Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Forward (+)

69704487 .. 69708029

Gene Structure 3543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAGTTTCAACAAGTTCATGTGCTGTTGCAAAGCAATGCTTGACGGCCGAAAGTGGAGTTGAGCAGATTGAATTGCTCAATGCACATGATGATATACATGGGGGAGTTGTTGTAGACATGAAAGACCAGCCCATGGATTCTGAGGTCTTTGGTTCTTTGCTCAAAGCTTCACTGTCAGAATGGAGGCAAAAGGAAAAGAAGGGTGTTTGGATCAAATTGCCGATTGAACTCTCAAATCTTGTTCATGCTGCAGTTCAGGAAGGATTTACTTATCACCATGCTGAATCAGATTACCTAATGCTTAAACGTTGGCTACCTGAAACTGTTGATACTCTTCCTGCGAATGCCTCTCATCGAGTGGGCATTGGTGCTTTCATCATGAACAGTAAGAGAGAGGTGCTTGTGGTTCAGGAGATCAATGGCAGATTCAAAGATACAGGTGTCTGGAAGATGCCAACTGGGGCTGTTAATGAAGGAGAGGATATTTGTGCAGCAGCAGTTAGGGAAGTCAAAGAAGAGACAGGAATTGAGACAGAGTTTGTGGAAATATTAGCGTTCAGGCAAAGCCACAAGTCATTCTTTCAAAAATCAGATTTATTTTTCGTTTGTATGTTAAAACCGCAAACCTTTGACATACAGGAGCAGAATCAAGAGATTGCGGCAGCCCAGTGGATGCCATTTGAGGACTATGCAGCTCAACCCTTTGTCAAACAAAACAAACTCTTTGATTATGTAGCAGAAATATGTTTGGCAAAAACAGATGAGCATTATACTGGGTTTACTCCTCTAGCAACGACTACATCCTCCGGAAAAGCAAGCTACTTGTATTTCAACCACCGGGATATGGGTGGCCTACTCACTTCCGATAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

294

Amino Acids

32.9

Weight (kDa)

