTTCATCATGTTTTCCAGCTCTTACGATGA

Protein Analysis

297

Amino Acids

33.35

Weight (kDa)

10.01

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 6 - 44 4.2e-06 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G45215 AT1G45221 AT1G45223 AT1G57760 AT1G57775 AT1G57777 AT3G30383 AT3G30385 AT3G30387 AT3G44115 AT4G07515 AT4G08025 AT5G34881 AT5G34882 AT5G34883 AT5G34885 AT5G34887 AT5G34905 AT5G34908 AT5G42567 AT5G42955 AT5G42957
prunus_persica Prupe.2G072700_v2.0.a1 Prupe.2G086700_v2.0.a1 Prupe.2G086800_v2.0.a1 Prupe.2G086900_v2.0.a1 Prupe.2G101000_v2.0.a1 Prupe.4G143200_v2.0.a1 Prupe.6G084400_v2.0.a1 Prupe.6G170500_v2.0.a1 Prupe.6G170600_v2.0.a1 Prupe.6G170700_v2.0.a1 Prupe.6G170800_v2.0.a1 Prupe.6G171000_v2.0.a1 Prupe.6G171100_v2.0.a1 Prupe.6G171200_v2.0.a1 Prupe.6G171300_v2.0.a1 Prupe.6G171400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046951 RchiOBHm_Chr5g0046961 RchiOBHm_Chr5g0046971 RchiOBHm_Chr5g0051281 RchiOBHm_Chr5g0051291 RchiOBHm_Chr5g0051301 RchiOBHm_Chr5g0051311 RchiOBHm_Chr5g0051321 RchiOBHm_Chr5g0051331 RchiOBHm_Chr5g0051341 RchiOBHm_Chr5g0051391 RchiOBHm_Chr5g0051401 RchiOBHm_Chr5g0051411 RchiOBHm_Chr5g0051421 RchiOBHm_Chr5g0053111 RchiOBHm_Chr5g0053121 RchiOBHm_Chr5g0053141 RchiOBHm_Chr5g0053151 RchiOBHm_Chr5g0053161 RchiOBHm_Chr5g0053171 RchiOBHm_Chr5g0053181 RchiOBHm_Chr5g0053191 RchiOBHm_Chr5g0053201 RchiOBHm_Chr5g0053211 RchiOBHm_Chr5g0053221 RchiOBHm_Chr5g0053231 RchiOBHm_Chr5g0053241 RchiOBHm_Chr5g0053251 RchiOBHm_Chr5g0053271 RchiOBHm_Chr5g0053391 RchiOBHm_Chr5g0053401 RchiOBHm_Chr5g0053411 RchiOBHm_Chr5g0069271 RchiOBHm_Chr5g0069281 RchiOBHm_Chr5g0069291 RchiOBHm_Chr5g0069301
rosa_multiflora Rmu_sc0000684.1_g000009 Rmu_sc0001966.1_g000053
rosa_roxburghii Rroxscaffold_1G00000190 Rroxscaffold_1G00000200 Rroxscaffold_1G00000210 Rroxscaffold_1G00000220 Rroxscaffold_1G00028850 Rroxscaffold_1G00028890 Rroxscaffold_1G00028910 Rroxscaffold_5G00356310 Rroxscaffold_6G00392770 Rroxscaffold_7G00200870
rosa_samantha Rh5DG331800 Rh5DG331900 Rh5DG332000 Rh5DG332100 Rh5DG332200 Rh5DG362400 Rh5DG362500 Rh5DG362600 Rh5DG362700 Rh5DG362800 Rh5DG362900 Rh5DG363000 Rh5DG363100 Rh5DG363200 Rh5DG363300 Rh5DG363400 Rh5DG363500 Rh5DG363600 Rh5DG363700 Rh5DG363800 Rh5DG365100 Rh5DG365200 Rh5DG365300 Rh5DG365400 Rh5DG365500 Rh5DG365600 Rh5DG365700 Rh5DG365800 Rh5DG365900 Rh5DG366000 Rh5DG366100 Rh5DG366200 Rh5DG366300 Rh5DG366400 Rh5DG366500 Rh5DG366600 Rh5DG366700 Rh5DG366800 Rh5DG366900 Rh5DG367000 Rh5DG367100 Rh5DG367200 Rh5DG367300 Rh5DG367400 Rh5DG367500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 860
AccI GTMKAC 1 cut(s) 717
AciI CCGC 6 cut(s) 27, 191, 217, 551, 729, 803
AclWI GGATC 2 cut(s) 326, 434
AcsI RAATTY 2 cut(s) 385, 686
AcyI GRCGYC 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 3 cut(s) 147, 645, 859
AfiI CCNNNNNNNGG 4 cut(s) 26, 493, 758, 860
AgsI TTSAA 5 cut(s) 289, 314, 325, 819, 828
AluBI AGCT 6 cut(s) 576, 625, 664, 671, 815, 883
AluI AGCT 6 cut(s) 576, 625, 664, 671, 815, 883
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 100, 225
AlwI GGATC 2 cut(s) 326, 434
AoxI GGCC 1 cut(s) 804
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 2 cut(s) 385, 686
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 496, 805
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 221, 337
AsuII TTCGAA 1 cut(s) 389
AvaII GGWCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 550
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 201
BccI CCATC 3 cut(s) 252, 541, 622
BceAI ACGGC 1 cut(s) 698
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 100, 225
