Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Reverse (-)

10186221 .. 10189124

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1117600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCCTCGTGAATCCATGTTGGCATGGTGCAATGGTGGTGTGGTAGAAACGAAGCTCTGCCTTGTTTTAAAAGGGTGTCTTGTTCCTCACTTGATTCAAGCCGTGTCGGTTTCAACGAATTCATCCTCCGTTGCAAAACTAGCCGTGCCTGAAAATGAAGTCGAACAGGTTGAGTTACTCACTGCAACTGAGGATTTACATGGAGGAGTTGTTGTTGACATGACCGAACCTATGGATTCTGTGGTTTTTGCTTCTTTGCTTCAAGCTTCTATATCGCATTGGAGGCATAAGGGGAAGAGGGGCGTTTGGATCAAATTGCCTATCGCACGGTCAAATCTTGTTGATGCCGCAGTTAAGGAAGGATTTAGGTACCACCATGCTGAATCGGATTATTTAATGCTCGTACGTTGGCTTCCCGAAACTGAGGACACCCTTCCTGCAAATGCTTCGCACCGAGTAGGCATTGGCGCTTTTGTCATGAACAGTAAGAGAGAGATACTTGTGGTTCAGGAGATCAGTGGCAGATTCAGAAATACAGGTGTGTGGAAGTTGCCAACTGGGGCTGTTAATGAGGGTGAGGATATTTGTAAAGCTGCAGTTAGAGAGGTCAAAGAAGAGACAGGAATTGATACAGAGTTCGTGGAGGTTTTAGCATTTAGGCAAAGCCACAAGTCATTCTTTCGAAAGTCAGATTTGTTCTTTGTTTGCATGCTGACCCCAAAATCCTTCGACATCCAAAAGCAGAACTCGGAGATTGAGGCAGCCCAGTGGATGCCAGTTGGGGACTATGTAGCTCAACCCTTTGTTAAGAAAAACAAACTCTTTGACTACGTAGCAGAAATATGCTTGGCAAACTCAGACAAGGACTATGCCGGTTTTACTGCGCTGAGTACAACTACATCCTCTGGAAAAAGAAGCTACTTGTACTATAACAACCGGGATATGGAAAACACACAGGCTACCGGTGATCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

326

Amino Acids

36.26

Weight (kDa)