5.16

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	27 - 106	2.7e-31	Nudix hydrolase domain
NUDIX	PF00293	119 - 239	1.6e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	809
AciI	CCGC	2 cut(s)	623, 662
AclI	AACGTT	1 cut(s)	310
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	136, 847
AgsI	TTSAA	6 cut(s)	12, 74, 230, 433, 587, 835
AluBI	AGCT	3 cut(s)	170, 698, 822
AluI	AGCT	3 cut(s)	170, 698, 822
Alw26I	GTCTC	2 cut(s)	515, 527
AlwI	GGATC	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	809
AoxI	GGCC	2 cut(s)	48, 853
ApeKI	GCWGC	5 cut(s)	251, 494, 497, 665, 695
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	269
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BbvI	GCAGC	5 cut(s)	238, 506, 509, 677, 707
BceAI	ACGGC	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	2 cut(s)	515, 527
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	6 cut(s)	252, 495, 498, 663, 666, 696
BlsI	GCNGC	6 cut(s)	253, 496, 499, 664, 667, 697
Bme1390I	CCNGG	1 cut(s)	842
BmrFI	CCNGG	1 cut(s)	842
BmrI	ACTGGG	3 cut(s)	471, 664, 786
BmsI	GCATC	2 cut(s)	444, 666
BmuI	ACTGGG	3 cut(s)	471, 664, 786
BpuMI	CCSGG	1 cut(s)	842
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	809
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 847
Bse1I	ACTGG	3 cut(s)	466, 670, 781
Bse3DI	GCAATG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	681, 803
BseLI	CCNNNNNNNGG	2 cut(s)	136, 847
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	466, 670, 781
BseRI	GAGGAG	1 cut(s)	777
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	5 cut(s)	238, 506, 509, 677, 707
BsgI	GTGCAG	1 cut(s)	513
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 855
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	810, 841
BslI	CCNNNNNNNGG	2 cut(s)	136, 847
BsmAI	GTCTC	2 cut(s)	515, 527
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	50, 855
Bsp13I	TCCGGA	1 cut(s)	809
Bsp143I	GATC	2 cut(s)	213, 417
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	623, 662
BspANI	GGCC	2 cut(s)	50, 855
BspCNI	CTCAG	1 cut(s)	136
BspEI	TCCGGA	1 cut(s)	809
BspHI	TCATGA	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	466, 670, 781
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	213, 417
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	177, 328, 389, 879
Bst6I	CTCTTC	2 cut(s)	342, 513
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	681, 803
BstKTI	GATC	2 cut(s)	216, 420
BstMAI	GTCTC	2 cut(s)	515, 527
BstMBI	GATC	2 cut(s)	213, 417
BstMCI	CGRYCG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	840
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	238, 506, 509, 677, 707
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 855
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	681, 803
BtsIMutI	CAGTG	2 cut(s)	173, 677
Cac8I	GCNNGC	1 cut(s)	820
CciI	TCATGA	1 cut(s)	381
CviAII	CATG	8 cut(s)	21, 89, 101, 121, 136, 248, 281, 382
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	215, 419
DpnII	GATC	2 cut(s)	213, 417
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	342, 513
EarI	CTCTTC	2 cut(s)	342, 513
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	8 cut(s)	24, 92, 104, 124, 139, 251, 284, 385
FalI	AAGNNNNNCTT	4 cut(s)	26, 58, 566, 598
FatI	CATG	8 cut(s)	20, 88, 100, 120, 135, 247, 280, 381
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	6 cut(s)	252, 495, 498, 663, 666, 696
FokI	GGATG	2 cut(s)	688, 790
Fsp4HI	GCNGC	6 cut(s)	252, 495, 498, 663, 666, 696
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	6 cut(s)	252, 495, 498, 663, 666, 696
HaeIII	GGCC	2 cut(s)	50, 855
HapII	CCGG	2 cut(s)	810, 841
Hin1II	CATG	8 cut(s)	24, 92, 104, 124, 139, 251, 284, 385
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	4 cut(s)	140, 287, 429, 649
HpaII	CCGG	2 cut(s)	810, 841
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	118, 783
Hpy188I	TCNGA	5 cut(s)	145, 181, 292, 595, 868
Hpy188III	TCNNGA	6 cut(s)	260, 382, 413, 448, 653, 810
Hpy8I	GTNNAC	2 cut(s)	118, 783
HpyAV	CCTTC	3 cut(s)	196, 257, 470
HpyCH4III	ACNGT	4 cut(s)	177, 328, 389, 879
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	5 cut(s)	32, 86, 254, 494, 695
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	8 cut(s)	24, 92, 104, 124, 139, 251, 284, 385
Kpn2I	TCCGGA	1 cut(s)	809
Kzo9I	GATC	2 cut(s)	213, 417
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	5 cut(s)	238, 506, 509, 677, 707
LweI	GCATC	2 cut(s)	444, 666
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	1 cut(s)	310
MalI	GATC	2 cut(s)	215, 419
MboI	GATC	2 cut(s)	213, 417
MboII	GAAGA	3 cut(s)	329, 463, 530
MluCI	AATT	3 cut(s)	74, 218, 528
MnlI	CCTC	8 cut(s)	139, 180, 361, 391, 475, 679, 798, 817
MroI	TCCGGA	1 cut(s)	809
MseI	TTAA	3 cut(s)	306, 471, 617
MspI	CCGG	2 cut(s)	810, 841
MspR9I	CCNGG	1 cut(s)	842
Mva1269I	GAATGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	842
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	213, 417
NlaIII	CATG	8 cut(s)	24, 92, 104, 124, 139, 251, 284, 385
PagI	TCATGA	1 cut(s)	381
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	140, 287, 429, 649
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	6 cut(s)	253, 496, 499, 664, 667, 697
Psp1406I	AACGTT	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	306, 471, 617
SatI	GCNGC	6 cut(s)	252, 495, 498, 663, 666, 696
Sau3AI	GATC	2 cut(s)	213, 417
ScrFI	CCNGG	1 cut(s)	842
SfaNI	GCATC	2 cut(s)	444, 666
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	74, 218, 528
SsiI	CCGC	2 cut(s)	623, 662
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	177, 328, 389, 879
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	74, 218, 528
TauI	GCSGC	1 cut(s)	665
TfiI	GAWTC	4 cut(s)	140, 287, 429, 649
Tru1I	TTAA	3 cut(s)	306, 471, 617
Tru9I	TTAA	3 cut(s)	306, 471, 617
TscAI	CASTG	2 cut(s)	180, 677
TseI	GCWGC	5 cut(s)	251, 494, 497, 665, 695
TspDTI	ATGAA	6 cut(s)	9, 137, 236, 367, 398, 489
TspRI	CASTG	2 cut(s)	180, 677
Van91I	CCANNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.