Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001476

Physical Location & Seq

Genomic Coordinates Reverse (-)

3835251 .. 3838626

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTATGAAGTGGAGTTCCCGGAACGGGGAAAAATTTCTCTATTTTTACAACATATTCACGAAGTTTCCAAGCAAATTCATCGTTATATTACTCTCTTGGAAACTGACAACGTTTGCCAAATACCGTACCAAAAACTGCAAAAGATTCCACGTTCAAAGTCGCAAAAACCGGCAGAAGCAGCACAGAAGGAACCAAGAAGATTCATCATTTCTTCTTCGCAGCCAAAGCCGAAAATGCATAAAATCCTTCCACGTGTATATATGTTGATGCAGAGGTTGAGAGCCACCACCAAGCTTTTGCCATATCTTTCTTCTGCAGACAAAGGTTCTTCTGCGTCATCTGTTGTTGCCCATCATCATTCTTTAACAAAGAGGCCTTGCTTTGGAACTCCTTCACCTTCCTCACCATCCTTGACTGGCTTTCACAAAGATTCAAAAGATAAAGTTCCACACTTGATTCAAGCCATGCCATTTTTAACGAGTTCATCCACCGTTGCACAACAAGCCGTGCCTGAAAATGAAGTCGAACAGGTTGAGTTGCTCGCTGCAGTTGAGGATTTATATGGAGGAGTTGTTGTGGACGTGACTGAACCTATGGATTCTGCGGTTTTCGCTTCTTTGCTTCAAGCTTCCATATCGCAATGGAGGCAAAAGGGGAAGAAGGGCGTTTGGATCAAATTGCCTATCGAACGGTCAAATCTAGTTGATGCCGCAGTTAAGGAAGGATTTAGGTACCACCATGCTGAATCAGATTACTTAATGCTTGTACGTTGGATTTCCGAAACTGATGATAGACTCCCTGTAAATGCTTCGCACAGAGTGGGCATTGGAGCTTTTGTCATGAACAGTAACAGAGAGGTGCTTGTGGTTCAGGAGTTAAGTGGCAGATTCAGAAATACGGGTGTGTGGAAGATGCCAACTGGGGTTGTCAATGAAAAGCCCCTCTTTATATTCTCTCCATCTCTCTACAGGCAAAGCCACAAGTCATTCTTTCGAAAGTCAGATTTGTTCATTGTTTGCATGTTGACCCCAAAATCGTTCGACATCCAAGAGCAGAACTTGGAGATTGAGGCAGCCCAGTGGATGCCAGCTGCGGACTATGCAGCTCAACCCTTTGTTAAGAAAAACAAACTCTTTGACTATATAGCAAAAATATGCTTGGCAAAATCAGACAAGAACTATGTCGGTTTTACTGCGCTGGGTACAACTACATCCTCTGGAAAAAGAAGCTACCTGTACTATAACAACCGGGATATGGAAAACCTACTGGCTACCGGTGATCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004551 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0023051 GO:0023056 GO:0035529 GO:0036094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051287 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080151 GO:0097159 GO:1901265 GO:1901363 GO:2000031 GO:2001023 GO:2001025 GO:2001038 GO:2001040

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

430

Amino Acids

48.55

Weight (kDa)

