Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Reverse (-)

3850733 .. 3854304

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05180.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCAGATGTTGAGAGCCACCACCAAGCTTTTGCCATATCTTTCTTCTGCAGACAAAGGTTCTTCTGCGTCTTCTGTTGTCGCCCATCATCATTTTTTAACAAAGAGGCCTTGCTTTGGAACTCCTTCACCTTCCTCACCATCCTTGCCTGGCTTTCACAAAGATTCAAAAGATAAAGTTCCACACTCGATTCAAGCCATGCCGGTTTCAACGAATTCATCCTCCGTTGCACAACAAGCCGTGCCTGAAAATGAAGTCGAACAGGTTGAGTTGCTCGCTGCAGTTGAGGATTTATATGGAGGAGTTGTTGTGGACGTGACCGAACCTATGGATTCTGCGGTTTTCGCCTCTTTGCTCCAAGCTTCCATATCGCAATGGAGGCAAAAGGGGAAGAAGGGCTTCTGGATCAAATTGCCTATCGAACGGTCAAATCTTGTTGATGCCGCAGTTAAGGAAGGATTTAGGTACCACCATGCTGAATCAGATTACTTAATGCTTGTACGTTGGATTTCCGAAACTGATGATACTCTGCCTGCAAATGCTTCGCACCGAGTGGGCATTGGCGCTTTTGTCATGAACAGTAAGAGGGAGGTGCTTGTGGTTCAGGAGTTAAGTGGTAGATTCAGCAATACAGATGTGTGGAAGATGCCAACTGGGGTTGTCAATGAAGGTGAGGATATCTGCGAAGCTGCTGTTAGAGAGGTTAAAGAAGAGACAGGAATTGATACGGAGTTCGTGGAGGTTTTAGCTTTTAGGCAAAGCCACAAGTCATTCTTTCGAAAGTCAGATTTGTTCATTGTTTGCATGTTGACCCCAAAATCCTTTGACATCCAAGAGCAGAACTTGGAGATTGAGGCAGCCCAGTGGATGCCAGTTGCGGACTATGCAGCTCAACCCTTTGTTAAGAAAAACAAACTCTTTGACTATATAGCAAAAATATGCTTGGCAAAATCAGACAAGAACTATGTCGGTTTTACTGCGCTGGGTACAACTACATCCTCTGGAAAAAGAAGCTACCTGTACTATAACAACCGGGATATGGAAAACCTACTGGCCACCGGTGATCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

358

Amino Acids

39.7

Weight (kDa)

