Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

7487225 .. 7490127

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTACTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGTGTTACTGTAACCATGGTGGAACCTATGGATTCTGAGGTTTTTACTGAAAGTCTTAGGGCTTCTCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGATTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCTGAGTACTTGATGCTTGTATCTTGGATCTCTGAAACTCCTGATACAATCCCAGCCAATGCTTCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTTGTCCAGGAGAGGAGTGGGTTTTTCAAAGATAAAAATGTGTGGAAGCTGCCTACTGGTGTTATCAACGAGGGCGAGGATATATGGACTGGAGTAGCTAGGGAAGTGGAAGAAGAAACTGGAATTATTGCAGATTTTGTCGAAGTACTGGCTTTCAGGCAAAGCCACAAAGCCATCTTAAAAAAGAAAACAGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATCTGAGATCTTGCAAGCTAAGTGGATGCCGATCCAAGAGTATGTAGACCAACCATGGAACAAGAAGAACGAGATGTTCAAGTTCATGGCTAACATTTGCCAAAAGAAGTGTGAGGAAGAATACTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAAGAGAGCTTTATCTACTGCAATGCGGATCATGCCAAGCGCCTTAAAGTATCGCGTGACCAAGCCTCTGCTTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

282

Amino Acids

31.88

Weight (kDa)