9.37

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720 AT4G12720
fragaria_vesca	FvH4_6g40580 FvH4_6g40580 FvH4_6g40580 FvH4_6g40580
malus_domestica	MD09G1127900.v1.1 MD17G1117600.v1.1
prunus_persica	Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1 Prupe.3G197000_v2.0.a1
pyrus_communis	pycom09g05170 pycom09g05180 pycom17g10820
rosa_chinensis	RchiOBHm_Chr2g0155851 RchiOBHm_Chr2g0155861 RchiOBHm_Chr2g0155881
rosa_laevigata	RLG00000020870 RLG00000020871 RLG00000020872
rosa_multiflora	Rmu_sc0003417.1_g000021 Rmu_sc0005929.1_g000014
rosa_roxburghii	Rroxscaffold_2G00093430
rosa_rugosa	Rorug02G0450200 Rorug02G0450300 Rorug02G0450400 Rorug02G0450500
rosa_samantha	Rh2AG516700 Rh2AG516800 Rh2AG517100 Rh2BG527600 Rh2BG527700 Rh2BG527800 Rh2BG528100 Rh2CG501500 Rh2CG501600 Rh2CG501800 Rh2DG536800 Rh2DG536900 Rh2DG537000 Rh2DG537300 Rh5AG245500
rosa_wichuraiana	Rw2G042500 Rw2G042510 Rw2G042520 Rw2G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AciI	CCGC	3 cut(s)	605, 711, 1094
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	2 cut(s)	680, 1274
AcsI	RAATTY	2 cut(s)	33, 75
AcvI	CACGTG	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	5 cut(s)	128, 734, 768, 1204, 1238
AfiI	CCNNNNNNNGG	4 cut(s)	25, 26, 383, 1255
AflIII	ACRYGT	1 cut(s)	253
AgeI	ACCGGT	1 cut(s)	1274
AgsI	TTSAA	4 cut(s)	156, 435, 461, 626
AjiI	CACGTC	1 cut(s)	583
AluBI	AGCT	6 cut(s)	295, 629, 833, 1091, 1106, 1230
AluI	AGCT	6 cut(s)	295, 629, 833, 1091, 1106, 1230
AlwI	GGATC	2 cut(s)	680, 1274
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	6 cut(s)	179, 220, 545, 1073, 1091, 1103
ApoI	RAATTY	2 cut(s)	33, 75
AsiGI	ACCGGT	1 cut(s)	1274
Asp700I	GAANNNNTTC	2 cut(s)	34, 391
Asp718I	GGTACC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	1198
AsuC2I	CCSGG	2 cut(s)	20, 1250
AsuHPI	GGTGA	3 cut(s)	387, 396, 1289
AsuII	TTCGAA	1 cut(s)	994
BanI	GGYRCC	1 cut(s)	732
BbrPI	CACGTG	1 cut(s)	254
BbvI	GCAGC	6 cut(s)	191, 232, 532, 1078, 1085, 1115
BccI	CCATC	3 cut(s)	360, 415, 967
BceAI	ACGGC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BcnI	CCSGG	2 cut(s)	20, 1250
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	3 cut(s)	315, 546, 967
BisI	GCNGC	7 cut(s)	180, 221, 546, 711, 1074, 1092, 1104
BlsI	GCNGC	7 cut(s)	181, 222, 547, 712, 1075, 1093, 1105
Bme1390I	CCNGG	2 cut(s)	20, 1250
BmgBI	CACGTC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	192, 734
BmrFI	CCNGG	2 cut(s)	20, 1250
BmrI	ACTGGG	2 cut(s)	930, 1072
BmsI	GCATC	4 cut(s)	258, 697, 903, 1074
BmuI	ACTGGG	2 cut(s)	930, 1072
Bpu14I	TTCGAA	1 cut(s)	994
BpuMI	CCSGG	2 cut(s)	20, 1250
BsaAI	YACGTR	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	1274
BsaXI	ACNNNNNCTCC	6 cut(s)	558, 561, 588, 591, 822, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 26, 383, 1255
Bse118I	RCCGGY	2 cut(s)	169, 1274
Bse1I	ACTGG	4 cut(s)	421, 925, 1078, 1272
Bse3DI	GCAATG	1 cut(s)	647
BseGI	GGATG	5 cut(s)	407, 485, 1044, 1089, 1211
BseLI	CCNNNNNNNGG	4 cut(s)	25, 26, 383, 1255
BseMI	GCAATG	1 cut(s)	647
BseNI	ACTGG	4 cut(s)	421, 925, 1078, 1272
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	6 cut(s)	191, 232, 532, 1078, 1085, 1115
BseYI	CCCAGC	1 cut(s)	1198