BfaI CTAG 3 cut(s) 273, 407, 507
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 2 cut(s) 215, 804
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 2 cut(s) 216, 805
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 496, 805
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 57, 64
BmuI ACTGGG 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 857
Bpu1102I GCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 763
BpuMI CCSGG 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 473, 486, 798
BsaWI WCCGGW 1 cut(s) 758
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 493, 758, 860
Bse1I ACTGG 2 cut(s) 371, 865
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 3 cut(s) 473, 486, 798
BseGI GGATG 3 cut(s) 151, 466, 614
BseLI CCNNNNNNNGG 4 cut(s) 26, 493, 758, 860
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 371, 865
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 721
BshFI GGCC 1 cut(s) 806
BshVI ATCGAT 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 2 cut(s) 488, 759
BslI CCNNNNNNNGG 4 cut(s) 26, 493, 758, 860
BsmAI GTCTC 2 cut(s) 100, 225
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 1 cut(s) 806
Bso31I GGTCTC 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 484, 550
Bsp143I GATC 4 cut(s) 88, 318, 439, 522
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 6 cut(s) 27, 191, 217, 551, 729, 803
BspANI GGCC 1 cut(s) 806
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 549
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 2 cut(s) 326, 434
BspT104I TTCGAA 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 225
BsrI ACTGG 2 cut(s) 371, 865
BssECI CCNNGG 3 cut(s) 473, 486, 798
BssMI GATC 4 cut(s) 88, 318, 439, 522
BssNI GRCGYC 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 473
Bst4CI ACNGT 4 cut(s) 257, 638, 722, 787
BstACI GRCGYC 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 389
BstDEI CTNAG 4 cut(s) 21, 129, 452, 572
BstF5I GGATG 3 cut(s) 151, 466, 614
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 4 cut(s) 91, 321, 442, 525
BstMAI GTCTC 2 cut(s) 100, 225
BstMBI GATC 4 cut(s) 88, 318, 439, 522
BstMCI CGRYCG 1 cut(s) 721
BstMWI GCNNNNNNNGC 3 cut(s) 488, 582, 812
BstSCI CCNGG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 521
BsuRI GGCC 1 cut(s) 806
BsuTUI ATCGAT 1 cut(s) 521
BtgZI GCGATG 2 cut(s) 109, 498
BtsCI GGATG 3 cut(s) 151, 466, 614
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 262, 654
BveI ACCTGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 496, 805
ClaI ATCGAT 1 cut(s) 521
CpoI CGGWCCG 1 cut(s) 496
CseI GACGC 2 cut(s) 480, 593
Csp6I GTAC 3 cut(s) 146, 644, 858
CspI CGGWCCG 1 cut(s) 496
CviAII CATG 3 cut(s) 99, 111, 872
CviQI GTAC 3 cut(s) 146, 644, 858
DdeI CTNAG 4 cut(s) 21, 129, 452, 572
DpnI GATC 4 cut(s) 90, 320, 441, 524
DpnII GATC 4 cut(s) 88, 318, 439, 522
DraIII CACNNNGTG 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 496
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 3 cut(s) 102, 114, 875
FaiI YATR 9 cut(s) 100, 112, 210, 420, 438, 527, 711, 791, 873
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FatI CATG 3 cut(s) 98, 110, 871
FauI CCCGC 1 cut(s) 736
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 2 cut(s) 215, 804
FokI GGATG 3 cut(s) 138, 453, 601
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 2 cut(s) 215, 804
FspBI CTAG 3 cut(s) 273, 407, 507
GlaI GCGC 1 cut(s) 457
GluI GCNGC 2 cut(s) 215, 804
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 1 cut(s) 806
HapII CCGG 2 cut(s) 488, 759