5.32

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	11 - 89	5.4e-31	Nudix hydrolase domain
NUDIX	PF00293	102 - 232	1.5e-22	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	3 cut(s)	233, 580, 823
AciI	CCGC	3 cut(s)	233, 578, 794
AclWI	GGATC	3 cut(s)	272, 631, 804
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	3 cut(s)	7, 245, 504
AflII	CTTAAG	1 cut(s)	571
AgsI	TTSAA	3 cut(s)	35, 385, 685
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	6 cut(s)	14, 169, 406, 455, 623, 777
AluI	AGCT	6 cut(s)	14, 169, 406, 455, 623, 777
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	3 cut(s)	272, 631, 804
ApeKI	GCWGC	3 cut(s)	169, 200, 406
ApoI	RAATTY	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	582, 810
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	50, 218
AvaII	GGWCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	156, 187, 393
BccI	CCATC	2 cut(s)	50, 539
BciT130I	CCWGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	9, 456
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	811
BfrI	CTTAAG	1 cut(s)	571
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	3 cut(s)	170, 201, 407
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	171, 202, 408
BmcAI	AGTACT	2 cut(s)	245, 504
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	81, 237
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	240, 621
BpmI	CTGGAG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	635
BsaJI	CCNNGG	2 cut(s)	72, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	4 cut(s)	418, 451, 481, 510
Bse3DI	GCAATG	1 cut(s)	796
Bse8I	GATNNNNATC	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	72, 659
BseGI	GGATG	1 cut(s)	636
BseJI	GATNNNNATC	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	4 cut(s)	29, 84, 231, 600
BseNI	ACTGG	4 cut(s)	418, 451, 481, 510
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	156, 187, 393
BseYI	CCCAGC	1 cut(s)	289
Bsh1236I	CGCG	3 cut(s)	233, 580, 823
BsiHKAI	GWGCWC	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	264, 612, 636, 796
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	2 cut(s)	72, 659
BspACI	CCGC	3 cut(s)	233, 578, 794
BspCNI	CTCAG	4 cut(s)	28, 85, 232, 601
BspFNI	CGCG	3 cut(s)	233, 580, 823
BspLI	GGNNCC	2 cut(s)	81, 237
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	3 cut(s)	272, 631, 804
BspTI	CTTAAG	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	4 cut(s)	418, 451, 481, 510
BssECI	CCNNGG	2 cut(s)	72, 659
BssMI	GATC	4 cut(s)	264, 612, 636, 796
BssT1I	CCWWGG	2 cut(s)	72, 659
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	6 cut(s)	15, 93, 113, 240, 609, 624
BstDSI	CCRYGG	2 cut(s)	72, 659
BstF5I	GGATG	1 cut(s)	636
BstFNI	CGCG	3 cut(s)	233, 580, 823
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	2 cut(s)	582, 810
BstKTI	GATC	4 cut(s)	267, 615, 639, 799
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	4 cut(s)	264, 612, 636, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	3 cut(s)	233, 580, 823
BstV1I	GCAGC	3 cut(s)	156, 187, 393
BstX2I	RGATCY	2 cut(s)	264, 612
BstYI	RGATCY	2 cut(s)	264, 612
BtgI	CCRYGG	2 cut(s)	72, 659
BtsCI	GGATG	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	621
CfoI	GCGC	2 cut(s)	582, 810
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	6, 244, 503
CspCI	CAANNNNNGTGG	2 cut(s)	608, 643
CviAII	CATG	5 cut(s)	73, 305, 660, 691, 800
CviQI	GTAC	3 cut(s)	6, 244, 503
DdeI	CTNAG	6 cut(s)	15, 93, 113, 240, 609, 624
DpnI	GATC	4 cut(s)	266, 614, 638, 798
DpnII	GATC	4 cut(s)	264, 612, 636, 796
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	72, 659
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	363
EcoRV	GATATC	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	72, 659
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	72, 659
FaeI	CATG	5 cut(s)	76, 308, 663, 694, 803
FatI	CATG	5 cut(s)	72, 304, 659, 690, 799
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	3 cut(s)	170, 201, 407
FokI	GGATG	1 cut(s)	643
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	3 cut(s)	170, 201, 407
FspBI	CTAG	2 cut(s)	9, 456
GlaI	GCGC	2 cut(s)	581, 809
GluI	GCNGC	3 cut(s)	170, 201, 407
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	811
HhaI	GCGC	2 cut(s)	582, 810
Hin1II	CATG	5 cut(s)	76, 308, 663, 694, 803
Hin6I	GCGC	2 cut(s)	580, 808
HinP1I	GCGC	2 cut(s)	580, 808
HinfI	GANTC	3 cut(s)	22, 89, 735
HphI	GGTGA	2 cut(s)	50, 218
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	4 cut(s)	94, 271, 610, 848
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	3 cut(s)	29, 145, 206
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	203, 488, 619, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	6 cut(s)	15, 93, 113, 240, 609, 624
Hsp92II	CATG	5 cut(s)	76, 308, 663, 694, 803
HspAI	GCGC	2 cut(s)	580, 808
Kzo9I	GATC	4 cut(s)	264, 612, 636, 796
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	3 cut(s)	156, 187, 393
LweI	GCATC	2 cut(s)	240, 621
MaeI	CTAG	2 cut(s)	9, 456
MaeIII	GTNAC	3 cut(s)	61, 67, 824
MalI	GATC	4 cut(s)	266, 614, 638, 798
MboI	GATC	4 cut(s)	264, 612, 636, 796
MboII	GAAGA	6 cut(s)	152, 160, 479, 482, 682, 734
MflI	RGATCY	2 cut(s)	264, 612
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	49, 156, 480
MseI	TTAA	3 cut(s)	536, 572, 813
MspCI	CTTAAG	1 cut(s)	571
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MvnI	CGCG	3 cut(s)	233, 580, 823
MwoI	GCNNNNNNNGC	1 cut(s)	800
NcoI	CCATGG	2 cut(s)	72, 659
NdeII	GATC	4 cut(s)	264, 612, 636, 796
NlaIII	CATG	5 cut(s)	76, 308, 663, 694, 803
NlaIV	GGNNCC	2 cut(s)	81, 237
NmuCI	GTSAC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	22, 89, 735
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	171, 202, 408
PpuMI	RGGWCCY	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	81, 237
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	264, 612
RsaI	GTAC	3 cut(s)	7, 245, 504
RsaNI	GTAC	3 cut(s)	6, 244, 503
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	536, 572, 813
SatI	GCNGC	3 cut(s)	170, 201, 407
Sau3AI	GATC	4 cut(s)	264, 612, 636, 796
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	2 cut(s)	245, 504
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	2 cut(s)	240, 621
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
Sse9I	AATT	3 cut(s)	49, 156, 480
SsiI	CCGC	3 cut(s)	233, 578, 794
SspMI	CTAG	2 cut(s)	9, 456
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	2 cut(s)	72, 659
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	498
TasI	AATT	3 cut(s)	49, 156, 480
TatI	WGTACW	2 cut(s)	243, 502
TfiI	GAWTC	3 cut(s)	22, 89, 735
Tru1I	TTAA	3 cut(s)	536, 572, 813
Tru9I	TTAA	3 cut(s)	536, 572, 813
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	3 cut(s)	169, 200, 406
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	1 cut(s)	679
Vha464I	CTTAAG	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	2 cut(s)	9, 456
ZrmI	AGTACT	2 cut(s)	245, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.