BshFI	GGCC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	732
BshTI	ACCGGT	1 cut(s)	1274
BsiSI	CCGG	4 cut(s)	20, 170, 1249, 1275
BslI	CCNNNNNNNGG	4 cut(s)	25, 26, 383, 1255
BsnI	GGCC	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	994
Bsp143I	GATC	2 cut(s)	672, 1279
BspACI	CCGC	3 cut(s)	605, 711, 1094
BspANI	GGCC	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	2 cut(s)	192, 734
BspMAI	CTGCAG	2 cut(s)	319, 550
BspPI	GGATC	2 cut(s)	680, 1274
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	647
BsrFI	RCCGGY	2 cut(s)	169, 1274
BsrI	ACTGG	4 cut(s)	421, 925, 1078, 1272
BssAI	RCCGGY	2 cut(s)	169, 1274
BssMI	GATC	2 cut(s)	672, 1279
Bst4CI	ACNGT	4 cut(s)	126, 493, 693, 848
BstBAI	YACGTR	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	2 cut(s)	543, 1089
BstDEI	CTNAG	1 cut(s)	1284
BstF5I	GGATG	5 cut(s)	407, 485, 1044, 1089, 1211
BstHHI	GCGC	1 cut(s)	1198
BstKTI	GATC	2 cut(s)	675, 1282
BstMBI	GATC	2 cut(s)	672, 1279
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 226, 235, 503, 611, 646, 1100
BstNSI	RCATGY	1 cut(s)	1024
BstSCI	CCNGG	2 cut(s)	18, 1248
BstSFI	CTRYAG	3 cut(s)	315, 546, 967
BstV1I	GCAGC	6 cut(s)	191, 232, 532, 1078, 1085, 1115
BsuRI	GGCC	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	5 cut(s)	407, 485, 1044, 1089, 1211
BtsIMutI	CAGTG	1 cut(s)	1085
Cac8I	GCNNGC	2 cut(s)	543, 1089
CciI	TCATGA	1 cut(s)	840
CfoI	GCGC	1 cut(s)	1198
Cfr10I	RCCGGY	2 cut(s)	169, 1274
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	5 cut(s)	127, 733, 767, 1203, 1237
CspAI	ACCGGT	1 cut(s)	1274
CviAII	CATG	4 cut(s)	466, 740, 841, 1021
CviQI	GTAC	5 cut(s)	127, 733, 767, 1203, 1237
DdeI	CTNAG	1 cut(s)	1284
DpnI	GATC	2 cut(s)	674, 1281
DpnII	GATC	2 cut(s)	672, 1279
DraIII	CACNNNGTG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	376
Eco72I	CACGTG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	240
FaeI	CATG	4 cut(s)	469, 743, 844, 1024
FalI	AAGNNNNNCTT	4 cut(s)	929, 961, 974, 1006
FatI	CATG	4 cut(s)	465, 739, 840, 1020
Fnu4HI	GCNGC	7 cut(s)	180, 221, 546, 711, 1074, 1092, 1104
FokI	GGATG	5 cut(s)	394, 472, 1031, 1096, 1198
Fsp4HI	GCNGC	7 cut(s)	180, 221, 546, 711, 1074, 1092, 1104
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	1197
GluI	GCNGC	7 cut(s)	180, 221, 546, 711, 1074, 1092, 1104
GsaI	CCCAGC	1 cut(s)	1202
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	4 cut(s)	20, 170, 1249, 1275
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	1198
Hin1II	CATG	4 cut(s)	469, 743, 844, 1024
Hin6I	GCGC	1 cut(s)	1196
HinP1I	GCGC	1 cut(s)	1196
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	2 cut(s)	293, 627
HinfI	GANTC	8 cut(s)	145, 201, 431, 457, 599, 746, 795, 888
HpaII	CCGG	4 cut(s)	20, 170, 1249, 1275
HphI	GGTGA	3 cut(s)	387, 396, 1289
Hpy166II	GTNNAC	2 cut(s)	580, 1026
Hpy188I	TCNGA	5 cut(s)	751, 781, 893, 1003, 1171
Hpy188III	TCNNGA	4 cut(s)	59, 841, 872, 1218
Hpy8I	GTNNAC	2 cut(s)	580, 1026
HpyAV	CCTTC	6 cut(s)	181, 257, 402, 408, 655, 716
HpyCH4III	ACNGT	4 cut(s)	126, 493, 693, 848
HpyCH4IV	ACGT	5 cut(s)	111, 151, 253, 582, 769
HpyCH4V	TGCA	8 cut(s)	139, 238, 271, 317, 497, 548, 1020, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 226, 235, 503, 611, 646, 1100