HgaI GACGC 2 cut(s) 480, 593
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 3 cut(s) 102, 114, 875
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 3 cut(s) 165, 652, 718
HindII GTYRAC 3 cut(s) 165, 652, 718
HindIII AAGCTT 4 cut(s) 574, 623, 669, 813
HinfI GANTC 1 cut(s) 204
HpaII CCGG 2 cut(s) 488, 759
HphI GGTGA 2 cut(s) 221, 337
Hpy166II GTNNAC 5 cut(s) 165, 229, 611, 652, 718
Hpy188III TCNNGA 6 cut(s) 86, 116, 140, 248, 322, 353
Hpy8I GTNNAC 5 cut(s) 165, 229, 611, 652, 718
Hpy99I CGWCG 3 cut(s) 496, 609, 719
HpyAV CCTTC 2 cut(s) 308, 765
HpyCH4III ACNGT 4 cut(s) 257, 638, 722, 787
HpyCH4IV ACGT 3 cut(s) 148, 225, 830
HpyCH4V TGCA 2 cut(s) 341, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 582, 812
HpyF3I CTNAG 4 cut(s) 21, 129, 452, 572
HpySE526I ACGT 3 cut(s) 148, 225, 830
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 3 cut(s) 102, 114, 875
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 4 cut(s) 88, 318, 439, 522
LmnI GCTCC 2 cut(s) 553, 669
LpnPI CCDG 6 cut(s) 160, 245, 384, 501, 772, 846
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 2 cut(s) 57, 64
MaeI CTAG 3 cut(s) 273, 407, 507
MaeII ACGT 3 cut(s) 148, 225, 830
MaeIII GTNAC 3 cut(s) 67, 113, 761
MalI GATC 4 cut(s) 90, 320, 441, 524
MboI GATC 4 cut(s) 88, 318, 439, 522
MboII GAAGA 2 cut(s) 230, 857
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 484, 550
MluCI AATT 3 cut(s) 305, 385, 686
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 6 cut(s) 25, 388, 396, 579, 607, 808
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 708
MspI CCGG 2 cut(s) 488, 759
MspR9I CCNGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 488, 582, 812
NciI CCSGG 1 cut(s) 488
NdeII GATC 4 cut(s) 88, 318, 439, 522
NlaIII CATG 3 cut(s) 102, 114, 875
NlaIV GGNNCC 1 cut(s) 549
NmeAIII GCCGAG 1 cut(s) 779
NmuCI GTSAC 2 cut(s) 67, 113
NsiI ATGCAT 1 cut(s) 343
NspV TTCGAA 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 240
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 860
PkrI GCNGC 2 cut(s) 216, 805
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 2 cut(s) 496, 805
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 3 cut(s) 147, 645, 859
RsaNI GTAC 3 cut(s) 146, 644, 858
RseI CAYNNNNRTG 1 cut(s) 708
Rsr2I CGGWCCG 1 cut(s) 496
RsrII CGGWCCG 1 cut(s) 496
SalI GTCGAC 1 cut(s) 716
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 215, 804
Sau3AI GATC 4 cut(s) 88, 318, 439, 522
Sau96I GGNCC 2 cut(s) 496, 805
ScaI AGTACT 1 cut(s) 859
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 2 cut(s) 484, 550
SfaNI GCATC 2 cut(s) 57, 64
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
Sse9I AATT 3 cut(s) 305, 385, 686
SsiI CCGC 6 cut(s) 27, 191, 217, 551, 729, 803
SspMI CTAG 3 cut(s) 273, 407, 507
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 4 cut(s) 257, 638, 722, 787
TaiI ACGT 3 cut(s) 151, 228, 833
TaqI TCGA 4 cut(s) 247, 389, 521, 717
TaqII GACCGA 1 cut(s) 484
TasI AATT 3 cut(s) 305, 385, 686
TatI WGTACW 1 cut(s) 857
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 262, 661
TseFI GTSAC 2 cut(s) 67, 113
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 2 cut(s) 67, 113
TspDTI ATGAA 3 cut(s) 617, 682, 857
TspGWI ACGGA 3 cut(s) 432, 488, 696
TspRI CASTG 2 cut(s) 262, 661
Van91I CCANNNNNTGG 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 2 cut(s) 385, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 857
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 3 cut(s) 273, 407, 507
ZrmI AGTACT 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.