5.89

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AciI	CCGC	3 cut(s)	338, 444, 878
AclWI	GGATC	2 cut(s)	413, 1058
AcoI	YGGCCR	1 cut(s)	1053
AcsI	RAATTY	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	4 cut(s)	467, 501, 988, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	116, 1039
AgeI	ACCGGT	1 cut(s)	1058
AgsI	TTSAA	3 cut(s)	168, 194, 210
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	6 cut(s)	28, 362, 689, 749, 890, 1014
AluI	AGCT	6 cut(s)	28, 362, 689, 749, 890, 1014
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	413, 1058
AoxI	GGCC	2 cut(s)	107, 1053
ApeKI	GCWGC	4 cut(s)	278, 689, 857, 887
ApoI	RAATTY	1 cut(s)	214
AsiGI	ACCGGT	1 cut(s)	1058
Asp700I	GAANNNNTTC	2 cut(s)	124, 398
Asp718I	GGTACC	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	566, 982
AsuC2I	CCSGG	1 cut(s)	1034
AsuHPI	GGTGA	4 cut(s)	120, 129, 683, 1073
AsuII	TTCGAA	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	1055
BanI	GGYRCC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	265, 676, 869, 899
BccI	CCATC	2 cut(s)	93, 148
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	1034
BcoDI	GTCTC	1 cut(s)	707
BfmI	CTRYAG	2 cut(s)	48, 279
BfoI	RGCGCY	1 cut(s)	567
BisI	GCNGC	5 cut(s)	279, 444, 690, 858, 888
BlsI	GCNGC	5 cut(s)	280, 445, 691, 859, 889
Bme1390I	CCNGG	2 cut(s)	150, 1034
BmgBI	CACGTC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	150, 1034
BmrI	ACTGGG	2 cut(s)	663, 856
BmsI	GCATC	3 cut(s)	430, 636, 858
BmuI	ACTGGG	2 cut(s)	663, 856
BpiI	GAAGAC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	1034
BsaWI	WCCGGW	1 cut(s)	1058
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 294, 321, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 1039
Bse118I	RCCGGY	2 cut(s)	202, 1058
Bse1I	ACTGG	4 cut(s)	658, 862, 872, 1056
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	150
BseGI	GGATG	5 cut(s)	140, 218, 828, 873, 995
BseLI	CCNNNNNNNGG	2 cut(s)	116, 1039
BseMI	GCAATG	1 cut(s)	380
BseNI	ACTGG	4 cut(s)	658, 862, 872, 1056
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	4 cut(s)	265, 676, 869, 899
BseYI	CCCAGC	1 cut(s)	982
BshFI	GGCC	2 cut(s)	109, 1055
BshNI	GGYRCC	1 cut(s)	465
BshTI	ACCGGT	1 cut(s)	1058
BsiSI	CCGG	3 cut(s)	203, 1033, 1059
BslI	CCNNNNNNNGG	2 cut(s)	116, 1039
BsmAI	GTCTC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	109, 1055
Bsp119I	TTCGAA	1 cut(s)	778
Bsp143I	GATC	2 cut(s)	405, 1063
BspACI	CCGC	3 cut(s)	338, 444, 878
BspANI	GGCC	2 cut(s)	109, 1055
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	2 cut(s)	52, 283
BspPI	GGATC	2 cut(s)	413, 1058
BspT104I	TTCGAA	1 cut(s)	778
BspT107I	GGYRCC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	202, 1058
BsrI	ACTGG	4 cut(s)	658, 862, 872, 1056
BssAI	RCCGGY	2 cut(s)	202, 1058
BssMI	GATC	2 cut(s)	405, 1063
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	426, 581
Bst6I	CTCTTC	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	2 cut(s)	276, 534
BstDEI	CTNAG	1 cut(s)	1068
BstF5I	GGATG	5 cut(s)	140, 218, 828, 873, 995
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	2 cut(s)	566, 982
BstKTI	GATC	2 cut(s)	408, 1066
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	2 cut(s)	405, 1063
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 344, 379, 884
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	2 cut(s)	148, 1032
BstSFI	CTRYAG	2 cut(s)	48, 279
BstV1I	GCAGC	4 cut(s)	265, 676, 869, 899
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	109, 1055
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	5 cut(s)	140, 218, 828, 873, 995
BtsIMutI	CAGTG	1 cut(s)	869
Cac8I	GCNNGC	2 cut(s)	276, 534
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	2 cut(s)	566, 982
Cfr10I	RCCGGY	2 cut(s)	202, 1058
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	4 cut(s)	466, 500, 987, 1021
CspAI	ACCGGT	1 cut(s)	1058
CviAII	CATG	4 cut(s)	199, 473, 574, 805
CviQI	GTAC	4 cut(s)	466, 500, 987, 1021
DdeI	CTNAG	1 cut(s)	1068
DpnI	GATC	2 cut(s)	407, 1065
DpnII	GATC	2 cut(s)	405, 1063