HpyF3I	CTNAG	1 cut(s)	1284
HpySE526I	ACGT	5 cut(s)	111, 151, 253, 582, 769
Hsp92II	CATG	4 cut(s)	469, 743, 844, 1024
HspAI	GCGC	1 cut(s)	1196
KpnI	GGTACC	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	672, 1279
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	6 cut(s)	191, 232, 532, 1078, 1085, 1115
LweI	GCATC	4 cut(s)	258, 697, 903, 1074
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	5 cut(s)	111, 151, 253, 582, 769
MaeIII	GTNAC	2 cut(s)	583, 848
MalI	GATC	2 cut(s)	674, 1281
MboI	GATC	2 cut(s)	672, 1279
MboII	GAAGA	7 cut(s)	204, 207, 210, 303, 321, 670, 922
MluCI	AATT	3 cut(s)	33, 75, 677
MlyI	GAGTC	1 cut(s)	789
MmeI	TCCRAC	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	240
MroXI	GAANNNNTTC	2 cut(s)	34, 391
MseI	TTAA	6 cut(s)	365, 476, 717, 758, 878, 1119
MspA1I	CMGCKG	1 cut(s)	1091
MspI	CCGG	4 cut(s)	20, 170, 1249, 1275
MspR9I	CCNGG	2 cut(s)	20, 1250
MwoI	GCNNNNNNNGC	7 cut(s)	179, 226, 235, 503, 611, 646, 1100
NciI	CCSGG	2 cut(s)	20, 1250
NdeII	GATC	2 cut(s)	672, 1279
NlaIII	CATG	4 cut(s)	469, 743, 844, 1024
NlaIV	GGNNCC	2 cut(s)	192, 734
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	1024
NspV	TTCGAA	1 cut(s)	994
PagI	TCATGA	1 cut(s)	840
PceI	AGGCCT	1 cut(s)	376
PdmI	GAANNNNTTC	2 cut(s)	34, 391
PfeI	GAWTC	7 cut(s)	145, 201, 431, 457, 599, 746, 888
PfoI	TCCNGGA	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	1274
PkrI	GCNGC	7 cut(s)	181, 222, 547, 712, 1075, 1093, 1105
PleI	GAGTC	1 cut(s)	789
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	789
Ppu21I	YACGTR	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	111
PspCI	CACGTG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	1198
PspN4I	GGNNCC	2 cut(s)	192, 734
PstI	CTGCAG	2 cut(s)	319, 550
PvuII	CAGCTG	1 cut(s)	1091
RsaI	GTAC	5 cut(s)	128, 734, 768, 1204, 1238
RsaNI	GTAC	5 cut(s)	127, 733, 767, 1203, 1237
SaqAI	TTAA	6 cut(s)	365, 476, 717, 758, 878, 1119
SatI	GCNGC	7 cut(s)	180, 221, 546, 711, 1074, 1092, 1104
Sau3AI	GATC	2 cut(s)	672, 1279
SchI	GAGTC	1 cut(s)	789
ScrFI	CCNGG	2 cut(s)	20, 1250
SfaNI	GCATC	4 cut(s)	258, 697, 903, 1074
SfcI	CTRYAG	3 cut(s)	315, 546, 967
SfuI	TTCGAA	1 cut(s)	994
Sse9I	AATT	3 cut(s)	33, 75, 677
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	3 cut(s)	605, 711, 1094
SspMI	CTAG	1 cut(s)	701
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	18, 1248
TaaI	ACNGT	4 cut(s)	126, 493, 693, 848
TaiI	ACGT	5 cut(s)	114, 154, 256, 585, 772
TaqI	TCGA	4 cut(s)	525, 687, 994, 1041
TasI	AATT	3 cut(s)	33, 75, 677
TatI	WGTACW	1 cut(s)	1236
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	7 cut(s)	145, 201, 431, 457, 599, 746, 888
Tru1I	TTAA	6 cut(s)	365, 476, 717, 758, 878, 1119
Tru9I	TTAA	6 cut(s)	365, 476, 717, 758, 878, 1119
TscAI	CASTG	1 cut(s)	1085
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	6 cut(s)	179, 220, 545, 1073, 1091, 1103
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	8 cut(s)	21, 68, 193, 474, 534, 857, 948, 1000
TspRI	CASTG	1 cut(s)	1085
XapI	RAATTY	2 cut(s)	33, 75
XceI	RCATGY	1 cut(s)	1024
XmnI	GAANNNNTTC	2 cut(s)	34, 391
XspI	CTAG	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.