5.81

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	60 - 138	2.2e-30	Nudix hydrolase domain
NUDIX	PF00293	151 - 270	2e-23	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AciI	CCGC	2 cut(s)	348, 971
AclWI	GGATC	2 cut(s)	317, 962
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	4 cut(s)	371, 405, 892, 926
AfiI	CCNNNNNNNGG	1 cut(s)	943
AgeI	ACCGGT	1 cut(s)	962
AgsI	TTSAA	3 cut(s)	98, 114, 263
AluBI	AGCT	5 cut(s)	55, 266, 593, 794, 918
AluI	AGCT	5 cut(s)	55, 266, 593, 794, 918
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	2 cut(s)	317, 962
ApeKI	GCWGC	2 cut(s)	593, 761
ApoI	RAATTY	1 cut(s)	118
AsiGI	ACCGGT	1 cut(s)	962
Asp718I	GGTACC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	470, 886
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	2 cut(s)	587, 977
AsuII	TTCGAA	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	580, 773
BceAI	ACGGC	2 cut(s)	86, 128
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	471
BisI	GCNGC	3 cut(s)	348, 594, 762
BlsI	GCNGC	3 cut(s)	349, 595, 763
Bme1390I	CCNGG	1 cut(s)	938
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	938
BmrI	ACTGGG	2 cut(s)	567, 760
BmsI	GCATC	2 cut(s)	334, 762
BmuI	ACTGGG	2 cut(s)	567, 760
Bpu14I	TTCGAA	1 cut(s)	682
BpuMI	CCSGG	1 cut(s)	938
BsaAI	YACGTR	1 cut(s)	832
BsaWI	WCCGGW	1 cut(s)	962
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 198, 225, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	943
Bse118I	RCCGGY	2 cut(s)	872, 962
Bse1I	ACTGG	3 cut(s)	562, 766, 776
Bse3DI	GCAATG	1 cut(s)	37
BseGI	GGATG	4 cut(s)	122, 732, 777, 899
BseLI	CCNNNNNNNGG	1 cut(s)	943
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	180, 414, 870, 878
BseNI	ACTGG	3 cut(s)	562, 766, 776
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	580, 773
BshNI	GGYRCC	1 cut(s)	369
BshTI	ACCGGT	1 cut(s)	962
BsiSI	CCGG	3 cut(s)	873, 937, 963
BsiWI	CGTACG	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	1 cut(s)	943
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	797
Bsp119I	TTCGAA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	309, 513, 967
BspACI	CCGC	2 cut(s)	348, 971
BspCNI	CTCAG	4 cut(s)	181, 415, 869, 879
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	317, 962
BspT104I	TTCGAA	1 cut(s)	682
BspT107I	GGYRCC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	2 cut(s)	872, 962
BsrI	ACTGG	3 cut(s)	562, 766, 776
BssAI	RCCGGY	2 cut(s)	872, 962
BssMI	GATC	3 cut(s)	309, 513, 967
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	330, 485
Bst6I	CTCTTC	2 cut(s)	290, 609
BstBAI	YACGTR	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	4 cut(s)	189, 423, 856, 887
BstF5I	GGATG	4 cut(s)	122, 732, 777, 899
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	470, 886
BstKTI	GATC	3 cut(s)	312, 516, 970
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	3 cut(s)	309, 513, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 283
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	936
BstSFI	CTRYAG	1 cut(s)	594
BstSNI	TACGTA	1 cut(s)	832
BstV1I	GCAGC	2 cut(s)	580, 773
BtsCI	GGATG	4 cut(s)	122, 732, 777, 899
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	180, 523, 773
Cac8I	GCNNGC	1 cut(s)	710
CciI	TCATGA	1 cut(s)	477
CfoI	GCGC	2 cut(s)	470, 886
Cfr10I	RCCGGY	2 cut(s)	872, 962
Csp6I	GTAC	4 cut(s)	370, 404, 891, 925
CspAI	ACCGGT	1 cut(s)	962
CviAII	CATG	7 cut(s)	16, 24, 200, 220, 377, 478, 709
CviQI	GTAC	4 cut(s)	370, 404, 891, 925
DdeI	CTNAG	4 cut(s)	189, 423, 856, 887
DpnI	GATC	3 cut(s)	311, 515, 969
DpnII	GATC	3 cut(s)	309, 513, 967
DraI	TTTAAA	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	290, 609
EarI	CTCTTC	2 cut(s)	290, 609
Eco105I	TACGTA	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	118
FaeI	CATG	7 cut(s)	19, 27, 203, 223, 380, 481, 712
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 662, 694
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	7 cut(s)	15, 23, 199, 219, 376, 477, 708
Fnu4HI	GCNGC	3 cut(s)	348, 594, 762
FokI	GGATG	4 cut(s)	109, 719, 784, 886
Fsp4HI	GCNGC	3 cut(s)	348, 594, 762
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	2 cut(s)	469, 885
GluI	GCNGC	3 cut(s)	348, 594, 762
HaeII	RGCGCY	1 cut(s)	471
HapII	CCGG	3 cut(s)	873, 937, 963
HhaI	GCGC	2 cut(s)	470, 886
Hin1II	CATG	7 cut(s)	19, 27, 203, 223, 380, 481, 712
Hin6I	GCGC	2 cut(s)	468, 884
HinP1I	GCGC	2 cut(s)	468, 884
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	5 cut(s)	11, 94, 236, 383, 525
HpaII	CCGG	3 cut(s)	873, 937, 963
HphI	GGTGA	2 cut(s)	587, 977
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	5 cut(s)	388, 530, 691, 751, 859
Hpy188III	TCNNGA	5 cut(s)	8, 416, 478, 509, 906
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	353, 443, 736
HpyCH4III	ACNGT	2 cut(s)	330, 485
HpyCH4IV	ACGT	2 cut(s)	406, 831
HpyCH4V	TGCA	6 cut(s)	30, 134, 185, 440, 596, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 283
HpyF3I	CTNAG	4 cut(s)	189, 423, 856, 887
HpySE526I	ACGT	2 cut(s)	406, 831
Hsp92II	CATG	7 cut(s)	19, 27, 203, 223, 380, 481, 712
HspAI	GCGC	2 cut(s)	468, 884
KpnI	GGTACC	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	309, 513, 967
Lsp1109I	GCAGC	2 cut(s)	580, 773
LweI	GCATC	2 cut(s)	334, 762
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	406, 831
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	311, 515, 969
MboI	GATC	3 cut(s)	309, 513, 967
MboII	GAAGA	2 cut(s)	307, 626
MluCI	AATT	3 cut(s)	118, 314, 624
MseI	TTAA	5 cut(s)	68, 354, 395, 567, 807
MspI	CCGG	3 cut(s)	873, 937, 963
MspR9I	CCNGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	2 cut(s)	140, 283
NciI	CCSGG	1 cut(s)	938
NdeII	GATC	3 cut(s)	309, 513, 967
NlaIII	CATG	7 cut(s)	19, 27, 203, 223, 380, 481, 712
NlaIV	GGNNCC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	712
NspV	TTCGAA	1 cut(s)	682
PaeI	GCATGC	1 cut(s)	712
PagI	TCATGA	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PfeI	GAWTC	5 cut(s)	11, 94, 236, 383, 525
Pfl23II	CGTACG	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	962
PkrI	GCNGC	3 cut(s)	349, 595, 763
Ppu21I	YACGTR	1 cut(s)	832
PspLI	CGTACG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	598
RsaI	GTAC	4 cut(s)	371, 405, 892, 926
RsaNI	GTAC	4 cut(s)	370, 404, 891, 925
SaqAI	TTAA	5 cut(s)	68, 354, 395, 567, 807
SatI	GCNGC	3 cut(s)	348, 594, 762
Sau3AI	GATC	3 cut(s)	309, 513, 967
ScrFI	CCNGG	1 cut(s)	938
SfaNI	GCATC	2 cut(s)	334, 762
SfcI	CTRYAG	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	682
SnaBI	TACGTA	1 cut(s)	832
SphI	GCATGC	1 cut(s)	712
Sse9I	AATT	3 cut(s)	118, 314, 624
SsiI	CCGC	2 cut(s)	348, 971
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	936
TaaI	ACNGT	2 cut(s)	330, 485
TaiI	ACGT	2 cut(s)	409, 834
TaqI	TCGA	3 cut(s)	162, 682, 729
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	118, 314, 624
TatI	WGTACW	2 cut(s)	890, 924
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	5 cut(s)	11, 94, 236, 383, 525
Tru1I	TTAA	5 cut(s)	68, 354, 395, 567, 807
Tru9I	TTAA	5 cut(s)	68, 354, 395, 567, 807
TscAI	CASTG	3 cut(s)	187, 523, 773
TseI	GCWGC	2 cut(s)	593, 761
TspDTI	ATGAA	3 cut(s)	111, 171, 494
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	3 cut(s)	187, 523, 773
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	712
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.