DraIII	CACNNNGTG	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	679
FaeI	CATG	4 cut(s)	202, 476, 577, 808
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 758, 790
FatI	CATG	4 cut(s)	198, 472, 573, 804
Fnu4HI	GCNGC	5 cut(s)	279, 444, 690, 858, 888
FokI	GGATG	5 cut(s)	127, 205, 815, 880, 982
Fsp4HI	GCNGC	5 cut(s)	279, 444, 690, 858, 888
GlaI	GCGC	2 cut(s)	565, 981
GluI	GCNGC	5 cut(s)	279, 444, 690, 858, 888
GsaI	CCCAGC	1 cut(s)	986
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	109, 1055
HapII	CCGG	3 cut(s)	203, 1033, 1059
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	566, 982
Hin1II	CATG	4 cut(s)	202, 476, 577, 808
Hin6I	GCGC	2 cut(s)	564, 980
HinP1I	GCGC	2 cut(s)	564, 980
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HindIII	AAGCTT	2 cut(s)	26, 360
HinfI	GANTC	5 cut(s)	164, 190, 332, 479, 621
HpaII	CCGG	3 cut(s)	203, 1033, 1059
HphI	GGTGA	4 cut(s)	120, 129, 683, 1073
Hpy166II	GTNNAC	2 cut(s)	313, 810
Hpy188I	TCNGA	4 cut(s)	484, 514, 787, 955
Hpy188III	TCNNGA	4 cut(s)	403, 574, 605, 1002
Hpy8I	GTNNAC	2 cut(s)	313, 810
HpyAV	CCTTC	5 cut(s)	135, 141, 388, 449, 662
HpyCH4III	ACNGT	2 cut(s)	426, 581
HpyCH4IV	ACGT	2 cut(s)	315, 502
HpyCH4V	TGCA	7 cut(s)	4, 50, 230, 281, 536, 804, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 344, 379, 884
HpyF3I	CTNAG	1 cut(s)	1068
HpySE526I	ACGT	2 cut(s)	315, 502
Hsp92II	CATG	4 cut(s)	202, 476, 577, 808
HspAI	GCGC	2 cut(s)	564, 980
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	405, 1063
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	4 cut(s)	265, 676, 869, 899
LweI	GCATC	3 cut(s)	430, 636, 858
MaeII	ACGT	2 cut(s)	315, 502
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	407, 1065
MboI	GATC	2 cut(s)	405, 1063
MboII	GAAGA	6 cut(s)	36, 54, 63, 403, 655, 722
MlsI	TGGCCA	1 cut(s)	1055
MluCI	AATT	3 cut(s)	214, 410, 720
MluNI	TGGCCA	1 cut(s)	1055
MmeI	TCCRAC	1 cut(s)	485
Mox20I	TGGCCA	1 cut(s)	1055
MroXI	GAANNNNTTC	2 cut(s)	124, 398
MscI	TGGCCA	1 cut(s)	1055
MseI	TTAA	6 cut(s)	98, 450, 491, 611, 705, 903
Msp20I	TGGCCA	1 cut(s)	1055
MspI	CCGG	3 cut(s)	203, 1033, 1059
MspR9I	CCNGG	2 cut(s)	150, 1034
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	4 cut(s)	236, 344, 379, 884
NciI	CCSGG	1 cut(s)	1034
NdeII	GATC	2 cut(s)	405, 1063
NlaIII	CATG	4 cut(s)	202, 476, 577, 808
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	808
NspV	TTCGAA	1 cut(s)	778
PagI	TCATGA	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	109
PdmI	GAANNNNTTC	2 cut(s)	124, 398
PfeI	GAWTC	5 cut(s)	164, 190, 332, 479, 621
PinAI	ACCGGT	1 cut(s)	1058
PkrI	GCNGC	5 cut(s)	280, 445, 691, 859, 889
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	982
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	467
PstI	CTGCAG	2 cut(s)	52, 283
RsaI	GTAC	4 cut(s)	467, 501, 988, 1022
RsaNI	GTAC	4 cut(s)	466, 500, 987, 1021
SaqAI	TTAA	6 cut(s)	98, 450, 491, 611, 705, 903
SatI	GCNGC	5 cut(s)	279, 444, 690, 858, 888
Sau3AI	GATC	2 cut(s)	405, 1063
ScrFI	CCNGG	2 cut(s)	150, 1034
SfaNI	GCATC	3 cut(s)	430, 636, 858
SfcI	CTRYAG	2 cut(s)	48, 279
SfuI	TTCGAA	1 cut(s)	778
SgrAI	CRCCGGYG	1 cut(s)	1058
Sse9I	AATT	3 cut(s)	214, 410, 720
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	3 cut(s)	338, 444, 878
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	148, 1032
TaaI	ACNGT	2 cut(s)	426, 581
TaiI	ACGT	2 cut(s)	318, 505
TaqI	TCGA	4 cut(s)	188, 258, 420, 778
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	214, 410, 720
TatI	WGTACW	1 cut(s)	1020
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	5 cut(s)	164, 190, 332, 479, 621
Tru1I	TTAA	6 cut(s)	98, 450, 491, 611, 705, 903
Tru9I	TTAA	6 cut(s)	98, 450, 491, 611, 705, 903
TscAI	CASTG	1 cut(s)	869
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	278, 689, 857, 887
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	5 cut(s)	207, 267, 590, 681, 784
TspGWI	ACGGA	2 cut(s)	214, 743
TspRI	CASTG	1 cut(s)	869
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	808
XmnI	GAANNNNTTC	2 cut(s)	124, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.